Wall clock time and date at job start Tue Mar 31 2020 14:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47338 * 267.45290 * 3 2 1 5 5 H 1.48499 * 109.47090 * 147.45040 * 3 2 1 6 6 H 1.48505 * 109.46981 * 27.45036 * 3 2 1 7 7 C 1.38895 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99870 * 1.55756 * 7 2 1 9 9 N 1.37135 * 119.99811 * 181.55500 * 7 2 1 10 10 C 1.34778 * 119.99827 * 123.57403 * 9 7 2 11 11 O 1.21284 * 120.00271 * 183.25232 * 10 9 7 12 12 C 1.50702 * 119.99914 * 3.26170 * 10 9 7 13 13 O 1.45204 * 109.46958 * 184.98278 * 12 10 9 14 14 C 1.34227 * 116.99846 * 184.92057 * 13 12 10 15 15 O 1.20827 * 120.00249 * 5.07089 * 14 13 12 16 16 C 1.50701 * 120.00047 * 185.07265 * 14 13 12 17 17 H 1.09003 * 115.55006 * 34.41806 * 16 14 13 18 18 C 1.52990 * 117.49889 * 248.74586 * 16 14 13 19 19 C 1.52995 * 117.49839 * 180.08502 * 16 14 13 20 20 F 1.39908 * 117.50068 * 214.98085 * 19 16 14 21 21 F 1.39900 * 117.49996 * 359.97438 * 19 16 14 22 22 C 1.39794 * 120.00334 * 303.57978 * 9 7 2 23 23 C 1.38959 * 120.07772 * 171.88864 * 22 9 7 24 24 C 1.38085 * 119.92006 * 179.81024 * 23 22 9 25 25 C 1.38308 * 120.07694 * 0.44066 * 24 23 22 26 26 C 1.38312 * 120.15487 * 359.79371 * 25 24 23 27 27 C 1.38081 * 120.08093 * 359.97438 * 26 25 24 28 28 H 0.96992 * 120.00402 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46870 * 304.97753 * 12 10 9 30 30 H 1.08991 * 109.47181 * 64.98165 * 12 10 9 31 31 H 1.09004 * 117.50299 * 0.02562 * 18 16 14 32 32 H 1.09005 * 117.50098 * 145.02353 * 18 16 14 33 33 H 1.08000 * 120.03985 * 0.02562 * 23 22 9 34 34 H 1.07996 * 119.96198 * 180.20672 * 24 23 22 35 35 H 1.08000 * 119.92354 * 179.76677 * 25 24 23 36 36 H 1.08001 * 119.96073 * 179.97438 * 26 25 24 37 37 H 1.07996 * 120.04181 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.5496 2.0153 -1.3987 5 1 3.5177 1.4563 0.7533 6 1 1.4196 2.6676 0.6454 7 6 2.0087 -1.2029 -0.0005 8 1 1.4690 -2.1379 -0.0264 9 7 3.3796 -1.2030 0.0317 10 6 4.0306 -1.8622 1.0106 11 8 5.2408 -1.8137 1.0735 12 6 3.2546 -2.6597 2.0270 13 8 4.1640 -3.1732 3.0359 14 6 3.6451 -3.9934 3.9631 15 8 2.4924 -4.3462 3.8806 16 6 4.5002 -4.4744 5.1070 17 1 5.2386 -3.7615 5.4741 18 6 4.8757 -5.9572 5.1335 19 6 3.8512 -5.4089 6.1298 20 9 4.2513 -5.2835 7.4646 21 9 2.5092 -5.7512 5.9319 22 6 4.1020 -0.5195 -0.9507 23 6 5.4788 -0.3752 -0.8290 24 6 6.1897 0.2972 -1.8032 25 6 5.5318 0.8347 -2.8947 26 6 4.1610 0.6972 -3.0166 27 6 3.4443 0.0219 -2.0486 28 1 -0.4850 0.8399 0.0004 29 1 2.5109 -2.0189 2.5007 30 1 2.7547 -3.4916 1.5312 31 1 4.5047 -6.5850 4.3233 32 1 5.8611 -6.2201 5.5184 33 1 5.9926 -0.7915 0.0249 34 1 7.2601 0.4068 -1.7110 35 1 6.0898 1.3634 -3.6533 36 1 3.6504 1.1185 -3.8700 37 1 2.3740 -0.0855 -2.1446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837987991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:23 Heat of formation + Delta-G solvation = -137.511418 kcal Electronic energy + Delta-G solvation = -27136.795429 eV Core-core repulsion = 22710.246958 eV Total energy + Delta-G solvation = -4426.548470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.79580 -48.47001 -42.12830 -41.51289 -39.30485 -37.95647 -37.02509 -36.75303 -34.26299 -31.78845 -31.61867 -29.44577 -27.27071 -26.18880 -23.78574 -23.60320 -23.05286 -21.81954 -21.41510 -20.05475 -19.67981 -18.40895 -18.30437 -18.01577 -17.72760 -17.56026 -17.26032 -17.04112 -16.58899 -16.32332 -15.83794 -15.40405 -15.10752 -15.04857 -14.85666 -14.75866 -14.64526 -14.49620 -14.38808 -14.17190 -13.85753 -13.73981 -13.39805 -13.23045 -12.66913 -12.48811 -12.44414 -12.13986 -11.99461 -11.91473 -11.80354 -11.30394 -11.25578 -10.95389 -10.26080 -9.64005 -8.91683 -8.58146 -6.64061 0.35568 0.53874 0.67379 1.01631 1.22026 1.28681 1.36237 1.61211 1.86165 2.01452 2.09578 2.38368 2.67193 3.02654 3.05579 3.25443 3.42504 3.55397 3.70203 4.02444 4.13246 4.18229 4.21249 4.40572 4.46027 4.53086 4.66215 4.70415 4.75998 4.82079 5.13540 5.21370 5.45086 5.55138 5.64297 5.71190 5.88799 5.95708 6.33262 6.42347 6.73084 7.05405 7.35554 8.42638 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.003363 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.234309 B = 8322.765180 C = 9286.285089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.225 1.225 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.413 5.413 10 C 0.497 3.503 11 O -0.550 6.550 12 C 0.079 3.921 13 O -0.334 6.334 14 C 0.484 3.516 15 O -0.518 6.518 16 C -0.175 4.175 17 H 0.190 0.810 18 C -0.103 4.103 19 C 0.211 3.789 20 F -0.152 7.152 21 F -0.162 7.162 22 C 0.120 3.880 23 C -0.200 4.200 24 C -0.106 4.106 25 C -0.152 4.152 26 C -0.108 4.108 27 C -0.169 4.169 28 H 0.286 0.714 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.756 -5.600 5.120 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.149 1.149 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.500 4.500 8 H 0.108 0.892 9 N -0.125 5.125 10 C 0.288 3.712 11 O -0.433 6.433 12 C 0.003 3.997 13 O -0.249 6.249 14 C 0.327 3.673 15 O -0.406 6.406 16 C -0.195 4.195 17 H 0.207 0.793 18 C -0.140 4.140 19 C 0.174 3.826 20 F -0.132 7.132 21 F -0.143 7.143 22 C 0.026 3.974 23 C -0.220 4.220 24 C -0.124 4.124 25 C -0.171 4.171 26 C -0.126 4.126 27 C -0.189 4.189 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.201 0.799 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.702 -5.631 5.173 13.979 hybrid contribution -1.027 0.845 0.138 1.337 sum 10.675 -4.786 5.311 12.848 Atomic orbital electron populations 1.69691 1.07118 1.29775 1.45187 1.25887 0.95522 1.00974 0.92409 0.86414 0.78319 0.80110 0.81440 1.14856 1.20645 1.21430 1.18873 0.78132 0.95433 1.57542 0.89187 1.41268 1.06590 1.44319 1.20354 1.20521 0.87194 0.81608 0.81873 1.90250 1.14463 1.64537 1.74064 1.22401 0.90387 0.98862 0.88062 1.86442 1.42174 1.58706 1.37596 1.22899 0.86431 0.75743 0.82179 1.90776 1.19541 1.55448 1.74860 1.23294 1.02711 0.99964 0.93515 0.79275 1.24667 1.01277 0.90266 0.97778 1.19940 0.79317 1.05608 0.77752 1.93066 1.89630 1.96274 1.34243 1.93094 1.34173 1.92483 1.94535 1.18760 0.92123 0.96387 0.90151 1.22788 0.92825 1.02813 1.03538 1.21444 1.00849 0.96544 0.93582 1.21444 0.94114 1.02087 0.99405 1.21251 0.95009 0.98076 0.98298 1.21050 1.00883 1.02198 0.94789 0.90374 0.87902 0.87736 0.84531 0.79875 0.81692 0.83325 0.82753 0.83785 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.56 13.96 21.65 0.30 -47.26 16 2 C 0.06 3.12 4.63 84.91 0.39 3.51 16 3 Si 0.91 42.06 24.08 68.60 1.65 43.71 16 4 H -0.23 -9.57 5.67 99.48 0.56 -9.01 16 5 H -0.28 -13.84 6.95 99.48 0.69 -13.15 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.37 -19.11 7.78 84.02 0.65 -18.45 16 8 H 0.09 4.88 8.03 -2.91 -0.02 4.86 16 9 N -0.41 -19.89 2.26 -458.89 -1.04 -20.92 16 10 C 0.50 22.57 7.65 87.66 0.67 23.24 16 11 O -0.55 -25.48 12.92 15.71 0.20 -25.27 16 12 C 0.08 3.18 4.92 71.24 0.35 3.53 16 13 O -0.33 -11.76 9.76 -45.05 -0.44 -12.20 16 14 C 0.48 14.88 7.73 71.24 0.55 15.43 16 15 O -0.52 -19.27 14.80 21.96 0.33 -18.94 16 16 C -0.18 -3.44 6.28 -11.54 -0.07 -3.51 16 17 H 0.19 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.10 -1.27 10.21 30.61 0.31 -0.96 16 19 C 0.21 4.30 5.19 30.62 0.16 4.46 16 20 F -0.15 -2.99 17.60 44.97 0.79 -2.20 16 21 F -0.16 -4.61 15.72 44.97 0.71 -3.90 16 22 C 0.12 5.48 4.43 38.22 0.17 5.65 16 23 C -0.20 -8.32 9.03 22.41 0.20 -8.11 16 24 C -0.11 -3.49 10.04 22.25 0.22 -3.26 16 25 C -0.15 -4.55 10.04 22.30 0.22 -4.32 16 26 C -0.11 -3.69 9.67 22.25 0.22 -3.47 16 27 C -0.17 -7.16 5.66 22.41 0.13 -7.04 16 28 H 0.29 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.10 4.28 7.90 -2.39 -0.02 4.26 16 30 H 0.10 4.09 7.97 -2.39 -0.02 4.07 16 31 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.18 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.17 7.27 4.58 -58.89 -0.27 7.00 16 34 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.12 5.46 5.78 -2.91 -0.02 5.45 16 Total: -1.00 -67.02 325.26 7.40 -59.62 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.72 Total: 20.69 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 4.18 Total: 6.68 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.74 Total: -68.18 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: 0.09 Total: -56.42 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.50 Total: -6.10 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.65 Total: 43.71 kcal Total: -67.02 7.40 -59.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837987991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.892 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds