Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99424 * 2 1 4 4 H 1.48500 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47305 * 299.99618 * 3 2 1 6 6 H 1.48503 * 109.47329 * 59.99688 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99423 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99870 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00402 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00386 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47073 * 30.00679 * 14 13 11 16 16 C 1.52997 * 109.47339 * 150.00427 * 14 13 11 17 17 C 1.50695 * 109.46942 * 295.00139 * 16 14 13 18 18 C 1.38246 * 119.98903 * 269.72200 * 17 16 14 19 19 C 1.38211 * 120.01370 * 179.72771 * 18 17 16 20 20 C 1.38355 * 119.98560 * 0.54968 * 19 18 17 21 21 Cl 1.73599 * 120.01274 * 179.70271 * 20 19 18 22 22 C 1.38349 * 119.97638 * 359.72839 * 20 19 18 23 23 C 1.38216 * 119.98401 * 359.97438 * 22 20 19 24 24 C 1.50706 * 109.47297 * 270.00809 * 14 13 11 25 25 N 1.34772 * 120.00061 * 175.00064 * 24 14 13 26 26 O 1.21279 * 119.99840 * 354.99237 * 24 14 13 27 27 H 0.96989 * 120.00426 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47305 * 59.99045 * 9 7 2 29 29 H 1.09002 * 109.46662 * 299.99606 * 9 7 2 30 30 H 1.09005 * 109.47110 * 59.99493 * 10 9 7 31 31 H 1.09002 * 109.46946 * 299.99492 * 10 9 7 32 32 H 1.08998 * 109.46934 * 55.00187 * 16 14 13 33 33 H 1.08998 * 109.47192 * 175.00034 * 16 14 13 34 34 H 1.08001 * 119.98883 * 0.02562 * 18 17 16 35 35 H 1.08002 * 120.00627 * 180.27433 * 19 18 17 36 36 H 1.07994 * 120.01210 * 180.02562 * 22 20 19 37 37 H 1.08001 * 119.99401 * 179.97438 * 23 22 20 38 38 H 0.97003 * 120.00213 * 359.97438 * 25 24 14 39 39 H 0.97000 * 120.00282 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4922 -4.9671 0.0012 12 8 0.2839 -4.9672 0.0011 13 8 2.1633 -6.1295 0.0008 14 6 1.3727 -7.3473 0.0008 15 1 0.4282 -7.1674 -0.5128 16 6 2.1425 -8.4553 -0.7207 17 6 2.3085 -8.0879 -2.1727 18 6 1.3554 -8.4740 -3.0966 19 6 1.5043 -8.1325 -4.4275 20 6 2.6134 -7.4137 -4.8370 21 17 2.8050 -6.9910 -6.5098 22 6 3.5698 -7.0325 -3.9130 23 6 3.4167 -7.3694 -2.5813 24 6 1.0994 -7.7688 1.4217 25 7 0.2949 -8.8213 1.6695 26 8 1.6036 -7.1610 2.3421 27 1 -0.4850 0.8399 0.0004 28 1 0.6248 -2.5571 -0.8895 29 1 0.6243 -2.5567 0.8904 30 1 2.8723 -3.6041 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 3.1238 -8.5743 -0.2615 33 1 1.5894 -9.3914 -0.6438 34 1 0.4918 -9.0386 -2.7774 35 1 0.7574 -8.4304 -5.1485 36 1 4.4355 -6.4711 -4.2319 37 1 4.1635 -7.0722 -1.8599 38 1 -0.1086 -9.3073 0.9334 39 1 0.1193 -9.0928 2.5840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812613870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = -124.716257 kcal Electronic energy + Delta-G solvation = -24724.086264 eV Core-core repulsion = 20849.889314 eV Total energy + Delta-G solvation = -3874.196950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74737 -39.49959 -38.98934 -36.78753 -36.14846 -34.28891 -33.56446 -33.12911 -31.30019 -31.13306 -29.38811 -26.10078 -24.95327 -23.12325 -22.50420 -21.58467 -20.59767 -19.84668 -18.06542 -17.64023 -17.31191 -16.97102 -16.18800 -15.81317 -15.73022 -15.38471 -15.20433 -14.65918 -14.43889 -14.21386 -13.78028 -13.66551 -13.58935 -13.04896 -12.91573 -12.68278 -12.22361 -11.90431 -11.73699 -11.59337 -11.38535 -11.17498 -11.15026 -11.00704 -10.94545 -10.60201 -10.04362 -9.96715 -9.92153 -9.83074 -9.56110 -9.25913 -9.14025 -8.79792 -8.35469 -5.99131 -4.03684 0.85067 1.07337 1.93994 2.40302 2.67464 2.87961 3.32053 3.32925 3.40118 3.43125 3.44681 4.30176 4.44629 4.47906 4.57021 4.66098 4.78775 4.83665 4.90115 5.06948 5.26058 5.36549 5.38200 5.51000 5.57703 5.72578 5.94299 6.01791 6.14615 6.21121 6.26608 6.51235 6.55161 6.60399 6.89743 7.02998 7.69058 7.76097 8.00448 8.01647 8.24699 8.40558 9.03383 9.60275 11.12060 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.003852 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.376394 B = 7267.402141 C = 9929.936480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.101 4.101 11 C 0.461 3.539 12 O -0.505 6.505 13 O -0.333 6.333 14 C 0.072 3.928 15 H 0.111 0.889 16 C -0.070 4.070 17 C -0.084 4.084 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.033 4.033 21 Cl -0.073 7.073 22 C -0.108 4.108 23 C -0.085 4.085 24 C 0.506 3.494 25 N -0.852 5.852 26 O -0.518 6.518 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.401 0.599 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -24.379 -7.197 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.305 3.695 12 O -0.391 6.391 13 O -0.250 6.250 14 C 0.012 3.988 15 H 0.128 0.872 16 C -0.107 4.107 17 C -0.084 4.084 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.060 4.060 21 Cl -0.044 7.044 22 C -0.127 4.127 23 C -0.103 4.103 24 C 0.289 3.711 25 N -0.419 5.419 26 O -0.392 6.392 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.229 0.771 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.006 -23.698 -6.881 25.000 hybrid contribution -0.146 0.586 -0.135 0.618 sum 3.860 -23.112 -7.017 24.460 Atomic orbital electron populations 1.70003 1.06099 1.26613 1.50121 1.25014 0.94840 0.99312 0.95127 0.86495 0.80067 0.83587 0.77597 1.19614 1.20982 1.20961 1.21185 0.93117 0.90582 1.51565 0.92227 1.19020 0.93220 0.89269 0.98855 1.21773 1.00728 0.87268 1.04067 1.24883 0.88081 0.85653 0.70858 1.90616 1.15856 1.87258 1.45323 1.86710 1.40288 1.13613 1.84343 1.22383 0.97851 0.85472 0.93065 0.87150 1.20660 1.02843 0.95797 0.91441 1.19743 0.95263 0.98754 0.94666 1.20994 0.98796 1.00195 0.92187 1.21008 0.96805 0.98583 0.96587 1.20987 0.97597 1.01741 0.85669 1.98376 1.97373 1.92254 1.16421 1.21118 0.98965 1.00040 0.92536 1.21122 0.97765 0.96283 0.95117 1.20875 0.78424 0.80133 0.91695 1.43772 1.51789 1.33827 1.12464 1.90808 1.49585 1.52849 1.45948 0.92934 0.95625 0.95580 0.88710 0.88927 0.88664 0.88466 0.85038 0.84902 0.84653 0.84389 0.77114 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.91 4.26 -27.89 -0.12 0.79 16 10 C -0.10 -2.14 5.75 -27.89 -0.16 -2.31 16 11 C 0.46 9.39 7.92 36.00 0.29 9.67 16 12 O -0.50 -11.62 15.20 -18.75 -0.29 -11.91 16 13 O -0.33 -5.49 8.92 -45.88 -0.41 -5.89 16 14 C 0.07 0.90 2.34 -27.88 -0.07 0.84 16 15 H 0.11 1.41 7.16 -51.93 -0.37 1.04 16 16 C -0.07 -0.57 5.04 -27.89 -0.14 -0.71 16 17 C -0.08 -0.79 4.97 -104.62 -0.52 -1.31 16 18 C -0.10 -0.88 9.70 -39.59 -0.38 -1.27 16 19 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 20 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 21 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 23 C -0.08 -0.86 9.40 -39.59 -0.37 -1.24 16 24 C 0.51 6.70 7.42 -10.98 -0.08 6.62 16 25 N -0.85 -6.62 8.77 31.22 0.27 -6.35 16 26 O -0.52 -9.56 17.35 -14.05 -0.24 -9.80 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.10 0.45 7.71 -51.93 -0.40 0.05 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.40 1.63 8.54 -40.82 -0.35 1.28 16 39 H 0.40 2.73 8.93 -40.82 -0.36 2.36 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -37.26 361.87 -8.82 -46.08 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.82 Total: 0.73 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.00 Total: -6.14 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 1.01 Total: -32.99 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.94 Total: -27.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.26 -8.82 -46.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.638 kcal (2) G-P(sol) polarization free energy of solvation -37.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds