Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99636 * 2 1 4 4 H 1.48501 * 109.46876 * 269.99591 * 3 2 1 5 5 H 1.48500 * 109.47483 * 29.99185 * 3 2 1 6 6 H 1.48500 * 109.47364 * 149.99529 * 3 2 1 7 7 C 1.38945 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99663 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00082 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99750 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00235 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47625 * 179.97438 * 12 10 9 14 14 C 1.34223 * 117.00550 * 179.97438 * 13 12 10 15 15 O 1.20824 * 119.99641 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00476 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47592 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 C 1.38239 * 120.00487 * 100.00100 * 19 18 17 21 21 C 1.38220 * 120.01336 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.02394 * 0.03851 * 21 20 19 23 23 C 1.38197 * 120.01707 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.00622 * 279.72913 * 19 18 17 25 25 Cl 1.73596 * 120.01445 * 359.97409 * 24 19 18 26 26 H 0.96999 * 120.00471 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99955 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46837 * 59.99845 * 12 10 9 29 29 H 1.08997 * 109.47221 * 300.00622 * 12 10 9 30 30 H 1.09002 * 109.47210 * 59.99729 * 16 14 13 31 31 H 1.09001 * 109.46665 * 299.99987 * 16 14 13 32 32 H 1.09002 * 109.47103 * 59.99616 * 17 16 14 33 33 H 1.08998 * 109.46862 * 300.00428 * 17 16 14 34 34 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 35 35 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 36 36 H 1.08002 * 119.99356 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.98661 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.99473 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00665 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6528 0.6998 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0011 12 6 1.2440 -4.8629 0.0022 13 8 2.1875 -5.9665 0.0015 14 6 1.6746 -7.2069 0.0024 15 8 0.4767 -7.3652 0.0033 16 6 2.5925 -8.4020 0.0023 17 6 1.7594 -9.6852 0.0028 18 6 2.6914 -10.8985 0.0021 19 6 1.8707 -12.1624 0.0032 20 6 1.6673 -12.8557 -1.1753 21 6 0.9150 -14.0152 -1.1744 22 6 0.3649 -14.4820 0.0051 23 6 0.5673 -13.7897 1.1839 24 6 1.3254 -12.6321 1.1846 25 17 1.5869 -11.7662 2.6663 26 1 -0.4851 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0016 28 1 0.6170 -4.9209 -0.8876 29 1 0.6176 -4.9205 0.8923 30 1 3.2220 -8.3767 0.8918 31 1 3.2207 -8.3775 -0.8882 32 1 1.1302 -9.7102 -0.8869 33 1 1.1309 -9.7098 0.8930 34 1 3.3209 -10.8737 0.8916 35 1 3.3196 -10.8735 -0.8884 36 1 2.0963 -12.4912 -2.0970 37 1 0.7567 -14.5567 -2.0953 38 1 -0.2232 -15.3878 0.0052 39 1 0.1378 -14.1546 2.1051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811348860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = -140.972241 kcal Electronic energy + Delta-G solvation = -23302.725316 eV Core-core repulsion = 19427.823453 eV Total energy + Delta-G solvation = -3874.901863 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66167 -40.40212 -40.03854 -37.65907 -37.36650 -36.05808 -35.98581 -33.43404 -32.50762 -31.60859 -30.20138 -28.15435 -26.53155 -24.14931 -23.62408 -22.04310 -21.51932 -21.41676 -20.08471 -18.84490 -17.98256 -17.93283 -17.80992 -17.14114 -16.85368 -16.46597 -16.13504 -16.02121 -15.73626 -15.14165 -14.87480 -14.73764 -14.64933 -14.14333 -13.93700 -13.59285 -13.53072 -13.29514 -13.00480 -12.92428 -12.67405 -12.48714 -12.40352 -12.38133 -12.21911 -12.12535 -11.87224 -11.66016 -11.59542 -11.56744 -11.51722 -10.52569 -10.13220 -9.82385 -9.57976 -8.53373 -6.04296 0.22096 0.33867 1.14399 1.22209 1.35401 1.38981 1.47268 1.58585 1.85624 2.29574 2.70118 3.05406 3.11987 3.61862 3.67239 3.83030 4.01465 4.03646 4.10752 4.14987 4.20584 4.23917 4.39457 4.45557 4.46766 4.64092 4.65221 4.73040 4.90178 5.03321 5.10103 5.30994 5.33312 5.35701 5.41867 5.49903 5.53752 5.87885 5.92108 6.44690 6.67558 7.01570 7.38363 7.91765 8.63649 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.001804 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.200079 B =15517.680602 C =15653.531417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.071 3.929 13 O -0.346 6.346 14 C 0.455 3.545 15 O -0.538 6.538 16 C -0.105 4.105 17 C -0.096 4.096 18 C -0.079 4.079 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.053 4.053 25 Cl -0.079 7.079 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -29.888 -1.192 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.007 4.007 13 O -0.262 6.262 14 C 0.300 3.700 15 O -0.428 6.428 16 C -0.142 4.142 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.079 4.079 25 Cl -0.050 7.050 26 H 0.091 0.909 27 H 0.234 0.766 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.873 -29.662 -1.047 29.693 hybrid contribution -0.592 1.125 0.390 1.330 sum 0.280 -28.537 -0.658 28.546 Atomic orbital electron populations 1.69674 1.06981 1.29759 1.49134 1.26155 0.96611 1.02667 0.95628 0.84831 0.77863 0.76230 0.78827 1.19376 1.19421 1.19530 1.19734 0.92975 0.83376 1.50702 0.89711 1.41755 1.09550 1.04233 1.64006 1.20128 0.88092 0.85412 0.84109 1.90520 1.15429 1.87718 1.56785 1.22474 0.90283 0.82796 1.05101 1.86566 1.40772 1.15277 1.83538 1.24748 0.89324 0.84727 0.71186 1.90642 1.18299 1.86848 1.46992 1.21560 0.97467 0.87005 1.08180 1.21312 0.97614 0.91210 1.03218 1.20641 0.96692 0.89218 1.05096 1.19926 0.98992 0.97623 0.92052 1.21390 0.98836 0.95273 0.97460 1.21626 0.96327 0.96125 0.99367 1.21457 0.99761 1.00570 0.91631 1.21307 0.98407 0.93965 1.00451 1.21099 1.03154 0.96192 0.87472 1.98373 1.95514 1.76678 1.34467 0.90947 0.76599 0.87735 0.87945 0.85807 0.84872 0.91415 0.92322 0.89869 0.87920 0.83176 0.82998 0.82927 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.22 29.55 68.60 2.03 44.24 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.34 -19.18 9.68 84.04 0.81 -18.37 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -29.02 5.29 -306.99 -1.62 -30.65 16 10 C 0.44 21.64 7.86 87.66 0.69 22.33 16 11 O -0.62 -35.51 16.08 15.73 0.25 -35.26 16 12 C 0.07 2.73 5.94 71.24 0.42 3.15 16 13 O -0.35 -12.82 9.75 -44.99 -0.44 -13.25 16 14 C 0.46 13.75 7.96 71.24 0.57 14.31 16 15 O -0.54 -18.57 15.73 21.97 0.35 -18.22 16 16 C -0.11 -2.04 5.81 29.84 0.17 -1.86 16 17 C -0.10 -1.76 4.44 30.59 0.14 -1.63 16 18 C -0.08 -1.09 4.80 29.85 0.14 -0.94 16 19 C -0.09 -1.31 5.14 -19.84 -0.10 -1.41 16 20 C -0.11 -1.35 9.67 22.27 0.22 -1.13 16 21 C -0.12 -1.19 10.05 22.27 0.22 -0.97 16 22 C -0.12 -1.26 10.05 22.27 0.22 -1.04 16 23 C -0.12 -1.76 9.83 22.29 0.22 -1.54 16 24 C -0.05 -0.91 6.31 22.32 0.14 -0.77 16 25 Cl -0.08 -1.49 26.66 -2.72 -0.07 -1.56 16 26 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 28 H 0.10 3.63 8.13 -2.39 -0.02 3.61 16 29 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 30 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.06 1.31 7.25 -2.39 -0.02 1.29 16 34 H 0.08 1.14 7.34 -2.39 -0.02 1.12 16 35 H 0.10 0.95 8.01 -2.39 -0.02 0.93 16 36 H 0.15 1.17 8.04 -2.91 -0.02 1.15 16 37 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -72.51 359.29 5.46 -67.05 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.35 Total: 26.25 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.33 Total: 10.08 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.34 Total: -79.32 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: 0.16 Total: -66.74 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -72.51 5.46 -67.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811348860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.925 kcal (2) G-P(sol) polarization free energy of solvation -72.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds