Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99424 * 2 1 4 4 H 1.48500 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47305 * 299.99618 * 3 2 1 6 6 H 1.48503 * 109.47329 * 59.99688 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99423 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99870 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00402 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00386 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47073 * 30.00679 * 14 13 11 16 16 C 1.52997 * 109.47339 * 150.00427 * 14 13 11 17 17 C 1.50695 * 109.46942 * 295.00139 * 16 14 13 18 18 C 1.38246 * 119.98903 * 269.72200 * 17 16 14 19 19 C 1.38211 * 120.01370 * 179.72771 * 18 17 16 20 20 C 1.38355 * 119.98560 * 0.54968 * 19 18 17 21 21 Cl 1.73599 * 120.01274 * 179.70271 * 20 19 18 22 22 C 1.38349 * 119.97638 * 359.72839 * 20 19 18 23 23 C 1.38216 * 119.98401 * 359.97438 * 22 20 19 24 24 C 1.50706 * 109.47297 * 270.00809 * 14 13 11 25 25 N 1.34772 * 120.00061 * 175.00064 * 24 14 13 26 26 O 1.21279 * 119.99840 * 354.99237 * 24 14 13 27 27 H 0.96989 * 120.00426 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47305 * 59.99045 * 9 7 2 29 29 H 1.09002 * 109.46662 * 299.99606 * 9 7 2 30 30 H 1.09005 * 109.47110 * 59.99493 * 10 9 7 31 31 H 1.09002 * 109.46946 * 299.99492 * 10 9 7 32 32 H 1.08998 * 109.46934 * 55.00187 * 16 14 13 33 33 H 1.08998 * 109.47192 * 175.00034 * 16 14 13 34 34 H 1.08001 * 119.98883 * 0.02562 * 18 17 16 35 35 H 1.08002 * 120.00627 * 180.27433 * 19 18 17 36 36 H 1.07994 * 120.01210 * 180.02562 * 22 20 19 37 37 H 1.08001 * 119.99401 * 179.97438 * 23 22 20 38 38 H 0.97003 * 120.00213 * 359.97438 * 25 24 14 39 39 H 0.97000 * 120.00282 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4922 -4.9671 0.0012 12 8 0.2839 -4.9672 0.0011 13 8 2.1633 -6.1295 0.0008 14 6 1.3727 -7.3473 0.0008 15 1 0.4282 -7.1674 -0.5128 16 6 2.1425 -8.4553 -0.7207 17 6 2.3085 -8.0879 -2.1727 18 6 1.3554 -8.4740 -3.0966 19 6 1.5043 -8.1325 -4.4275 20 6 2.6134 -7.4137 -4.8370 21 17 2.8050 -6.9910 -6.5098 22 6 3.5698 -7.0325 -3.9130 23 6 3.4167 -7.3694 -2.5813 24 6 1.0994 -7.7688 1.4217 25 7 0.2949 -8.8213 1.6695 26 8 1.6036 -7.1610 2.3421 27 1 -0.4850 0.8399 0.0004 28 1 0.6248 -2.5571 -0.8895 29 1 0.6243 -2.5567 0.8904 30 1 2.8723 -3.6041 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 3.1238 -8.5743 -0.2615 33 1 1.5894 -9.3914 -0.6438 34 1 0.4918 -9.0386 -2.7774 35 1 0.7574 -8.4304 -5.1485 36 1 4.4355 -6.4711 -4.2319 37 1 4.1635 -7.0722 -1.8599 38 1 -0.1086 -9.3073 0.9334 39 1 0.1193 -9.0928 2.5840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812613870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = -149.225633 kcal Electronic energy + Delta-G solvation = -24725.149070 eV Core-core repulsion = 20849.889314 eV Total energy + Delta-G solvation = -3875.259757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00666 -40.42427 -40.12371 -37.76581 -37.36250 -35.66799 -35.25548 -33.98337 -33.12341 -32.00030 -30.32341 -28.02889 -25.89538 -24.38738 -23.78986 -22.39766 -21.86326 -21.27865 -19.30214 -18.94497 -18.40468 -18.06708 -17.76841 -16.99383 -16.79209 -16.53370 -16.43829 -16.27046 -15.72539 -15.30997 -14.61478 -14.57063 -14.46202 -14.34826 -14.27122 -14.20780 -13.72131 -13.27304 -12.89554 -12.77744 -12.60265 -12.50008 -12.47196 -12.32132 -12.17629 -12.03922 -11.77400 -11.74373 -11.46433 -11.26614 -10.97007 -10.79172 -10.59484 -9.97237 -9.55735 -8.20932 -6.34662 0.10448 0.36271 1.17024 1.17294 1.39873 1.42083 1.43629 1.54163 1.58704 2.37187 2.43466 2.65702 3.12951 3.54272 3.70646 3.77485 3.91269 3.93757 3.98646 4.04866 4.29318 4.39327 4.41467 4.43429 4.65613 4.70060 4.82955 4.89255 5.04666 5.23719 5.26614 5.29554 5.44746 5.52788 5.56093 5.78220 5.79046 5.86378 6.11940 6.27587 6.74274 6.83882 7.19332 7.35540 8.92132 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.003852 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.376394 B = 7267.402141 C = 9929.936480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.095 4.095 11 C 0.468 3.532 12 O -0.540 6.540 13 O -0.327 6.327 14 C 0.065 3.935 15 H 0.112 0.888 16 C -0.059 4.059 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.049 4.049 21 Cl -0.079 7.079 22 C -0.123 4.123 23 C -0.099 4.099 24 C 0.502 3.498 25 N -0.822 5.822 26 O -0.580 6.580 27 H 0.264 0.736 28 H -0.007 1.007 29 H -0.014 1.014 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.422 0.578 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -25.915 -7.411 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.132 4.132 11 C 0.314 3.686 12 O -0.430 6.430 13 O -0.243 6.243 14 C 0.006 3.994 15 H 0.129 0.871 16 C -0.096 4.096 17 C -0.093 4.093 18 C -0.118 4.118 19 C -0.139 4.139 20 C -0.076 4.076 21 Cl -0.050 7.050 22 C -0.142 4.142 23 C -0.117 4.117 24 C 0.286 3.714 25 N -0.389 5.389 26 O -0.459 6.459 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.004 0.996 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.255 0.745 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.814 -25.319 -7.121 26.739 hybrid contribution -0.461 0.904 -0.087 1.018 sum 4.353 -24.415 -7.208 25.827 Atomic orbital electron populations 1.70161 1.08214 1.27885 1.51259 1.26083 0.95727 1.03797 0.94418 0.85274 0.79302 0.78054 0.77644 1.17732 1.20404 1.20586 1.21654 0.94069 0.91273 1.51148 0.90561 1.18767 0.93570 0.91910 0.95323 1.21505 0.99482 0.86344 1.05901 1.24472 0.87308 0.86671 0.70197 1.90598 1.17202 1.88010 1.47145 1.86642 1.40281 1.13879 1.83454 1.22870 0.98339 0.84670 0.93500 0.87064 1.20775 1.03336 0.95582 0.89933 1.19932 0.95214 0.98706 0.95444 1.21394 0.99339 0.99526 0.91515 1.21313 0.96715 0.98274 0.97577 1.21203 0.98362 1.02506 0.85507 1.98368 1.97438 1.92374 1.16849 1.21256 0.99404 1.00610 0.92898 1.21310 0.98537 0.96716 0.95112 1.21024 0.78549 0.80676 0.91178 1.43522 1.49479 1.31853 1.13999 1.90790 1.52424 1.55237 1.47399 0.92722 0.98900 0.99596 0.87401 0.86433 0.88152 0.83862 0.81663 0.83412 0.84326 0.84124 0.74531 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.08 13.29 21.45 0.28 -58.79 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 4 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.33 4.26 29.84 0.13 2.46 16 10 C -0.10 -4.08 5.75 29.85 0.17 -3.90 16 11 C 0.47 19.25 7.92 71.24 0.56 19.81 16 12 O -0.54 -25.55 15.20 21.96 0.33 -25.22 16 13 O -0.33 -10.54 8.92 -45.04 -0.40 -10.94 16 14 C 0.06 1.51 2.34 29.85 0.07 1.58 16 15 H 0.11 2.64 7.16 -2.39 -0.02 2.62 16 16 C -0.06 -0.78 5.04 29.85 0.15 -0.63 16 17 C -0.09 -1.51 4.97 -19.86 -0.10 -1.61 16 18 C -0.10 -1.41 9.70 22.27 0.22 -1.19 16 19 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 20 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 21 Cl -0.08 -1.61 28.96 -2.72 -0.08 -1.69 16 22 C -0.12 -2.50 9.83 22.29 0.22 -2.28 16 23 C -0.10 -1.90 9.40 22.27 0.21 -1.69 16 24 C 0.50 12.52 7.42 87.66 0.65 13.17 16 25 N -0.82 -10.42 8.77 -173.53 -1.52 -11.94 16 26 O -0.58 -21.29 17.35 15.72 0.27 -21.02 16 27 H 0.26 15.55 8.31 -92.72 -0.77 14.78 16 28 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 29 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 30 H 0.11 4.34 8.14 -2.38 -0.02 4.32 16 31 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 32 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.14 0.57 7.71 -2.39 -0.02 0.55 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.42 1.71 8.54 -92.71 -0.79 0.92 16 39 H 0.41 4.50 8.93 -92.71 -0.83 3.67 16 Total: -1.00 -84.89 361.87 3.73 -81.16 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.52 Total: 9.46 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 3.33 Total: -7.65 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.24 Total: -70.73 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: 0.20 Total: -57.18 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -84.89 3.73 -81.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.071 kcal (2) G-P(sol) polarization free energy of solvation -84.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds