Wall clock time and date at job start Tue Mar 31 2020 14:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47423 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46927 * 300.00014 * 3 2 1 6 6 H 1.48504 * 109.47406 * 59.99981 * 3 2 1 7 7 C 1.37878 * 119.99208 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00212 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.45188 * 117.00097 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47407 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99488 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00290 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99828 * 180.27728 * 17 15 14 19 19 C 1.50700 * 109.46769 * 179.72341 * 18 17 15 20 20 C 1.38260 * 119.98994 * 269.71626 * 19 18 17 21 21 C 1.38227 * 120.02461 * 179.76734 * 20 19 18 22 22 C 1.38230 * 120.01196 * 0.51941 * 21 20 19 23 23 C 1.38332 * 119.98896 * 359.73821 * 22 21 20 24 24 Cl 1.73595 * 120.01515 * 180.02562 * 23 22 21 25 25 C 1.38192 * 119.99589 * 90.00027 * 19 18 17 26 26 H 0.97004 * 119.99473 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46632 * 60.00425 * 9 7 2 28 28 H 1.09002 * 109.47418 * 300.00756 * 9 7 2 29 29 H 1.09006 * 109.46823 * 60.00570 * 10 9 7 30 30 H 1.08996 * 109.47249 * 300.00360 * 10 9 7 31 31 H 1.08998 * 109.47455 * 59.99491 * 14 13 11 32 32 H 1.09002 * 109.47382 * 299.99782 * 14 13 11 33 33 H 0.97001 * 119.99727 * 359.97438 * 17 15 14 34 34 H 1.09004 * 109.46963 * 299.72135 * 18 17 15 35 35 H 1.08994 * 109.47567 * 59.72287 * 18 17 15 36 36 H 1.08001 * 119.99385 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99058 * 180.25626 * 21 20 19 38 38 H 1.08002 * 120.00558 * 179.76473 * 22 21 20 39 39 H 1.08001 * 120.00526 * 359.95731 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4914 -4.9672 -0.0025 12 8 0.2832 -4.9672 -0.0024 13 8 2.1625 -6.1298 -0.0031 14 6 1.3717 -7.3474 -0.0043 15 6 2.2896 -8.5426 -0.0055 16 8 3.4919 -8.3837 -0.0058 17 7 1.7743 -9.7880 -0.0072 18 6 2.6667 -10.9499 -0.0022 19 6 1.8458 -12.2136 0.0015 20 6 1.4731 -12.7922 1.2006 21 6 0.7161 -13.9487 1.2049 22 6 0.3403 -14.5334 0.0100 23 6 0.7173 -13.9580 -1.1901 24 17 0.2451 -14.6913 -2.6910 25 6 1.4706 -12.7972 -1.1937 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8723 -3.6049 0.8878 30 1 2.8711 -3.6041 -0.8922 31 1 0.7431 -7.3716 -0.8944 32 1 0.7425 -7.3729 0.8855 33 1 0.8127 -9.9150 -0.0073 34 1 3.2964 -10.9282 -0.8917 35 1 3.2947 -10.9219 0.8882 36 1 1.7701 -12.3381 2.1345 37 1 0.4218 -14.3979 2.1419 38 1 -0.2480 -15.4392 0.0135 39 1 1.7651 -12.3473 -2.1303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:23 Heat of formation + Delta-G solvation = -137.096872 kcal Electronic energy + Delta-G solvation = -22981.180721 eV Core-core repulsion = 19106.446907 eV Total energy + Delta-G solvation = -3874.733814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72929 -40.89295 -40.09550 -37.65317 -37.47676 -36.03578 -35.64370 -33.20801 -32.74359 -31.75029 -30.21716 -27.98259 -26.73355 -24.14214 -23.70394 -22.54449 -21.86236 -21.50771 -19.17404 -18.81396 -18.21013 -17.93421 -17.73420 -17.14564 -16.88073 -16.56328 -16.43999 -16.18944 -16.14586 -15.07242 -14.91466 -14.74947 -14.45945 -14.26736 -14.05905 -14.00976 -13.84169 -13.52644 -13.16161 -12.85338 -12.57855 -12.48413 -12.47269 -12.41422 -12.01729 -11.86524 -11.84045 -11.75621 -11.52838 -11.28583 -11.13376 -10.57437 -10.29417 -10.01243 -9.74281 -8.19596 -6.32651 0.02646 0.18641 1.11817 1.18333 1.28073 1.38121 1.44969 1.45098 1.58998 2.26771 2.44857 2.69780 3.14488 3.46056 3.58284 3.80772 3.91931 4.01076 4.05390 4.09194 4.20778 4.23075 4.43879 4.45441 4.46346 4.62641 4.73484 4.88965 4.89301 5.17224 5.19661 5.26392 5.31841 5.42968 5.48306 5.56736 5.75982 5.81642 6.14394 6.30431 6.74009 6.85927 7.01997 7.37389 8.93133 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.001613 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.754700 B =17352.218919 C =17614.907116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.039 3.961 10 C -0.096 4.096 11 C 0.471 3.529 12 O -0.535 6.535 13 O -0.346 6.346 14 C 0.037 3.963 15 C 0.525 3.475 16 O -0.559 6.559 17 N -0.707 5.707 18 C 0.165 3.835 19 C -0.098 4.098 20 C -0.094 4.094 21 C -0.106 4.106 22 C -0.106 4.106 23 C -0.051 4.051 24 Cl -0.076 7.076 25 C -0.099 4.099 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.006 1.006 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.418 0.582 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -34.336 1.161 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.002 3.998 10 C -0.133 4.133 11 C 0.316 3.684 12 O -0.424 6.424 13 O -0.262 6.262 14 C -0.040 4.040 15 C 0.310 3.690 16 O -0.437 6.437 17 N -0.361 5.361 18 C 0.043 3.957 19 C -0.099 4.099 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.077 4.077 24 Cl -0.048 7.048 25 C -0.118 4.118 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.012 0.988 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.092 -34.227 1.018 34.306 hybrid contribution -0.709 0.669 -0.362 1.040 sum 1.383 -33.558 0.656 33.593 Atomic orbital electron populations 1.70158 1.08103 1.27853 1.51299 1.26064 0.95749 1.03731 0.94536 0.85274 0.79225 0.78174 0.77586 1.17934 1.20591 1.20560 1.21678 0.94098 0.91394 1.51042 0.90651 1.18812 0.93620 0.91648 0.95769 1.21536 0.99495 0.86016 1.06236 1.24492 0.87191 0.85981 0.70776 1.90630 1.16913 1.88052 1.46788 1.86591 1.41043 1.14310 1.84235 1.22892 0.93202 0.81074 1.06829 1.20108 0.88365 0.84520 0.75974 1.90755 1.16837 1.86325 1.49788 1.45732 1.11589 1.03712 1.75087 1.20212 0.91154 0.80544 1.03810 1.19665 1.00338 0.96674 0.93200 1.21500 0.96213 0.95481 0.98095 1.21465 0.96990 0.95318 0.98572 1.21423 0.99591 1.00788 0.90636 1.21074 1.02252 0.96661 0.87725 1.98390 1.90973 1.82472 1.32929 1.21096 0.97227 0.94317 0.99174 0.92734 0.98822 0.98756 0.86737 0.86808 0.86589 0.86360 0.74494 0.90601 0.89747 0.83448 0.82270 0.83443 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 9 C 0.04 2.09 4.26 29.85 0.13 2.21 16 10 C -0.10 -3.90 5.75 29.85 0.17 -3.72 16 11 C 0.47 18.25 7.96 71.24 0.57 18.82 16 12 O -0.53 -23.56 15.73 21.98 0.35 -23.21 16 13 O -0.35 -11.51 9.75 -45.09 -0.44 -11.95 16 14 C 0.04 0.88 5.94 71.24 0.42 1.30 16 15 C 0.52 11.92 7.91 87.66 0.69 12.61 16 16 O -0.56 -17.83 16.50 15.76 0.26 -17.57 16 17 N -0.71 -9.90 5.55 -466.79 -2.59 -12.49 16 18 C 0.17 2.09 5.80 85.63 0.50 2.59 16 19 C -0.10 -0.97 5.25 -19.87 -0.10 -1.08 16 20 C -0.09 -0.70 9.70 22.27 0.22 -0.49 16 21 C -0.11 -0.66 10.05 22.27 0.22 -0.44 16 22 C -0.11 -0.90 9.83 22.29 0.22 -0.68 16 23 C -0.05 -0.59 6.32 22.32 0.14 -0.44 16 24 Cl -0.08 -0.99 28.96 -2.72 -0.08 -1.07 16 25 C -0.10 -1.12 9.49 22.29 0.21 -0.91 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H -0.01 -0.40 8.10 -2.38 -0.02 -0.42 16 28 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 29 H 0.11 4.22 8.14 -2.38 -0.02 4.20 16 30 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 31 H 0.12 2.39 8.13 -2.39 -0.02 2.37 16 32 H 0.12 2.38 8.13 -2.39 -0.02 2.37 16 33 H 0.42 3.70 8.46 -92.71 -0.78 2.91 16 34 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 35 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.73 365.12 4.18 -72.54 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.29 Total: 5.43 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.08 Total: -0.17 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -2.30 Total: -69.87 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: 0.17 Total: -52.73 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -76.73 4.18 -72.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.556 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds