Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34676 * 116.99744 * 2 1 4 4 O 1.21428 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.48067 * 119.99852 * 180.02562 * 3 2 1 6 6 C 1.39283 * 119.65504 * 179.97438 * 5 3 2 7 7 C 1.39797 * 118.89350 * 179.70003 * 6 5 3 8 8 C 1.48042 * 120.89738 * 180.25667 * 7 6 5 9 9 O 1.21433 * 119.99770 * 359.97438 * 8 7 6 10 10 O 1.34666 * 120.00255 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00177 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47226 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.46902 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.46882 * 180.02562 * 13 12 11 15 15 C 1.76204 * 99.99827 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38792 * 119.99880 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00109 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47183 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46767 * 120.00161 * 19 17 15 22 22 H 1.48500 * 109.47797 * 240.00266 * 19 17 15 23 23 C 1.39849 * 118.21237 * 0.27414 * 7 6 5 24 24 C 1.38524 * 119.19002 * 0.02562 * 23 7 6 25 25 N 1.31440 * 121.04602 * 0.02562 * 24 23 7 26 26 H 1.09001 * 109.47512 * 60.00051 * 1 2 3 27 27 H 1.08999 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46812 * 299.99789 * 1 2 3 29 29 H 1.08002 * 120.55811 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.46559 * 299.99983 * 11 10 8 31 31 H 1.09004 * 109.47247 * 59.99593 * 11 10 8 32 32 H 1.08993 * 109.47768 * 299.99962 * 12 11 10 33 33 H 1.08999 * 109.46808 * 60.00195 * 12 11 10 34 34 H 1.09001 * 109.46829 * 300.00294 * 13 12 11 35 35 H 1.08991 * 109.47269 * 60.00239 * 13 12 11 36 36 H 0.97003 * 120.00372 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.40871 * 179.97438 * 23 7 6 38 38 H 1.08002 * 119.47739 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5421 1.2775 -0.0006 6 6 4.1669 2.5223 -0.0011 7 6 5.5638 2.5770 0.0048 8 6 6.2737 3.8760 0.0101 9 8 5.6421 4.9131 0.0090 10 8 7.6200 3.9077 0.0152 11 6 8.2487 5.2165 0.0209 12 6 9.7697 5.0517 0.0268 13 6 10.4321 6.4309 0.0321 14 16 12.2316 6.2360 0.0383 15 6 12.7227 7.9282 0.0429 16 1 11.9749 8.7074 0.0411 17 6 14.0704 8.2596 0.0489 18 7 14.9818 7.3098 0.0506 19 14 14.5911 10.0536 0.0530 20 1 13.3845 10.9192 0.0496 21 1 15.3963 10.3324 1.2693 22 1 15.4063 10.3353 -1.1557 23 6 6.2726 1.3714 0.0050 24 6 5.5725 0.1761 -0.0010 25 7 4.2582 0.1603 -0.0075 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.5820 3.4303 -0.0015 30 1 7.9461 5.7687 -0.8688 31 1 7.9395 5.7643 0.9111 32 1 10.0720 4.4997 0.9167 33 1 10.0792 4.5038 -0.8632 34 1 10.1298 6.9826 -0.8580 35 1 10.1227 6.9792 0.9218 36 1 15.9237 7.5414 0.0544 37 1 7.3526 1.3722 0.0091 38 1 6.1152 -0.7577 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805543710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -139.326287 kcal Electronic energy + Delta-G solvation = -22914.239118 eV Core-core repulsion = 19041.452336 eV Total energy + Delta-G solvation = -3872.786782 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54563 -40.68691 -39.80630 -37.00358 -36.93891 -33.90957 -33.26721 -32.48486 -32.26965 -28.41366 -27.20110 -25.79297 -25.43350 -24.66199 -22.63553 -21.48325 -21.18115 -18.97750 -18.27025 -17.54577 -17.37716 -16.95843 -16.90315 -16.80125 -16.28766 -16.01700 -15.10957 -14.99176 -14.85635 -14.49214 -14.41156 -14.20697 -13.55140 -13.51979 -12.94898 -12.93830 -12.68934 -12.47088 -12.19132 -11.46636 -11.34394 -11.26977 -11.26367 -11.15179 -11.08196 -10.90886 -10.70141 -10.66946 -10.41822 -10.30155 -9.95320 -9.68727 -9.12486 -8.41202 -6.61566 -6.29169 -4.00584 -0.25540 0.11107 1.68990 1.88468 2.25236 2.28181 3.17820 3.18241 3.18437 3.26819 3.45811 3.52405 3.96911 4.15697 4.18385 4.22395 4.26110 4.64864 4.69732 4.74335 4.98481 4.98998 5.03130 5.04203 5.07755 5.09512 5.29275 5.34572 5.37871 5.67806 5.72688 5.77820 5.80120 6.00857 6.22135 6.35798 6.57441 6.89744 7.26613 7.34813 7.55434 8.30904 9.17643 10.79026 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.044594 B = 0.001657 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.741732 B =16889.595119 C =17486.263651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.526 3.474 4 O -0.492 6.492 5 C 0.082 3.918 6 C -0.046 4.046 7 C -0.080 4.080 8 C 0.508 3.492 9 O -0.491 6.491 10 O -0.346 6.346 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.116 4.116 14 S -0.123 6.123 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.079 4.079 24 C 0.094 3.906 25 N -0.414 5.414 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.166 0.834 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.268 0.732 37 H 0.166 0.834 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.033 -17.055 -0.103 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.248 6.248 3 C 0.368 3.632 4 O -0.379 6.379 5 C -0.054 4.054 6 C -0.067 4.067 7 C -0.089 4.089 8 C 0.351 3.649 9 O -0.378 6.378 10 O -0.262 6.262 11 C -0.001 4.001 12 C -0.136 4.136 13 C -0.264 4.264 14 S 0.105 5.895 15 C -0.667 4.667 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.100 4.100 24 C -0.066 4.066 25 N -0.126 5.126 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.183 0.817 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.069 -18.153 -0.111 30.147 hybrid contribution -0.085 3.245 0.006 3.246 sum -24.154 -14.908 -0.105 28.384 Atomic orbital electron populations 1.23398 0.75617 1.04199 1.02840 1.86664 1.23526 1.31346 1.83289 1.20608 0.87532 0.82004 0.73024 1.90899 1.65711 1.36110 1.45144 1.19846 0.91247 0.89358 1.04912 1.22187 0.93436 0.99396 0.91636 1.19468 0.92910 0.92255 1.04305 1.20750 0.81823 0.88624 0.73731 1.90885 1.68023 1.34457 1.44451 1.86483 1.19599 1.36878 1.83260 1.23418 0.93548 0.80113 1.03063 1.21303 0.89653 0.98199 1.04462 1.23185 1.02492 0.97294 1.03448 1.84647 0.94244 1.13679 1.96891 1.22739 0.94614 0.90660 1.58700 0.90757 1.25014 0.95505 0.98736 0.94460 1.70022 1.01058 1.32236 1.47136 0.86094 0.78661 0.82723 0.77935 1.19572 1.20520 1.20516 1.23013 1.03416 0.91818 0.91714 1.23029 0.88801 0.98651 0.96094 1.67536 1.08853 1.30070 1.06155 0.91562 0.87574 0.91570 0.81673 0.90710 0.90716 0.90187 0.90193 0.91656 0.91656 0.92263 0.81668 0.80298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.33 -3.00 10.38 -40.43 -0.42 -3.42 16 3 C 0.53 5.43 7.95 34.76 0.28 5.71 16 4 O -0.49 -5.94 16.11 -19.21 -0.31 -6.25 16 5 C 0.08 0.80 6.75 -83.07 -0.56 0.24 16 6 C -0.05 -0.45 9.20 -38.61 -0.36 -0.81 16 7 C -0.08 -0.76 5.91 -104.69 -0.62 -1.38 16 8 C 0.51 6.06 7.92 34.75 0.28 6.34 16 9 O -0.49 -7.17 16.23 -19.21 -0.31 -7.48 16 10 O -0.35 -4.13 9.57 -40.40 -0.39 -4.52 16 11 C 0.07 0.95 5.47 37.16 0.20 1.15 16 12 C -0.10 -1.45 5.60 -26.73 -0.15 -1.60 16 13 C -0.12 -2.19 5.67 37.16 0.21 -1.98 16 14 S -0.12 -3.09 21.44 -107.50 -2.30 -5.39 16 15 C -0.52 -14.54 9.50 30.94 0.29 -14.24 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 18 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 19 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.08 -0.54 9.71 -38.87 -0.38 -0.91 16 24 C 0.09 0.59 11.17 -17.61 -0.20 0.39 16 25 N -0.41 -3.69 10.09 -9.86 -0.10 -3.79 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.17 1.69 7.33 -52.49 -0.38 1.30 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.17 0.81 7.70 -52.49 -0.40 0.41 16 38 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -33.96 361.26 -7.26 -41.22 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.56 Total: -3.35 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.03 Total: -3.93 kcal Atomic # 7 Polarization: -29.11 SS G_CDS: 0.63 Total: -28.47 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.43 Total: -21.67 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.30 Total: -5.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.96 -7.26 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.103 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds