Wall clock time and date at job start Tue Mar 31 2020 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99763 * 2 1 4 4 C 1.50700 * 109.46883 * 293.95124 * 3 2 1 5 5 C 1.33637 * 122.74972 * 95.00316 * 4 3 2 6 6 S 1.76200 * 107.92429 * 180.02562 * 5 4 3 7 7 C 1.70975 * 90.28381 * 359.97438 * 6 5 4 8 8 N 1.29024 * 110.16779 * 359.73440 * 7 6 5 9 9 C 1.46904 * 111.00255 * 123.94623 * 2 1 3 10 10 N 1.46504 * 109.46712 * 66.04726 * 9 2 1 11 11 N 1.40162 * 126.14916 * 270.18074 * 10 9 2 12 12 C 1.32238 * 107.76101 * 180.26569 * 11 10 9 13 13 C 1.40122 * 125.92750 * 179.74424 * 12 11 10 14 14 H 1.08001 * 119.99630 * 179.97438 * 13 12 11 15 15 C 1.40030 * 119.99823 * 0.02562 * 13 12 11 16 16 N 1.30792 * 120.00311 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99740 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47138 * 60.00287 * 17 15 13 19 19 H 1.48501 * 109.47458 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47265 * 300.00001 * 17 15 13 21 21 N 1.38500 * 108.14512 * 359.74316 * 12 11 10 22 22 C 1.46503 * 125.83500 * 179.97438 * 21 12 11 23 23 C 1.34726 * 108.33373 * 0.02562 * 21 12 11 24 24 S 1.71198 * 125.97671 * 180.02562 * 23 21 12 25 25 H 1.09002 * 109.47224 * 296.04382 * 1 2 3 26 26 H 1.09001 * 109.47391 * 56.05031 * 1 2 3 27 27 H 1.08997 * 109.46743 * 176.04921 * 1 2 3 28 28 H 1.08993 * 109.47512 * 53.95397 * 3 2 1 29 29 H 1.09005 * 109.46944 * 173.95559 * 3 2 1 30 30 H 1.08000 * 126.03873 * 359.97438 * 5 4 3 31 31 H 1.08002 * 124.91619 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47095 * 306.05427 * 9 2 1 33 33 H 1.08997 * 109.47421 * 186.04723 * 9 2 1 34 34 H 0.97001 * 120.00280 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.47126 * 270.02086 * 22 21 12 36 36 H 1.08998 * 109.47227 * 30.02368 * 22 21 12 37 37 H 1.09001 * 109.47147 * 150.01730 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.5551 2.8193 -1.4370 6 16 0.5144 3.4026 -3.0992 7 6 1.9565 2.5506 -3.4424 8 7 2.3677 1.9295 -2.3889 9 6 1.9955 -0.7658 1.1377 10 7 1.6470 -2.1798 0.9777 11 7 0.4830 -2.8028 1.4484 12 6 0.5437 -4.0796 1.1095 13 6 -0.4223 -5.0532 1.3965 14 1 -0.2745 -6.0726 1.0719 15 6 -1.5798 -4.7041 2.1031 16 7 -1.7590 -3.4694 2.4957 17 14 -2.8679 -6.0019 2.4850 18 1 -2.2577 -7.0787 3.3057 19 1 -3.9879 -5.3815 3.2373 20 1 -3.3820 -6.5775 1.2163 21 7 1.7278 -4.2876 0.4218 22 6 2.1858 -5.5648 -0.1306 23 6 2.3869 -3.1148 0.3486 24 16 3.9018 -2.8580 -0.4064 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1082 30 1 -0.1672 3.0453 -0.6665 31 1 2.4539 2.5382 -4.4009 32 1 1.5611 -0.3871 2.0629 33 1 3.0798 -0.6609 1.1757 34 1 -2.5609 -3.2275 2.9848 35 1 2.7762 -6.0935 0.6178 36 1 1.3234 -6.1710 -0.4079 37 1 2.7988 -5.3801 -1.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794623564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:55 Heat of formation + Delta-G solvation = 143.890671 kcal Electronic energy + Delta-G solvation = -22893.134711 eV Core-core repulsion = 19539.967511 eV Total energy + Delta-G solvation = -3353.167200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84321 -39.92015 -37.07864 -34.25295 -33.80096 -31.20237 -30.39587 -27.98455 -27.60190 -26.54612 -25.49450 -24.60295 -22.54227 -21.09126 -20.81867 -19.56214 -18.05239 -17.68985 -16.69862 -16.07028 -15.84185 -15.67758 -15.16530 -14.89904 -14.81466 -14.23971 -13.95082 -13.69833 -13.33556 -13.26877 -12.83003 -12.31186 -12.23423 -12.15477 -11.82516 -11.58486 -11.51866 -11.33674 -11.13057 -11.04518 -10.65101 -10.46220 -10.06307 -9.60889 -9.53813 -9.45920 -9.24304 -8.92199 -8.86518 -8.11689 -7.06738 -6.69195 -6.58011 -5.15468 0.68747 1.35984 1.68182 2.33862 2.64261 2.77567 2.82372 2.89316 2.91175 3.45185 3.52066 3.63487 4.09664 4.21379 4.39826 4.83148 4.96113 5.13906 5.20249 5.26440 5.43370 5.57205 5.60824 5.69117 5.86028 5.88564 5.92689 6.08917 6.12243 6.25623 6.51473 6.58218 6.79096 7.02174 7.12472 7.16095 7.60865 7.78007 7.80489 8.23567 8.34277 9.15699 9.90438 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003745 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.690946 B = 7474.709550 C = 8759.274804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.135 3.865 4 C 0.087 3.913 5 C -0.251 4.251 6 S 0.096 5.904 7 C 0.025 3.975 8 N -0.444 5.444 9 C 0.331 3.669 10 N -0.379 5.379 11 N -0.345 5.345 12 C 0.376 3.624 13 C -0.438 4.438 14 H 0.097 0.903 15 C 0.078 3.922 16 N -0.739 5.739 17 Si 0.928 3.072 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.262 1.262 21 N -0.518 5.518 22 C 0.101 3.899 23 C 0.481 3.519 24 S -0.701 6.701 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.175 0.825 31 H 0.198 0.802 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.285 0.715 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 9.157 -3.836 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C 0.004 3.996 4 C -0.046 4.046 5 C -0.390 4.390 6 S 0.348 5.652 7 C -0.274 4.274 8 N -0.156 5.156 9 C 0.119 3.881 10 N -0.165 5.165 11 N -0.176 5.176 12 C 0.127 3.873 13 C -0.479 4.479 14 H 0.115 0.885 15 C -0.149 4.149 16 N -0.364 5.364 17 Si 0.751 3.249 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.186 1.186 21 N -0.220 5.220 22 C -0.042 4.042 23 C 0.113 3.887 24 S -0.576 6.576 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.193 0.807 31 H 0.215 0.785 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.205 10.381 -4.718 11.614 hybrid contribution -1.157 -1.307 1.534 2.324 sum -3.363 9.074 -3.184 10.188 Atomic orbital electron populations 1.22427 0.86242 1.03904 0.99425 1.61660 1.08859 1.12079 1.44104 1.20424 1.01704 0.87165 0.90275 1.20110 0.91732 0.97507 0.95259 1.26881 1.04561 1.07353 1.00255 1.83927 1.26739 1.48644 1.05893 1.28458 0.97747 0.99240 1.01983 1.66116 1.31694 1.19246 0.98581 1.21635 1.00275 0.74948 0.91230 1.49057 1.16644 1.07575 1.43255 1.79317 1.01494 1.03854 1.32962 1.21253 0.84303 0.92601 0.89164 1.18323 1.00734 0.94843 1.34038 0.88547 1.25816 0.98638 0.96600 0.93821 1.69860 1.25259 1.17670 1.23569 0.86026 0.78976 0.80262 0.79638 1.18620 1.19935 1.18633 1.45978 1.18669 1.08662 1.48642 1.21744 1.00770 0.81853 0.99877 1.22907 0.93290 0.83420 0.89087 1.92751 1.08770 1.92215 1.63885 0.95466 0.92315 0.89844 0.92892 0.88409 0.80748 0.78520 0.91645 0.87083 0.90384 0.91543 0.89866 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.18 60.06 0.55 1.05 16 2 N -0.54 -9.81 4.89 -248.30 -1.21 -11.02 16 3 C 0.14 1.97 5.41 -4.98 -0.03 1.94 16 4 C 0.09 1.25 5.58 -84.22 -0.47 0.78 16 5 C -0.25 -2.96 9.78 29.12 0.28 -2.67 16 6 S 0.10 0.97 23.22 -107.50 -2.50 -1.53 16 7 C 0.02 0.29 12.23 51.58 0.63 0.92 16 8 N -0.44 -6.89 10.53 -11.90 -0.13 -7.01 16 9 C 0.33 6.40 5.91 -63.31 -0.37 6.02 16 10 N -0.38 -8.82 3.34 -65.05 -0.22 -9.04 16 11 N -0.34 -8.62 9.80 31.21 0.31 -8.32 16 12 C 0.38 9.24 7.50 -155.27 -1.16 8.07 16 13 C -0.44 -10.14 8.98 -38.20 -0.34 -10.48 16 14 H 0.10 2.01 7.11 -52.49 -0.37 1.64 16 15 C 0.08 1.73 5.50 -17.32 -0.10 1.63 16 16 N -0.74 -17.47 11.90 55.55 0.66 -16.80 16 17 Si 0.93 16.43 29.56 -169.99 -5.02 11.40 16 18 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 19 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 20 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 21 N -0.52 -11.94 3.17 -124.65 -0.39 -12.34 16 22 C 0.10 1.84 10.65 59.85 0.64 2.48 16 23 C 0.48 11.72 7.84 -86.93 -0.68 11.04 16 24 S -0.70 -17.83 29.50 -107.50 -3.17 -21.00 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.96 6.24 -51.93 -0.32 0.64 16 27 H 0.08 1.83 6.84 -51.93 -0.36 1.48 16 28 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.10 1.43 7.93 -51.93 -0.41 1.02 16 30 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 33 H 0.11 2.13 7.43 -51.93 -0.39 1.74 16 34 H 0.29 6.12 8.30 -40.82 -0.34 5.79 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 37 H 0.09 1.65 7.61 -51.93 -0.40 1.25 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -31.89 343.16 -11.85 -43.74 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.29 Total: 5.97 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: -1.05 Total: 20.78 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.99 Total: -64.53 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.02 Total: 11.40 kcal Atomic # 16 Polarization: -16.86 SS G_CDS: -5.67 Total: -22.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.89 -11.85 -43.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794623564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.633 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds