Wall clock time and date at job start Tue Mar 31 2020 13:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00077 * 2 1 4 4 O 1.21464 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.47735 * 119.99668 * 179.97438 * 3 2 1 6 6 C 1.39725 * 120.49408 * 0.02562 * 5 3 2 7 7 N 1.31734 * 120.88505 * 179.97438 * 6 5 3 8 8 C 1.31755 * 122.04854 * 0.02562 * 7 6 5 9 9 C 1.39684 * 120.89232 * 359.97438 * 8 7 6 10 10 C 1.47734 * 120.49569 * 180.02562 * 9 8 7 11 11 O 1.21471 * 119.99859 * 179.97438 * 10 9 8 12 12 O 1.34705 * 120.00212 * 359.97180 * 10 9 8 13 13 C 1.45191 * 117.00161 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47207 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47628 * 180.02562 * 14 13 12 16 16 S 1.80991 * 109.47675 * 180.02562 * 15 14 13 17 17 C 1.76199 * 100.00174 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00013 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00199 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47187 * 59.99291 * 21 19 17 23 23 H 1.48499 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48513 * 109.46945 * 299.99859 * 21 19 17 25 25 C 1.39768 * 120.49230 * 179.97438 * 5 3 2 26 26 H 1.08998 * 109.47048 * 300.00339 * 1 2 3 27 27 H 1.09007 * 109.46658 * 60.00009 * 1 2 3 28 28 H 1.08993 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.55892 * 359.97438 * 6 5 3 30 30 H 1.08008 * 119.55218 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47917 * 300.00510 * 13 12 10 32 32 H 1.08999 * 109.47067 * 60.00708 * 13 12 10 33 33 H 1.09002 * 109.47302 * 300.00079 * 14 13 12 34 34 H 1.09001 * 109.47173 * 60.00382 * 14 13 12 35 35 H 1.09007 * 109.46909 * 300.00406 * 15 14 13 36 36 H 1.09007 * 109.47234 * 59.99550 * 15 14 13 37 37 H 0.97002 * 119.99842 * 180.02562 * 20 19 17 38 38 H 1.07998 * 120.92555 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3100 0.1122 0.0006 7 7 5.6259 0.1720 0.0006 8 6 6.2736 1.3194 0.0011 9 6 5.5823 2.5332 0.0011 10 6 6.3174 3.8147 0.0011 11 8 5.7071 4.8649 0.0006 12 8 7.6644 3.8185 0.0016 13 6 8.3200 5.1140 0.0022 14 6 9.8373 4.9178 0.0021 15 6 10.5282 6.2829 0.0033 16 16 12.3232 6.0508 0.0025 17 6 12.8492 7.7324 0.0048 18 1 12.1177 8.5270 0.0058 19 6 14.2036 8.0359 0.0044 20 7 15.0951 7.0675 0.0027 21 14 14.7613 9.8187 0.0062 22 1 14.2416 10.4988 1.2197 23 1 16.2453 9.8732 0.0060 24 1 14.2402 10.5016 -1.2053 25 6 4.1843 2.5173 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.8205 -0.8505 0.0006 30 1 7.3537 1.3215 0.0015 31 1 8.0259 5.6705 -0.8877 32 1 8.0253 5.6699 0.8922 33 1 10.1318 4.3612 0.8919 34 1 10.1318 4.3620 -0.8881 35 1 10.2338 6.8399 -0.8863 36 1 10.2337 6.8384 0.8937 37 1 16.0416 7.2797 0.0027 38 1 3.6187 3.4373 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805523238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:07 Heat of formation + Delta-G solvation = -163.792861 kcal Electronic energy + Delta-G solvation = -22920.157216 eV Core-core repulsion = 19046.309484 eV Total energy + Delta-G solvation = -3873.847733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27163 -41.50877 -40.54456 -37.95750 -37.66777 -34.96364 -34.58078 -34.03210 -33.31285 -28.91194 -28.30902 -27.57585 -26.17200 -25.51817 -23.23584 -22.72720 -21.99939 -19.79319 -19.43938 -19.02687 -18.36165 -17.84949 -17.80853 -17.52807 -17.46757 -16.88909 -16.86586 -16.15849 -16.09133 -15.18491 -15.11622 -14.80591 -14.53720 -14.31570 -14.28805 -14.08151 -13.85720 -13.75370 -13.15850 -13.09247 -12.93465 -12.64491 -12.43711 -12.42208 -12.23728 -11.92059 -11.88512 -11.55236 -11.49992 -11.40040 -11.13315 -10.84919 -10.65638 -10.35033 -8.66445 -8.37360 -6.13469 -0.94566 -0.56878 1.05287 1.11714 1.33584 1.41388 1.42251 1.47373 1.53586 1.81034 2.27892 2.48461 2.97287 3.02888 3.20773 3.31282 3.40316 3.45799 3.63271 3.74748 3.86694 3.96188 4.13706 4.18587 4.31459 4.33866 4.34834 4.50029 4.60670 4.67369 4.70177 4.76174 5.03970 5.06215 5.11729 5.15780 5.31357 5.40477 6.18098 6.38029 6.46420 6.52361 7.05308 8.71567 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.044726 B = 0.001660 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.888273 B =16865.299844 C =17460.136659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.522 3.478 4 O -0.530 6.530 5 C -0.196 4.196 6 C 0.209 3.791 7 N -0.502 5.502 8 C 0.207 3.793 9 C -0.193 4.193 10 C 0.519 3.481 11 O -0.529 6.529 12 O -0.343 6.343 13 C 0.081 3.919 14 C -0.086 4.086 15 C -0.094 4.094 16 S -0.182 6.182 17 C -0.544 4.544 18 H 0.074 0.926 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.265 1.265 25 C 0.048 3.952 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.211 0.789 30 H 0.200 0.800 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.655 -17.765 -0.004 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.367 3.633 4 O -0.421 6.421 5 C -0.199 4.199 6 C 0.052 3.948 7 N -0.209 5.209 8 C 0.050 3.950 9 C -0.197 4.197 10 C 0.363 3.637 11 O -0.419 6.419 12 O -0.259 6.259 13 C 0.006 3.994 14 C -0.125 4.125 15 C -0.243 4.243 16 S 0.047 5.953 17 C -0.691 4.691 18 H 0.092 0.908 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.190 1.190 25 C 0.023 3.977 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.228 0.772 30 H 0.216 0.784 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.730 -18.935 -0.007 32.757 hybrid contribution -0.874 3.454 0.002 3.563 sum -27.604 -15.481 -0.005 31.649 Atomic orbital electron populations 1.23673 0.73586 1.06317 1.02807 1.86504 1.25643 1.30579 1.83567 1.20788 0.88353 0.81999 0.72175 1.90883 1.67141 1.37171 1.46896 1.19999 0.91089 0.95357 1.13442 1.24056 0.88713 0.98973 0.83055 1.68111 1.09932 1.28154 1.14733 1.23932 1.02626 0.85261 0.83161 1.19948 0.93373 0.92776 1.13580 1.20959 0.81344 0.89046 0.72303 1.90872 1.69699 1.34492 1.46881 1.86463 1.19578 1.36389 1.83460 1.23136 0.91633 0.81220 1.03393 1.21117 0.90677 0.95797 1.04863 1.23082 0.97491 1.00014 1.03688 1.84595 1.00059 1.13581 1.97063 1.23042 0.95190 0.91778 1.59126 0.90818 1.26021 0.95579 1.03411 0.93708 1.70131 1.02004 1.34260 1.47778 0.85100 0.77312 0.76920 0.79300 1.19025 1.19956 1.19017 1.21820 0.92571 0.98812 0.84516 0.91746 0.91755 0.84238 0.77248 0.78374 0.90469 0.90463 0.89851 0.89847 0.91354 0.91345 0.91906 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 113.37 1.20 1.38 16 2 O -0.35 -3.77 9.83 -56.17 -0.55 -4.33 16 3 C 0.52 8.38 7.90 70.33 0.56 8.94 16 4 O -0.53 -11.98 16.20 19.95 0.32 -11.65 16 5 C -0.20 -2.86 5.88 -20.04 -0.12 -2.98 16 6 C 0.21 2.31 10.78 85.07 0.92 3.22 16 7 N -0.50 -7.06 10.33 -193.61 -2.00 -9.06 16 8 C 0.21 3.04 10.78 85.05 0.92 3.96 16 9 C -0.19 -3.53 5.88 -20.04 -0.12 -3.65 16 10 C 0.52 12.22 7.90 70.33 0.56 12.78 16 11 O -0.53 -15.58 16.20 19.93 0.32 -15.26 16 12 O -0.34 -7.94 9.49 -56.15 -0.53 -8.47 16 13 C 0.08 2.05 5.47 71.98 0.39 2.45 16 14 C -0.09 -2.52 5.60 30.59 0.17 -2.35 16 15 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 16 S -0.18 -9.34 21.44 -56.49 -1.21 -10.55 16 17 C -0.54 -30.87 9.50 67.96 0.65 -30.23 16 18 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 19 C 0.02 1.02 5.49 84.86 0.47 1.48 16 20 N -0.91 -53.85 13.22 21.65 0.29 -53.56 16 21 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.05 0.87 9.25 23.02 0.21 1.08 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.21 0.94 7.61 -2.91 -0.02 0.92 16 30 H 0.20 2.27 7.61 -2.91 -0.02 2.25 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.15 3.10 7.40 -2.91 -0.02 3.08 16 Total: -1.00 -73.33 360.27 5.96 -67.37 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.09 Total: 7.12 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 6.21 Total: -7.06 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -1.71 Total: -62.62 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.44 Total: -39.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.21 Total: -10.55 kcal Total: -73.33 5.96 -67.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805523238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.419 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds