Wall clock time and date at job start Tue Mar 31 2020 14:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 120.00347 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00069 * 3 2 1 5 5 H 1.48503 * 109.47395 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46936 * 120.00226 * 3 2 1 7 7 C 1.38655 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00355 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.35761 * 117.00355 * 185.06328 * 9 7 2 11 11 C 1.38898 * 120.05325 * 354.40260 * 10 9 7 12 12 C 1.38067 * 119.94610 * 179.97438 * 11 10 9 13 13 C 1.38426 * 120.05233 * 359.97438 * 12 11 10 14 14 Cl 1.73605 * 119.94304 * 180.02562 * 13 12 11 15 15 C 1.38394 * 120.11686 * 359.79265 * 13 12 11 16 16 C 1.38107 * 120.05130 * 0.46038 * 15 13 12 17 17 C 1.50693 * 120.02920 * 179.79491 * 16 15 13 18 18 O 1.42900 * 109.47380 * 359.72206 * 17 16 15 19 19 N 1.41594 * 114.00563 * 179.97438 * 18 17 16 20 20 C 1.34778 * 120.00131 * 180.02562 * 19 18 17 21 21 O 1.21277 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99572 * 180.02562 * 20 19 18 23 23 C 1.53790 * 113.61125 * 179.97438 * 22 20 19 24 24 C 1.53781 * 87.17192 * 139.93751 * 23 22 20 25 25 C 1.53777 * 113.61571 * 277.48956 * 22 20 19 26 26 H 0.97003 * 119.99536 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.02603 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.97274 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.97335 * 180.23076 * 15 13 12 30 30 H 1.09001 * 109.47477 * 239.72282 * 17 16 15 31 31 H 1.09000 * 109.47519 * 119.72503 * 17 16 15 32 32 H 0.97001 * 119.99893 * 0.02562 * 19 18 17 33 33 H 1.08998 * 112.85374 * 48.80462 * 22 20 19 34 34 H 1.09002 * 113.61436 * 254.52832 * 23 22 20 35 35 H 1.08998 * 113.61100 * 25.34752 * 23 22 20 36 36 H 1.08994 * 113.61229 * 89.15998 * 24 23 22 37 37 H 1.08999 * 113.61366 * 220.06153 * 24 23 22 38 38 H 1.09005 * 113.61514 * 334.57629 * 25 22 20 39 39 H 1.09005 * 113.61252 * 105.39170 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4395 0.0910 12 6 4.2029 -4.5964 0.1997 13 6 3.5688 -5.8207 0.3238 14 17 4.5091 -7.2736 0.4609 15 6 2.1866 -5.8880 0.3435 16 6 1.4363 -4.7341 0.2299 17 6 -0.0687 -4.8084 0.2468 18 8 -0.4768 -6.1712 0.3824 19 7 -1.8809 -6.3520 0.4097 20 6 -2.3987 -7.5900 0.5345 21 8 -1.6619 -8.5493 0.6229 22 6 -3.8931 -7.7824 0.5629 23 6 -4.3223 -9.2519 0.7091 24 6 -5.4236 -8.7560 1.6611 25 6 -4.5188 -7.5433 1.9471 26 1 -0.4849 0.8401 0.0004 27 1 3.9525 -2.4844 -0.0045 28 1 5.2817 -4.5463 0.1879 29 1 1.6944 -6.8439 0.4442 30 1 -0.4631 -4.4021 -0.6846 31 1 -0.4517 -4.2291 1.0868 32 1 -2.4702 -5.5847 0.3385 33 1 -4.4029 -7.2573 -0.2449 34 1 -4.7062 -9.6885 -0.2129 35 1 -3.5747 -9.8788 1.1952 36 1 -6.3537 -8.4969 1.1554 37 1 -5.5765 -9.4017 2.5258 38 1 -3.8255 -7.7026 2.7731 39 1 -5.0600 -6.6003 2.0246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842112428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:59 Heat of formation + Delta-G solvation = -41.129774 kcal Electronic energy + Delta-G solvation = -24270.519777 eV Core-core repulsion = 20399.947409 eV Total energy + Delta-G solvation = -3870.572368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25982 -41.06272 -39.02976 -38.47875 -37.82378 -37.00404 -34.35872 -34.02553 -32.16453 -30.63735 -27.84692 -27.36203 -26.84202 -26.50766 -23.49571 -22.75527 -22.20126 -20.38896 -19.99382 -19.14768 -18.99654 -18.24655 -17.12943 -17.00853 -16.61458 -16.38057 -16.21702 -16.00418 -15.70828 -15.41564 -15.16591 -14.93187 -14.65881 -13.97450 -13.89321 -13.68104 -13.59885 -13.40203 -13.06333 -12.81838 -12.74287 -12.71600 -12.54831 -12.16551 -12.16113 -11.93369 -11.82835 -11.43561 -11.34577 -11.29565 -10.90975 -10.77786 -10.11732 -9.85462 -9.02331 -8.50840 -6.17742 0.27227 0.37257 0.76110 1.28270 1.39175 1.47368 1.50302 1.53088 2.15474 2.59434 3.04100 3.26792 3.29270 3.44243 3.60694 3.69130 3.76282 3.91337 3.97353 4.12398 4.23479 4.28028 4.28912 4.44013 4.68853 4.71391 4.81032 4.87629 4.94484 5.04723 5.05190 5.12511 5.15854 5.20247 5.35950 5.42577 5.52842 5.71528 5.81470 5.94475 6.24181 6.93754 7.18266 7.62754 8.69906 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003486 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.698798 B = 8030.797761 C =10915.794629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.010 4.010 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.107 0.893 9 O -0.205 6.205 10 C 0.140 3.860 11 C -0.223 4.223 12 C -0.050 4.050 13 C -0.114 4.114 14 Cl -0.076 7.076 15 C -0.047 4.047 16 C -0.160 4.160 17 C 0.112 3.888 18 O -0.167 6.167 19 N -0.587 5.587 20 C 0.526 3.474 21 O -0.576 6.576 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.125 4.125 26 H 0.275 0.725 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.424 0.576 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -9.687 1.464 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.124 0.876 9 O -0.110 6.110 10 C 0.087 3.913 11 C -0.242 4.242 12 C -0.069 4.069 13 C -0.141 4.141 14 Cl -0.048 7.048 15 C -0.066 4.066 16 C -0.163 4.163 17 C 0.035 3.965 18 O -0.172 6.172 19 N -0.289 5.289 20 C 0.316 3.684 21 O -0.454 6.454 22 C -0.144 4.144 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.163 4.163 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.707 -10.449 1.531 12.510 hybrid contribution 0.546 1.283 -0.120 1.400 sum -6.161 -9.166 1.411 11.134 Atomic orbital electron populations 1.70128 1.07758 1.29102 1.47390 1.26446 0.96791 1.02334 0.95422 0.84715 0.77528 0.74608 0.79908 1.18252 1.19807 1.18326 1.21819 0.92799 0.80964 1.53742 0.87584 1.83930 1.35385 1.12130 1.79589 1.19354 0.91352 0.86921 0.93649 1.21211 0.92509 0.99884 1.10579 1.20974 1.00878 0.89306 0.95708 1.20515 0.91291 0.87850 1.14419 1.98301 1.72598 1.36851 1.97027 1.20474 0.91813 0.97534 0.96799 1.18530 0.93544 0.90979 1.13250 1.21102 0.91749 0.81957 1.01695 1.90490 1.03942 1.26032 1.96755 1.47854 0.94530 1.10352 1.76150 1.21780 0.91969 0.80155 0.74530 1.90684 1.62407 1.41068 1.51260 1.23064 0.86186 1.02041 1.03078 1.22878 0.98481 0.93304 1.01509 1.22849 0.97296 0.96542 0.99677 1.22961 0.98606 1.01335 0.93423 0.91611 0.83830 0.82786 0.84941 0.91122 0.91267 0.73404 0.83236 0.89499 0.91128 0.87365 0.90331 0.91103 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.26 13.67 21.61 0.30 -49.96 16 2 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 3 Si 1.01 39.10 29.55 68.60 2.03 41.13 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.42 -21.83 9.49 67.92 0.64 -21.19 16 8 H 0.11 5.03 5.20 -2.91 -0.02 5.01 16 9 O -0.21 -10.91 9.19 -22.83 -0.21 -11.12 16 10 C 0.14 6.37 6.62 22.58 0.15 6.52 16 11 C -0.22 -8.91 9.17 22.39 0.21 -8.70 16 12 C -0.05 -1.72 9.82 22.27 0.22 -1.50 16 13 C -0.11 -4.03 6.32 22.35 0.14 -3.89 16 14 Cl -0.08 -2.35 28.95 -2.72 -0.08 -2.42 16 15 C -0.05 -1.82 9.15 22.28 0.20 -1.62 16 16 C -0.16 -6.65 5.90 -19.75 -0.12 -6.77 16 17 C 0.11 4.24 6.09 71.23 0.43 4.67 16 18 O -0.17 -6.17 9.59 -21.38 -0.20 -6.38 16 19 N -0.59 -16.78 6.39 -173.53 -1.11 -17.89 16 20 C 0.53 14.97 7.50 87.66 0.66 15.63 16 21 O -0.58 -22.13 16.30 14.37 0.23 -21.90 16 22 C -0.12 -2.08 4.15 -11.01 -0.05 -2.13 16 23 C -0.12 -2.04 7.40 31.12 0.23 -1.81 16 24 C -0.13 -1.39 8.10 31.19 0.25 -1.14 16 25 C -0.13 -1.73 7.64 31.19 0.24 -1.49 16 26 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.14 5.56 5.64 -2.91 -0.02 5.55 16 28 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.13 5.13 7.00 -2.91 -0.02 5.11 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.42 9.05 8.54 -92.71 -0.79 8.26 16 33 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.55 7.43 -2.39 -0.02 1.54 16 36 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 39 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -69.27 353.08 4.94 -64.33 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.31 Total: 27.70 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 3.68 Total: -23.49 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.81 Total: -67.85 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.18 Total: -39.40 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.42 kcal Total: -69.27 4.94 -64.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842112428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds