Wall clock time and date at job start Tue Mar 31 2020 14:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39601 * 120.23200 * 248.34672 * 3 2 1 5 5 F 1.35101 * 120.04134 * 0.02562 * 4 3 2 6 6 C 1.38443 * 119.92187 * 179.76934 * 4 3 2 7 7 C 1.38335 * 120.40714 * 0.49311 * 6 4 3 8 8 C 1.38169 * 120.47764 * 359.78815 * 7 6 4 9 9 C 1.39297 * 120.06427 * 359.95248 * 8 7 6 10 10 C 1.47683 * 120.20391 * 180.02562 * 9 8 7 11 11 O 1.21468 * 120.00004 * 180.02562 * 10 9 8 12 12 O 1.34727 * 119.99976 * 0.02562 * 10 9 8 13 13 C 1.45203 * 117.00146 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47243 * 179.97438 * 13 12 10 15 15 C 1.38638 * 119.74916 * 269.73532 * 14 13 12 16 16 C 1.37627 * 120.24607 * 179.72402 * 15 14 13 17 17 C 1.40708 * 119.74271 * 0.56442 * 16 15 14 18 18 C 1.41400 * 120.24371 * 179.68613 * 17 16 15 19 19 H 1.07996 * 120.00315 * 204.40435 * 18 17 16 20 20 C 1.39946 * 119.99944 * 24.40537 * 18 17 16 21 21 N 1.30820 * 119.99957 * 17.84759 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 197.85036 * 20 18 17 23 23 H 1.48499 * 109.47041 * 90.00235 * 22 20 18 24 24 H 1.48502 * 109.46833 * 209.99405 * 22 20 18 25 25 H 1.48499 * 109.47240 * 329.99568 * 22 20 18 26 26 C 1.40717 * 119.51510 * 359.70199 * 17 16 15 27 27 C 1.37620 * 119.74348 * 0.02562 * 26 17 16 28 28 H 1.07997 * 119.79508 * 180.27831 * 6 4 3 29 29 H 1.07998 * 119.75680 * 179.76133 * 7 6 4 30 30 H 1.08002 * 119.96358 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.47172 * 300.00450 * 13 12 10 32 32 H 1.09000 * 109.46674 * 59.99759 * 13 12 10 33 33 H 1.08000 * 119.87772 * 359.96932 * 15 14 13 34 34 H 1.08003 * 120.12527 * 180.27281 * 16 15 14 35 35 H 0.97003 * 120.00339 * 180.02562 * 21 20 18 36 36 H 1.08004 * 120.12647 * 179.97438 * 26 17 16 37 37 H 1.07994 * 119.87268 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.4460 1.1210 5 9 2.6006 0.8781 2.2116 6 6 4.6551 0.4394 1.1158 7 6 5.3490 0.0031 0.0015 8 6 4.6704 -0.4358 -1.1192 9 6 3.2776 -0.4426 -1.1335 10 6 2.5491 -0.9115 -2.3295 11 8 1.3345 -0.9155 -2.3381 12 8 3.2318 -1.3350 -3.4111 13 6 2.4505 -1.7824 -4.5503 14 6 3.3778 -2.2147 -5.6567 15 6 3.7952 -1.2927 -6.6041 16 6 4.6465 -1.6751 -7.6156 17 6 5.0836 -3.0104 -7.6928 18 6 5.9529 -3.4163 -8.7315 19 1 5.9811 -4.4513 -9.0385 20 6 6.7768 -2.4768 -9.3616 21 7 7.0125 -1.3247 -8.7885 22 14 7.5401 -2.8680 -11.0210 23 1 6.6259 -2.4235 -12.1035 24 1 8.8388 -2.1591 -11.1479 25 1 7.7625 -4.3321 -11.1308 26 6 4.6489 -3.9389 -6.7289 27 6 3.8021 -3.5329 -5.7229 28 1 5.1966 0.7801 1.9859 29 1 6.4290 0.0060 0.0074 30 1 5.2206 -0.7742 -1.9848 31 1 1.8226 -2.6223 -4.2529 32 1 1.8212 -0.9651 -4.9026 33 1 3.4543 -0.2695 -6.5458 34 1 4.9740 -0.9541 -8.3501 35 1 7.5833 -0.6733 -9.2253 36 1 4.9779 -4.9664 -6.7789 37 1 3.4669 -4.2438 -4.9823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777770483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:42 Heat of formation + Delta-G solvation = -68.442915 kcal Electronic energy + Delta-G solvation = -24923.128376 eV Core-core repulsion = 20930.344165 eV Total energy + Delta-G solvation = -3992.784211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.19078 -41.83926 -40.03752 -39.36255 -37.85267 -37.33550 -35.68175 -33.04661 -32.57982 -31.96188 -31.21191 -29.00963 -26.53440 -25.26010 -24.57049 -22.94336 -22.48189 -21.81649 -20.35334 -19.28766 -19.23589 -18.31682 -17.59437 -17.42244 -17.28281 -17.00538 -16.88703 -16.13251 -15.94108 -15.60057 -15.53340 -14.92439 -14.83176 -14.54310 -14.39670 -14.06316 -14.03652 -13.91368 -13.83600 -13.52754 -13.20804 -13.01398 -12.89256 -12.81532 -12.67501 -12.58045 -12.11305 -11.78733 -11.71671 -11.46175 -11.27761 -11.03938 -10.37114 -10.01408 -9.42830 -9.32576 -8.67739 -6.38427 -0.90939 -0.28791 0.69418 1.12955 1.29049 1.38319 1.42351 1.48085 1.53486 1.72181 1.77520 2.20712 2.53115 2.56350 2.69028 2.94779 3.40479 3.66833 3.74674 3.85144 4.05291 4.08550 4.10388 4.27475 4.48009 4.49452 4.56095 4.62148 4.87500 5.02724 5.04224 5.13422 5.15413 5.29473 5.33306 5.41000 5.56396 5.66416 5.89092 6.07212 6.15504 6.27922 6.33315 6.52890 6.65855 6.89978 6.98253 8.28637 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.002404 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.713810 B =11645.920507 C =12406.619468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.261 3.739 3 C -0.027 4.027 4 C 0.134 3.866 5 F -0.130 7.130 6 C -0.094 4.094 7 C -0.048 4.048 8 C -0.060 4.060 9 C -0.071 4.071 10 C 0.495 3.505 11 O -0.534 6.534 12 O -0.340 6.340 13 C 0.142 3.858 14 C -0.230 4.230 15 C -0.078 4.078 16 C -0.193 4.193 17 C 0.089 3.911 18 C -0.492 4.492 19 H 0.079 0.921 20 C 0.037 3.963 21 N -0.814 5.814 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.258 1.258 26 C -0.244 4.244 27 C -0.062 4.062 28 H 0.196 0.804 29 H 0.198 0.802 30 H 0.163 0.837 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.291 0.709 36 H 0.103 0.897 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 4.664 16.580 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.054 4.054 3 C -0.031 4.031 4 C 0.112 3.888 5 F -0.108 7.108 6 C -0.112 4.112 7 C -0.066 4.066 8 C -0.079 4.079 9 C -0.074 4.074 10 C 0.341 3.659 11 O -0.426 6.426 12 O -0.256 6.256 13 C 0.070 3.930 14 C -0.231 4.231 15 C -0.096 4.096 16 C -0.212 4.212 17 C 0.087 3.913 18 C -0.520 4.520 19 H 0.097 0.903 20 C -0.180 4.180 21 N -0.439 5.439 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.182 1.182 26 C -0.263 4.263 27 C -0.080 4.080 28 H 0.213 0.787 29 H 0.215 0.785 30 H 0.181 0.819 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.319 4.873 16.544 17.402 hybrid contribution -0.107 -0.099 -0.918 0.930 sum 2.211 4.774 15.626 16.488 Atomic orbital electron populations 1.81103 1.13290 1.08258 1.08414 1.25520 0.92947 0.93922 0.93023 1.15954 0.83971 1.07415 0.95775 1.17618 0.91179 0.98408 0.81546 1.91569 1.81055 1.86855 1.51311 1.21889 0.89348 0.97867 1.02112 1.21827 1.03437 0.91976 0.89336 1.21890 0.90380 0.94592 1.01001 1.18873 0.94909 1.04019 0.89618 1.21551 0.85885 0.74341 0.84091 1.90871 1.16182 1.52571 1.82936 1.86707 1.41760 1.73633 1.23543 1.21630 0.91368 0.98741 0.81255 1.18890 1.10219 0.94535 0.99456 1.20761 0.96412 0.97619 0.94817 1.21257 1.01501 0.97437 1.01027 1.18036 0.89907 0.92308 0.91076 1.19935 1.19383 0.96578 1.16120 0.90294 1.26771 0.95417 0.93874 1.01890 1.69856 1.28800 1.07493 1.37747 0.85196 0.77894 0.79829 0.76806 1.18876 1.19065 1.18172 1.21167 1.07023 0.99420 0.98726 1.20690 0.95547 0.94904 0.96872 0.78682 0.78511 0.81920 0.90936 0.91463 0.87631 0.87777 0.89818 0.87933 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.48 18.42 19.00 0.35 -15.13 16 2 C 0.26 7.95 12.41 88.33 1.10 9.05 16 3 C -0.03 -0.59 5.77 -21.06 -0.12 -0.71 16 4 C 0.13 2.00 7.27 22.65 0.16 2.16 16 5 F -0.13 -2.25 16.80 44.97 0.76 -1.49 16 6 C -0.09 -0.56 10.01 22.34 0.22 -0.33 16 7 C -0.05 -0.26 10.02 22.28 0.22 -0.04 16 8 C -0.06 -0.84 9.61 22.51 0.22 -0.62 16 9 C -0.07 -1.56 5.90 -19.88 -0.12 -1.68 16 10 C 0.50 15.26 7.87 70.32 0.55 15.81 16 11 O -0.53 -19.92 14.12 19.94 0.28 -19.63 16 12 O -0.34 -11.13 9.45 -56.37 -0.53 -11.66 16 13 C 0.14 5.02 5.59 71.23 0.40 5.42 16 14 C -0.23 -9.44 5.54 -19.68 -0.11 -9.55 16 15 C -0.08 -3.46 9.67 22.22 0.21 -3.24 16 16 C -0.19 -9.73 8.70 22.73 0.20 -9.53 16 17 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 18 C -0.49 -25.29 9.05 23.46 0.21 -25.07 16 19 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 20 C 0.04 1.77 5.14 85.26 0.44 2.21 16 21 N -0.81 -40.25 10.95 21.83 0.24 -40.01 16 22 Si 0.98 36.12 29.59 68.60 2.03 38.15 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 25 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 26 C -0.24 -11.40 9.80 22.73 0.22 -11.17 16 27 C -0.06 -2.58 9.67 22.22 0.21 -2.37 16 28 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 29 H 0.20 -0.48 8.06 -2.91 -0.02 -0.51 16 30 H 0.16 2.31 7.60 -2.91 -0.02 2.29 16 31 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 32 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 33 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 35 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 36 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -68.54 344.64 8.17 -60.38 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.13 Total: 14.58 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 3.91 Total: -25.18 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.59 Total: -55.14 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.25 Total: -31.29 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.76 Total: -1.49 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -68.54 8.17 -60.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777770483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.067 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds