Wall clock time and date at job start Tue Mar 31 2020 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 119.99675 * 2 1 4 4 H 1.48499 * 109.46749 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46978 * 299.99928 * 3 2 1 6 6 H 1.48498 * 109.47059 * 60.00214 * 3 2 1 7 7 C 1.38797 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00229 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.76203 * 100.00046 * 174.92580 * 9 7 2 11 11 C 1.39115 * 120.18642 * 8.01705 * 10 9 7 12 12 C 1.37914 * 120.04685 * 179.74260 * 11 10 9 13 13 C 1.38657 * 120.44021 * 0.27738 * 12 11 10 14 14 C 1.37802 * 120.38133 * 359.97438 * 13 12 11 15 15 C 1.39679 * 119.93905 * 359.97438 * 14 13 12 16 16 C 1.47432 * 120.21454 * 180.02562 * 15 14 13 17 17 O 1.21617 * 119.99762 * 231.84370 * 16 15 14 18 18 N 1.34771 * 120.00119 * 51.85024 * 16 15 14 19 19 C 1.47151 * 120.98180 * 5.30463 * 18 16 15 20 20 C 1.53705 * 108.16316 * 129.43612 * 19 18 16 21 21 O 1.42962 * 109.14973 * 52.53310 * 20 19 18 22 22 C 1.42961 * 114.17016 * 297.29418 * 21 20 19 23 23 H 1.08998 * 109.55191 * 302.62906 * 22 21 20 24 24 C 1.52996 * 109.51366 * 182.50459 * 22 21 20 25 25 F 1.39900 * 109.47367 * 65.25034 * 24 22 21 26 26 C 1.47150 * 120.97957 * 185.58856 * 18 16 15 27 27 H 0.97000 * 120.00533 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97759 * 0.02562 * 11 10 9 29 29 H 1.08005 * 119.77983 * 180.25207 * 12 11 10 30 30 H 1.08004 * 119.81014 * 179.97438 * 13 12 11 31 31 H 1.08003 * 120.03241 * 180.02562 * 14 13 12 32 32 H 1.09004 * 109.67941 * 249.21784 * 19 18 16 33 33 H 1.09000 * 109.68136 * 9.76252 * 19 18 16 34 34 H 1.09003 * 109.65657 * 292.57042 * 20 19 18 35 35 H 1.09001 * 109.44720 * 172.37399 * 20 19 18 36 36 H 1.08998 * 109.47253 * 185.25569 * 24 22 21 37 37 H 1.09003 * 109.47040 * 305.25079 * 24 22 21 38 38 H 1.08993 * 109.68866 * 350.23310 * 26 18 16 39 39 H 1.08998 * 109.68268 * 110.78858 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7094 1.3464 0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0095 -1.2020 -0.0005 8 1 3.0895 -1.2020 -0.0010 9 16 1.1285 -2.7280 -0.0019 10 6 2.4725 -3.8571 -0.1556 11 6 3.7835 -3.4003 -0.0670 12 6 4.8332 -4.2873 -0.1824 13 6 4.5928 -5.6366 -0.3928 14 6 3.3013 -6.1078 -0.4886 15 6 2.2263 -5.2235 -0.3730 16 6 0.8422 -5.7211 -0.4740 17 8 0.0623 -5.1967 -1.2460 18 7 0.4411 -6.7569 0.2892 19 6 1.3287 -7.3327 1.3119 20 6 0.5484 -7.4123 2.6337 21 8 -0.6870 -8.0956 2.4086 22 6 -1.5652 -7.4319 1.4965 23 1 -1.7758 -6.4259 1.8595 24 6 -2.8727 -8.2181 1.3822 25 9 -3.5394 -8.1957 2.6120 26 6 -0.8952 -7.3495 0.1201 27 1 -0.4851 0.8400 -0.0004 28 1 3.9794 -2.3509 0.0969 29 1 5.8492 -3.9286 -0.1088 30 1 5.4224 -6.3223 -0.4821 31 1 3.1205 -7.1599 -0.6521 32 1 1.6417 -8.3311 1.0063 33 1 2.2042 -6.6958 1.4388 34 1 0.3463 -6.4063 3.0014 35 1 1.1375 -7.9584 3.3705 36 1 -3.5040 -7.7643 0.6183 37 1 -2.6535 -9.2496 1.1065 38 1 -1.4932 -6.7240 -0.5424 39 1 -0.8024 -8.3496 -0.3033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840483187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:45 Heat of formation + Delta-G solvation = -116.904313 kcal Electronic energy + Delta-G solvation = -25282.045031 eV Core-core repulsion = 21422.603328 eV Total energy + Delta-G solvation = -3859.441703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.61308 -41.59145 -39.82665 -38.82933 -35.86460 -34.82420 -33.81149 -32.07654 -31.87509 -29.57556 -27.92354 -27.33879 -24.74178 -24.16427 -23.49903 -22.45823 -20.93812 -19.72762 -18.58534 -18.12752 -17.68933 -17.46539 -17.17006 -16.97532 -16.68940 -16.40355 -16.10390 -15.85309 -15.73972 -15.29528 -15.16628 -14.84569 -14.64672 -14.28858 -14.23680 -13.79393 -13.40702 -13.24346 -13.01888 -12.88095 -12.74713 -12.66128 -12.16740 -12.11554 -12.06687 -11.75085 -11.52243 -11.44316 -11.31320 -11.04546 -10.55665 -10.33468 -9.84050 -9.61005 -8.53876 -8.51676 -6.31332 0.11928 0.48677 1.23763 1.34734 1.43975 1.55353 1.61483 1.87896 2.15569 2.51068 2.79058 2.92262 3.13646 3.33773 3.55107 3.67981 3.83964 3.89703 4.01590 4.11182 4.16670 4.23357 4.26152 4.32434 4.49917 4.57669 4.59117 4.61325 4.71268 4.80093 4.81803 4.91428 5.06248 5.31668 5.37293 5.45804 5.53061 5.64844 5.94312 6.05269 6.12319 6.21851 6.90113 7.08219 8.56176 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004121 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.234073 B = 6793.617471 C = 8227.686811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.572 4.572 8 H 0.101 0.899 9 S -0.013 6.013 10 C -0.067 4.067 11 C -0.168 4.168 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.060 4.060 15 C -0.166 4.166 16 C 0.564 3.436 17 O -0.562 6.562 18 N -0.613 5.613 19 C 0.071 3.929 20 C 0.046 3.954 21 O -0.377 6.377 22 C 0.045 3.955 23 H 0.047 0.953 24 C 0.075 3.925 25 F -0.228 7.228 26 C 0.087 3.913 27 H 0.276 0.724 28 H 0.120 0.880 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -19.095 3.015 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.719 4.719 8 H 0.119 0.881 9 S 0.243 5.757 10 C -0.184 4.184 11 C -0.193 4.193 12 C -0.093 4.093 13 C -0.168 4.168 14 C -0.080 4.080 15 C -0.178 4.178 16 C 0.354 3.646 17 O -0.441 6.441 18 N -0.347 5.347 19 C -0.050 4.050 20 C -0.031 4.031 21 O -0.296 6.296 22 C -0.014 4.014 23 H 0.065 0.935 24 C 0.021 3.979 25 F -0.210 7.210 26 C -0.035 4.035 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.173 0.827 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.856 -18.850 2.837 19.449 hybrid contribution 1.180 2.103 -0.141 2.416 sum 5.036 -16.747 2.697 17.695 Atomic orbital electron populations 1.70133 1.08097 1.29239 1.46645 1.26206 0.95955 1.03605 0.92676 0.84897 0.78833 0.75880 0.78390 1.17718 1.19715 1.19401 1.23818 0.96544 0.91852 1.59699 0.88127 1.84080 1.08973 0.98677 1.83970 1.22712 0.99281 0.96550 0.99841 1.21450 0.91683 1.01060 1.05120 1.21531 0.98784 0.93640 0.95371 1.21334 0.96895 0.95487 1.03068 1.21358 0.91299 0.99029 0.96303 1.19375 0.93373 0.92660 1.12435 1.18585 0.87665 0.78618 0.79742 1.90792 1.55646 1.57492 1.40144 1.48082 1.16445 1.32954 1.37185 1.22868 0.93682 1.01244 0.87250 1.23249 0.85085 0.97742 0.97042 1.87942 1.28880 1.48801 1.63970 1.23115 0.91493 0.96671 0.90120 0.93493 1.22157 0.89484 1.03843 0.82465 1.92749 1.82193 1.98115 1.47903 1.22211 0.83742 1.00691 0.96901 0.91466 0.86218 0.83076 0.81456 0.82749 0.86980 0.88143 0.94558 0.83985 0.86794 0.86842 0.89410 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.64 0.29 -54.70 16 2 C 0.02 1.20 5.49 84.87 0.47 1.66 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.57 -32.80 9.08 67.95 0.62 -32.19 16 8 H 0.10 5.40 4.85 -2.91 -0.01 5.38 16 9 S -0.01 -0.73 19.83 -56.49 -1.12 -1.85 16 10 C -0.07 -3.04 6.13 23.04 0.14 -2.90 16 11 C -0.17 -6.67 9.25 22.40 0.21 -6.47 16 12 C -0.07 -2.05 10.03 22.29 0.22 -1.83 16 13 C -0.15 -3.31 10.02 22.27 0.22 -3.09 16 14 C -0.06 -1.58 7.74 22.51 0.17 -1.40 16 15 C -0.17 -6.24 4.70 -19.95 -0.09 -6.33 16 16 C 0.56 21.97 6.61 86.67 0.57 22.54 16 17 O -0.56 -27.25 15.38 -4.08 -0.06 -27.31 16 18 N -0.61 -17.62 3.01 -820.42 -2.47 -20.09 16 19 C 0.07 1.46 5.61 86.49 0.49 1.95 16 20 C 0.05 0.95 7.00 72.22 0.51 1.45 16 21 O -0.38 -8.78 10.38 -148.98 -1.55 -10.33 16 22 C 0.05 1.07 3.14 30.69 0.10 1.17 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 C 0.08 1.35 7.21 71.98 0.52 1.87 16 25 F -0.23 -5.66 17.35 44.97 0.78 -4.88 16 26 C 0.09 2.10 5.94 86.35 0.51 2.62 16 27 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.12 5.16 4.98 -2.91 -0.01 5.15 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.15 2.88 7.60 -2.91 -0.02 2.86 16 32 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.10 2.17 5.50 -2.39 -0.01 2.16 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 2.48 7.06 -2.39 -0.02 2.46 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -80.62 339.41 3.63 -77.00 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.09 Total: 17.86 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.65 Total: -20.94 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.19 Total: -74.79 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.61 Total: -37.64 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.12 Total: -1.85 kcal Total: -80.62 3.63 -77.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840483187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.909 kcal (2) G-P(sol) polarization free energy of solvation -80.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds