Wall clock time and date at job start Tue Mar 31 2020 13:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34676 * 116.99744 * 2 1 4 4 O 1.21428 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.48067 * 119.99852 * 180.02562 * 3 2 1 6 6 C 1.39283 * 119.65504 * 179.97438 * 5 3 2 7 7 C 1.39797 * 118.89350 * 179.70003 * 6 5 3 8 8 C 1.48042 * 120.89738 * 180.25667 * 7 6 5 9 9 O 1.21433 * 119.99770 * 359.97438 * 8 7 6 10 10 O 1.34666 * 120.00255 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00177 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47226 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.46902 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.46882 * 180.02562 * 13 12 11 15 15 C 1.76204 * 99.99827 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38792 * 119.99880 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00109 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47183 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46767 * 120.00161 * 19 17 15 22 22 H 1.48500 * 109.47797 * 240.00266 * 19 17 15 23 23 C 1.39849 * 118.21237 * 0.27414 * 7 6 5 24 24 C 1.38524 * 119.19002 * 0.02562 * 23 7 6 25 25 N 1.31440 * 121.04602 * 0.02562 * 24 23 7 26 26 H 1.09001 * 109.47512 * 60.00051 * 1 2 3 27 27 H 1.08999 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46812 * 299.99789 * 1 2 3 29 29 H 1.08002 * 120.55811 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.46559 * 299.99983 * 11 10 8 31 31 H 1.09004 * 109.47247 * 59.99593 * 11 10 8 32 32 H 1.08993 * 109.47768 * 299.99962 * 12 11 10 33 33 H 1.08999 * 109.46808 * 60.00195 * 12 11 10 34 34 H 1.09001 * 109.46829 * 300.00294 * 13 12 11 35 35 H 1.08991 * 109.47269 * 60.00239 * 13 12 11 36 36 H 0.97003 * 120.00372 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.40871 * 179.97438 * 23 7 6 38 38 H 1.08002 * 119.47739 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5421 1.2775 -0.0006 6 6 4.1669 2.5223 -0.0011 7 6 5.5638 2.5770 0.0048 8 6 6.2737 3.8760 0.0101 9 8 5.6421 4.9131 0.0090 10 8 7.6200 3.9077 0.0152 11 6 8.2487 5.2165 0.0209 12 6 9.7697 5.0517 0.0268 13 6 10.4321 6.4309 0.0321 14 16 12.2316 6.2360 0.0383 15 6 12.7227 7.9282 0.0429 16 1 11.9749 8.7074 0.0411 17 6 14.0704 8.2596 0.0489 18 7 14.9818 7.3098 0.0506 19 14 14.5911 10.0536 0.0530 20 1 13.3845 10.9192 0.0496 21 1 15.3963 10.3324 1.2693 22 1 15.4063 10.3353 -1.1557 23 6 6.2726 1.3714 0.0050 24 6 5.5725 0.1761 -0.0010 25 7 4.2582 0.1603 -0.0075 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.5820 3.4303 -0.0015 30 1 7.9461 5.7687 -0.8688 31 1 7.9395 5.7643 0.9111 32 1 10.0720 4.4997 0.9167 33 1 10.0792 4.5038 -0.8632 34 1 10.1298 6.9826 -0.8580 35 1 10.1227 6.9792 0.9218 36 1 15.9237 7.5414 0.0544 37 1 7.3526 1.3722 0.0091 38 1 6.1152 -0.7577 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805543710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:02 Heat of formation + Delta-G solvation = -159.477726 kcal Electronic energy + Delta-G solvation = -22915.112950 eV Core-core repulsion = 19041.452336 eV Total energy + Delta-G solvation = -3873.660614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29293 -41.55719 -40.55424 -37.99998 -37.70061 -35.03478 -34.59607 -34.13510 -32.91654 -28.94641 -28.43401 -27.63802 -26.36247 -25.46623 -23.36771 -22.74528 -22.00728 -19.86699 -19.46644 -19.03367 -18.28796 -17.88772 -17.63298 -17.59084 -16.99450 -16.89821 -16.77521 -16.19631 -16.09944 -15.56315 -15.25385 -14.98226 -14.79641 -14.30738 -14.29907 -14.08323 -13.82471 -13.34517 -13.14588 -13.00725 -12.96992 -12.62710 -12.44560 -12.42566 -12.13501 -12.07687 -11.88961 -11.58142 -11.50675 -11.36274 -11.15845 -10.95538 -10.56730 -10.35140 -8.66663 -8.38401 -6.14080 -0.93770 -0.58766 0.96576 1.04625 1.32872 1.38422 1.39925 1.46317 1.52163 1.79049 2.26831 2.52416 2.91552 2.96538 3.17722 3.32093 3.53626 3.53915 3.56112 3.85335 3.93966 4.10780 4.14439 4.26201 4.28915 4.31685 4.32620 4.46236 4.54980 4.69314 4.69931 4.75210 5.03083 5.03817 5.08885 5.23883 5.28839 5.40658 6.17999 6.25496 6.39219 6.59079 7.04881 8.71012 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.044594 B = 0.001657 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.741732 B =16889.595119 C =17486.263651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.526 3.474 4 O -0.520 6.520 5 C 0.070 3.930 6 C -0.052 4.052 7 C -0.094 4.094 8 C 0.513 3.487 9 O -0.523 6.523 10 O -0.339 6.339 11 C 0.080 3.920 12 C -0.085 4.085 13 C -0.095 4.095 14 S -0.180 6.180 15 C -0.542 4.542 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.905 5.905 19 Si 0.992 3.008 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.058 4.058 24 C 0.107 3.893 25 N -0.425 5.425 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.066 0.934 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.272 0.728 37 H 0.191 0.809 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 -18.069 -0.105 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.369 3.631 4 O -0.409 6.409 5 C -0.065 4.065 6 C -0.073 4.073 7 C -0.102 4.102 8 C 0.357 3.643 9 O -0.413 6.413 10 O -0.255 6.255 11 C 0.005 3.995 12 C -0.123 4.123 13 C -0.244 4.244 14 S 0.048 5.952 15 C -0.690 4.690 16 H 0.091 0.909 17 C -0.187 4.187 18 N -0.542 5.542 19 Si 0.814 3.186 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.078 4.078 24 C -0.054 4.054 25 N -0.138 5.138 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.208 0.792 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -24.223 -19.194 -0.113 30.906 hybrid contribution -0.107 3.422 0.006 3.423 sum -24.330 -15.772 -0.107 28.995 Atomic orbital electron populations 1.23709 0.73838 1.06254 1.02953 1.86651 1.25359 1.30599 1.82810 1.20796 0.87932 0.82013 0.72334 1.90875 1.66386 1.36958 1.46671 1.19758 0.91121 0.89561 1.06029 1.22067 0.93721 0.99129 0.92355 1.19351 0.92631 0.92039 1.06223 1.21126 0.81437 0.89181 0.72529 1.90875 1.68449 1.35826 1.46140 1.86456 1.19760 1.35983 1.83262 1.23172 0.92189 0.80706 1.03429 1.21111 0.90650 0.95638 1.04945 1.23087 0.97628 0.99963 1.03674 1.84575 1.00223 1.13316 1.97050 1.23101 0.95232 0.91734 1.58890 0.90876 1.26008 0.95453 1.03511 0.93739 1.70139 1.01523 1.34591 1.47934 0.84998 0.78394 0.76897 0.78291 1.18822 1.19708 1.19700 1.23338 1.04530 0.90744 0.89220 1.23741 0.87888 0.99989 0.93769 1.67586 1.10155 1.29566 1.06469 0.91488 0.84545 0.91496 0.83048 0.90454 0.90455 0.89739 0.89751 0.91388 0.91384 0.91901 0.79157 0.76157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.34 -5.95 10.38 -55.85 -0.58 -6.53 16 3 C 0.53 11.02 7.95 70.43 0.56 11.58 16 4 O -0.52 -13.09 16.11 20.07 0.32 -12.77 16 5 C 0.07 1.34 6.75 41.87 0.28 1.62 16 6 C -0.05 -1.03 9.20 22.90 0.21 -0.82 16 7 C -0.09 -1.65 5.91 -19.91 -0.12 -1.77 16 8 C 0.51 11.74 7.92 70.42 0.56 12.30 16 9 O -0.52 -15.30 16.23 20.05 0.33 -14.98 16 10 O -0.34 -7.44 9.57 -55.75 -0.53 -7.97 16 11 C 0.08 1.95 5.47 71.98 0.39 2.35 16 12 C -0.09 -2.39 5.60 30.59 0.17 -2.22 16 13 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 14 S -0.18 -9.13 21.44 -56.49 -1.21 -10.34 16 15 C -0.54 -30.49 9.50 67.95 0.65 -29.85 16 16 H 0.07 3.98 7.80 -2.91 -0.02 3.96 16 17 C 0.02 1.01 5.49 84.86 0.47 1.48 16 18 N -0.91 -53.35 13.22 21.65 0.29 -53.06 16 19 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.06 -0.61 9.71 22.73 0.22 -0.39 16 24 C 0.11 0.97 11.17 84.82 0.95 1.91 16 25 N -0.43 -6.77 10.09 -185.12 -1.87 -8.63 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.15 3.33 7.33 -2.91 -0.02 3.31 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.48 8.14 -2.40 -0.02 2.46 16 36 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.19 1.06 7.70 -2.91 -0.02 1.03 16 38 H 0.22 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -74.62 361.26 5.80 -68.82 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.09 Total: 5.74 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.94 Total: -5.46 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.58 Total: -61.69 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.46 Total: -42.25 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.21 Total: -10.34 kcal Total: -74.62 5.80 -68.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.659 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds