Wall clock time and date at job start Tue Mar 31 2020 13:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99763 * 2 1 4 4 C 1.50700 * 109.46883 * 293.95124 * 3 2 1 5 5 C 1.33637 * 122.74972 * 95.00316 * 4 3 2 6 6 S 1.76200 * 107.92429 * 180.02562 * 5 4 3 7 7 C 1.70975 * 90.28381 * 359.97438 * 6 5 4 8 8 N 1.29024 * 110.16779 * 359.73440 * 7 6 5 9 9 C 1.46904 * 111.00255 * 123.94623 * 2 1 3 10 10 N 1.46504 * 109.46712 * 66.04726 * 9 2 1 11 11 N 1.40162 * 126.14916 * 270.18074 * 10 9 2 12 12 C 1.32238 * 107.76101 * 180.26569 * 11 10 9 13 13 C 1.40122 * 125.92750 * 179.74424 * 12 11 10 14 14 H 1.08001 * 119.99630 * 179.97438 * 13 12 11 15 15 C 1.40030 * 119.99823 * 0.02562 * 13 12 11 16 16 N 1.30792 * 120.00311 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99740 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47138 * 60.00287 * 17 15 13 19 19 H 1.48501 * 109.47458 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47265 * 300.00001 * 17 15 13 21 21 N 1.38500 * 108.14512 * 359.74316 * 12 11 10 22 22 C 1.46503 * 125.83500 * 179.97438 * 21 12 11 23 23 C 1.34726 * 108.33373 * 0.02562 * 21 12 11 24 24 S 1.71198 * 125.97671 * 180.02562 * 23 21 12 25 25 H 1.09002 * 109.47224 * 296.04382 * 1 2 3 26 26 H 1.09001 * 109.47391 * 56.05031 * 1 2 3 27 27 H 1.08997 * 109.46743 * 176.04921 * 1 2 3 28 28 H 1.08993 * 109.47512 * 53.95397 * 3 2 1 29 29 H 1.09005 * 109.46944 * 173.95559 * 3 2 1 30 30 H 1.08000 * 126.03873 * 359.97438 * 5 4 3 31 31 H 1.08002 * 124.91619 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47095 * 306.05427 * 9 2 1 33 33 H 1.08997 * 109.47421 * 186.04723 * 9 2 1 34 34 H 0.97001 * 120.00280 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.47126 * 270.02086 * 22 21 12 36 36 H 1.08998 * 109.47227 * 30.02368 * 22 21 12 37 37 H 1.09001 * 109.47147 * 150.01730 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.5551 2.8193 -1.4370 6 16 0.5144 3.4026 -3.0992 7 6 1.9565 2.5506 -3.4424 8 7 2.3677 1.9295 -2.3889 9 6 1.9955 -0.7658 1.1377 10 7 1.6470 -2.1798 0.9777 11 7 0.4830 -2.8028 1.4484 12 6 0.5437 -4.0796 1.1095 13 6 -0.4223 -5.0532 1.3965 14 1 -0.2745 -6.0726 1.0719 15 6 -1.5798 -4.7041 2.1031 16 7 -1.7590 -3.4694 2.4957 17 14 -2.8679 -6.0019 2.4850 18 1 -2.2577 -7.0787 3.3057 19 1 -3.9879 -5.3815 3.2373 20 1 -3.3820 -6.5775 1.2163 21 7 1.7278 -4.2876 0.4218 22 6 2.1858 -5.5648 -0.1306 23 6 2.3869 -3.1148 0.3486 24 16 3.9018 -2.8580 -0.4064 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1082 30 1 -0.1672 3.0453 -0.6665 31 1 2.4539 2.5382 -4.4009 32 1 1.5611 -0.3871 2.0629 33 1 3.0798 -0.6609 1.1757 34 1 -2.5609 -3.2275 2.9848 35 1 2.7762 -6.0935 0.6178 36 1 1.3234 -6.1710 -0.4079 37 1 2.7988 -5.3801 -1.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794623564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:54 Heat of formation + Delta-G solvation = 124.415023 kcal Electronic energy + Delta-G solvation = -22893.979238 eV Core-core repulsion = 19539.967511 eV Total energy + Delta-G solvation = -3354.011728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62627 -40.93579 -38.47508 -35.93905 -35.46937 -32.68603 -31.76013 -29.57808 -28.81839 -28.23765 -26.92524 -25.71961 -24.07560 -22.73982 -22.55211 -20.54612 -19.49072 -18.96731 -18.35533 -17.57963 -17.41997 -16.90230 -16.63119 -16.41806 -16.38437 -15.71180 -15.23532 -14.99191 -14.65947 -14.22776 -14.04762 -13.77602 -13.73463 -13.46325 -13.43790 -13.06883 -12.93516 -12.79012 -12.66414 -12.41314 -12.18237 -12.03704 -11.70234 -11.37621 -10.93464 -10.65772 -10.54352 -10.37996 -9.83264 -9.47498 -8.80259 -8.63643 -8.53508 -6.96564 -0.21853 0.49722 0.54478 0.78573 0.84379 1.29676 1.45072 1.58216 1.61271 1.83753 1.87473 2.13727 2.44157 2.98213 3.10243 3.29200 3.59748 3.95779 4.07638 4.08543 4.15946 4.31675 4.40223 4.41845 4.45274 4.49857 4.59075 4.69275 4.73980 4.92225 4.97278 5.09680 5.11532 5.28396 5.64914 5.73025 5.95492 6.13027 6.48629 6.57510 6.87593 7.33251 8.24536 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003745 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.690946 B = 7474.709550 C = 8759.274804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.557 5.557 3 C 0.137 3.863 4 C 0.059 3.941 5 C -0.253 4.253 6 S 0.164 5.836 7 C 0.012 3.988 8 N -0.495 5.495 9 C 0.328 3.672 10 N -0.374 5.374 11 N -0.366 5.366 12 C 0.353 3.647 13 C -0.452 4.452 14 H 0.117 0.883 15 C 0.038 3.962 16 N -0.773 5.773 17 Si 1.005 2.995 18 H -0.254 1.254 19 H -0.272 1.272 20 H -0.255 1.255 21 N -0.519 5.519 22 C 0.095 3.905 23 C 0.467 3.533 24 S -0.739 6.739 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.195 0.805 31 H 0.222 0.778 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.292 0.708 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 9.238 -3.965 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.283 5.283 3 C 0.008 3.992 4 C -0.074 4.074 5 C -0.393 4.393 6 S 0.416 5.584 7 C -0.286 4.286 8 N -0.209 5.209 9 C 0.117 3.883 10 N -0.159 5.159 11 N -0.199 5.199 12 C 0.105 3.895 13 C -0.494 4.494 14 H 0.135 0.865 15 C -0.185 4.185 16 N -0.398 5.398 17 Si 0.824 3.176 18 H -0.178 1.178 19 H -0.196 1.196 20 H -0.179 1.179 21 N -0.220 5.220 22 C -0.046 4.046 23 C 0.097 3.903 24 S -0.615 6.615 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.212 0.788 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.125 10.485 -4.867 12.273 hybrid contribution -0.633 -1.233 1.537 2.070 sum -4.758 9.252 -3.330 10.923 Atomic orbital electron populations 1.22183 0.86213 1.01286 1.00562 1.61582 1.08933 1.14284 1.43500 1.20471 1.01238 0.85499 0.92006 1.20060 0.93099 0.99161 0.95047 1.27192 1.03827 1.06163 1.02108 1.83682 1.24464 1.46546 1.03686 1.28909 0.98817 0.98741 1.02138 1.66105 1.33595 1.21412 0.99821 1.21799 1.00274 0.73809 0.92438 1.49424 1.15818 1.08647 1.42055 1.79252 1.02198 1.04629 1.33820 1.21680 0.85061 0.92998 0.89768 1.18882 1.00862 0.95553 1.34075 0.86510 1.26829 1.00233 0.98598 0.92878 1.69946 1.26209 1.19756 1.23885 0.84885 0.75907 0.77276 0.79574 1.17841 1.19623 1.17915 1.46254 1.18106 1.09457 1.48159 1.22019 1.01966 0.80548 1.00074 1.22832 0.93253 0.84355 0.89894 1.92683 1.10427 1.92667 1.65721 0.94306 0.90960 0.94218 0.90101 0.89314 0.78772 0.76181 0.90396 0.87387 0.89737 0.89918 0.87517 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.63 9.18 127.69 1.17 2.80 16 2 N -0.56 -20.43 4.89 -939.48 -4.60 -25.02 16 3 C 0.14 3.99 5.41 85.56 0.46 4.45 16 4 C 0.06 1.65 5.58 41.52 0.23 1.88 16 5 C -0.25 -5.48 9.78 66.78 0.65 -4.82 16 6 S 0.16 2.89 23.22 -56.49 -1.31 1.58 16 7 C 0.01 0.26 12.23 130.65 1.60 1.86 16 8 N -0.50 -15.28 10.53 -191.55 -2.02 -17.30 16 9 C 0.33 12.97 5.91 170.80 1.01 13.98 16 10 N -0.37 -17.79 3.34 -359.71 -1.20 -18.99 16 11 N -0.37 -18.66 9.80 -55.17 -0.54 -19.20 16 12 C 0.35 17.44 7.50 133.52 1.00 18.45 16 13 C -0.45 -20.57 8.98 23.16 0.21 -20.36 16 14 H 0.12 4.65 7.11 -2.91 -0.02 4.63 16 15 C 0.04 1.64 5.50 85.28 0.47 2.11 16 16 N -0.77 -36.35 11.90 21.84 0.26 -36.09 16 17 Si 1.00 32.11 29.56 68.60 2.03 34.14 16 18 H -0.25 -7.81 7.11 99.48 0.71 -7.10 16 19 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 20 H -0.26 -7.85 7.11 99.48 0.71 -7.14 16 21 N -0.52 -24.09 3.17 -548.29 -1.74 -25.83 16 22 C 0.10 3.43 10.65 127.77 1.36 4.79 16 23 C 0.47 23.25 7.84 179.06 1.40 24.65 16 24 S -0.74 -38.49 29.50 -56.49 -1.67 -40.16 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 2.33 6.24 -2.39 -0.01 2.32 16 27 H 0.04 1.77 6.84 -2.39 -0.02 1.75 16 28 H 0.08 1.84 8.08 -2.39 -0.02 1.83 16 29 H 0.09 2.68 7.93 -2.38 -0.02 2.67 16 30 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.22 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.08 2.83 8.12 -2.39 -0.02 2.81 16 33 H 0.11 4.29 7.43 -2.39 -0.02 4.27 16 34 H 0.29 12.41 8.30 -92.71 -0.77 11.64 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.11 3.28 7.32 -2.39 -0.02 3.26 16 37 H 0.09 3.17 7.61 -2.39 -0.02 3.15 16 Total: -1.00 -70.11 343.16 -0.11 -70.22 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.10 Total: 26.86 kcal Atomic # 6 Polarization: 40.22 SS G_CDS: 9.57 Total: 49.79 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -9.83 Total: -142.43 kcal Atomic # 14 Polarization: 32.11 SS G_CDS: 2.03 Total: 34.14 kcal Atomic # 16 Polarization: -35.61 SS G_CDS: -2.98 Total: -38.58 kcal Total: -70.11 -0.11 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794623564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.633 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds