Wall clock time and date at job start Tue Mar 31 2020 14:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47423 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46927 * 300.00014 * 3 2 1 6 6 H 1.48504 * 109.47406 * 59.99981 * 3 2 1 7 7 C 1.37878 * 119.99208 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00212 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.45188 * 117.00097 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47407 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99488 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00290 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99828 * 180.27728 * 17 15 14 19 19 C 1.50700 * 109.46769 * 179.72341 * 18 17 15 20 20 C 1.38260 * 119.98994 * 269.71626 * 19 18 17 21 21 C 1.38227 * 120.02461 * 179.76734 * 20 19 18 22 22 C 1.38230 * 120.01196 * 0.51941 * 21 20 19 23 23 C 1.38332 * 119.98896 * 359.73821 * 22 21 20 24 24 Cl 1.73595 * 120.01515 * 180.02562 * 23 22 21 25 25 C 1.38192 * 119.99589 * 90.00027 * 19 18 17 26 26 H 0.97004 * 119.99473 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46632 * 60.00425 * 9 7 2 28 28 H 1.09002 * 109.47418 * 300.00756 * 9 7 2 29 29 H 1.09006 * 109.46823 * 60.00570 * 10 9 7 30 30 H 1.08996 * 109.47249 * 300.00360 * 10 9 7 31 31 H 1.08998 * 109.47455 * 59.99491 * 14 13 11 32 32 H 1.09002 * 109.47382 * 299.99782 * 14 13 11 33 33 H 0.97001 * 119.99727 * 359.97438 * 17 15 14 34 34 H 1.09004 * 109.46963 * 299.72135 * 18 17 15 35 35 H 1.08994 * 109.47567 * 59.72287 * 18 17 15 36 36 H 1.08001 * 119.99385 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99058 * 180.25626 * 21 20 19 38 38 H 1.08002 * 120.00558 * 179.76473 * 22 21 20 39 39 H 1.08001 * 120.00526 * 359.95731 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4914 -4.9672 -0.0025 12 8 0.2832 -4.9672 -0.0024 13 8 2.1625 -6.1298 -0.0031 14 6 1.3717 -7.3474 -0.0043 15 6 2.2896 -8.5426 -0.0055 16 8 3.4919 -8.3837 -0.0058 17 7 1.7743 -9.7880 -0.0072 18 6 2.6667 -10.9499 -0.0022 19 6 1.8458 -12.2136 0.0015 20 6 1.4731 -12.7922 1.2006 21 6 0.7161 -13.9487 1.2049 22 6 0.3403 -14.5334 0.0100 23 6 0.7173 -13.9580 -1.1901 24 17 0.2451 -14.6913 -2.6910 25 6 1.4706 -12.7972 -1.1937 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8723 -3.6049 0.8878 30 1 2.8711 -3.6041 -0.8922 31 1 0.7431 -7.3716 -0.8944 32 1 0.7425 -7.3729 0.8855 33 1 0.8127 -9.9150 -0.0073 34 1 3.2964 -10.9282 -0.8917 35 1 3.2947 -10.9219 0.8882 36 1 1.7701 -12.3381 2.1345 37 1 0.4218 -14.3979 2.1419 38 1 -0.2480 -15.4392 0.0135 39 1 1.7651 -12.3473 -2.1303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:23 Heat of formation + Delta-G solvation = -116.247149 kcal Electronic energy + Delta-G solvation = -22980.276609 eV Core-core repulsion = 19106.446907 eV Total energy + Delta-G solvation = -3873.829702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53503 -40.04419 -39.23416 -37.05456 -36.14558 -35.25169 -33.59772 -32.17919 -31.34887 -31.19987 -29.18091 -26.51721 -25.57517 -23.30804 -22.38240 -21.97025 -20.93016 -19.88184 -18.08124 -17.55134 -17.05146 -16.71487 -16.48617 -16.25629 -16.02092 -15.86418 -15.12973 -15.05969 -14.45668 -14.40342 -14.03502 -13.78508 -13.74288 -13.44661 -12.94319 -12.43615 -12.26145 -12.22450 -12.12008 -12.00965 -11.99071 -11.37730 -11.22264 -10.97684 -10.62816 -10.58228 -10.23288 -10.05920 -9.99333 -9.63287 -9.54375 -9.50401 -9.30198 -9.16791 -8.38298 -6.02151 -4.06701 0.45876 0.59380 1.57551 2.32629 2.34357 2.74423 2.99740 3.31292 3.38436 3.42175 3.50063 3.94585 4.18573 4.40680 4.44688 4.46838 4.59618 4.65907 4.85172 4.99946 5.00901 5.10914 5.21753 5.31405 5.33620 5.46583 5.58204 5.68920 5.84755 5.93533 6.12432 6.13712 6.19717 6.54584 6.85868 7.05629 7.65985 7.71924 7.87615 7.97227 8.20016 8.36912 9.00539 9.57512 11.08937 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.001613 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.754700 B =17352.218919 C =17614.907116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.459 3.541 12 O -0.505 6.505 13 O -0.342 6.342 14 C 0.045 3.955 15 C 0.518 3.482 16 O -0.512 6.512 17 N -0.729 5.729 18 C 0.164 3.836 19 C -0.096 4.096 20 C -0.095 4.095 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.037 4.037 24 Cl -0.067 7.067 25 C -0.091 4.091 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.404 0.596 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -33.419 0.442 33.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.303 3.697 12 O -0.392 6.392 13 O -0.259 6.259 14 C -0.032 4.032 15 C 0.303 3.697 16 O -0.386 6.386 17 N -0.384 5.384 18 C 0.041 3.959 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.064 4.064 24 Cl -0.038 7.038 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.239 0.761 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.222 -33.248 0.300 33.272 hybrid contribution -0.383 0.554 -0.156 0.691 sum 0.839 -32.694 0.143 32.705 Atomic orbital electron populations 1.70008 1.06096 1.26650 1.50096 1.25024 0.94869 0.99370 0.95110 0.86472 0.80060 0.83485 0.77593 1.19617 1.20974 1.20982 1.21201 0.93186 0.90583 1.51607 0.92166 1.19042 0.93224 0.89265 0.98926 1.21800 1.00715 0.87057 1.04355 1.24957 0.87983 0.85401 0.71393 1.90638 1.15789 1.87501 1.45246 1.86664 1.40656 1.13692 1.84889 1.22498 0.93025 0.82775 1.04932 1.20252 0.89295 0.83735 0.76380 1.90767 1.15139 1.85635 1.47042 1.45877 1.10618 1.04709 1.77208 1.20180 0.91164 0.80587 1.03974 1.19823 0.99924 0.97089 0.92861 1.21278 0.96711 0.95415 0.97947 1.21175 0.97793 0.95733 0.97899 1.21171 0.99830 1.00400 0.90796 1.20947 1.01503 0.96281 0.87630 1.98395 1.90854 1.82333 1.32202 1.21050 0.96960 0.94084 0.98937 0.92915 0.95535 0.95532 0.88685 0.88684 0.88318 0.88317 0.76137 0.90030 0.89899 0.84885 0.84660 0.84729 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 10 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 11 C 0.46 8.98 7.96 36.01 0.29 9.27 16 12 O -0.51 -11.05 15.73 -18.74 -0.29 -11.34 16 13 O -0.34 -5.87 9.75 -45.91 -0.45 -6.32 16 14 C 0.05 0.57 5.94 36.01 0.21 0.79 16 15 C 0.52 6.19 7.91 -10.98 -0.09 6.11 16 16 O -0.51 -8.30 16.50 -14.11 -0.23 -8.53 16 17 N -0.73 -5.69 5.55 -61.47 -0.34 -6.03 16 18 C 0.16 1.14 5.80 -5.19 -0.03 1.11 16 19 C -0.10 -0.55 5.25 -104.63 -0.55 -1.10 16 20 C -0.09 -0.46 9.70 -39.58 -0.38 -0.85 16 21 C -0.11 -0.48 10.05 -39.59 -0.40 -0.87 16 22 C -0.10 -0.53 9.83 -39.55 -0.39 -0.92 16 23 C -0.04 -0.23 6.32 -39.50 -0.25 -0.48 16 24 Cl -0.07 -0.45 28.96 -51.86 -1.50 -1.95 16 25 C -0.09 -0.56 9.49 -39.55 -0.38 -0.93 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 30 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.10 1.10 8.13 -51.93 -0.42 0.67 16 32 H 0.10 1.09 8.13 -51.93 -0.42 0.66 16 33 H 0.40 2.22 8.46 -40.82 -0.35 1.87 16 34 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -35.07 365.12 -9.20 -44.27 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.95 Total: -2.93 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.65 Total: -2.93 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.40 Total: -32.23 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.98 Total: -26.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.07 -9.20 -44.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.978 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds