Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48499 * 109.47040 * 239.99541 * 3 2 1 5 5 H 1.48498 * 109.47589 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47025 * 119.99878 * 3 2 1 7 7 C 1.37881 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00018 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.89107 * 303.89064 * 9 7 2 11 11 C 1.55160 * 111.03125 * 67.79079 * 9 7 2 12 12 C 1.54343 * 103.01722 * 153.39395 * 11 9 7 13 13 N 1.47023 * 107.26726 * 338.13915 * 12 11 9 14 14 C 1.34771 * 125.64843 * 178.84596 * 13 12 11 15 15 O 1.21282 * 120.00060 * 184.81046 * 14 13 12 16 16 C 1.50699 * 119.99643 * 4.81962 * 14 13 12 17 17 H 1.08993 * 109.47570 * 310.93417 * 16 14 13 18 18 O 1.42909 * 109.46844 * 190.94184 * 16 14 13 19 19 C 1.50698 * 109.47691 * 70.94282 * 16 14 13 20 20 C 1.38240 * 119.98705 * 74.98050 * 19 16 14 21 21 C 1.38217 * 120.01248 * 179.73223 * 20 19 16 22 22 C 1.38354 * 119.98663 * 0.54521 * 21 20 19 23 23 Cl 1.73597 * 120.01331 * 179.70729 * 22 21 20 24 24 C 1.38356 * 119.97235 * 359.73017 * 22 21 20 25 25 C 1.38215 * 119.98498 * 359.97438 * 24 22 21 26 26 C 1.47427 * 108.69846 * 358.58679 * 13 12 11 27 27 H 0.97003 * 120.00151 * 0.02562 * 1 2 3 28 28 H 0.96695 * 114.00562 * 56.11033 * 10 9 7 29 29 H 1.09003 * 110.72007 * 271.95053 * 11 9 7 30 30 H 1.08999 * 110.72289 * 35.04897 * 11 9 7 31 31 H 1.08996 * 109.98624 * 218.66015 * 12 11 9 32 32 H 1.09006 * 109.77553 * 97.49994 * 12 11 9 33 33 H 0.96703 * 113.99572 * 299.99948 * 18 16 14 34 34 H 1.08005 * 119.99483 * 0.02562 * 20 19 16 35 35 H 1.08002 * 120.00657 * 180.27932 * 21 20 19 36 36 H 1.07998 * 120.00352 * 180.02562 * 24 22 21 37 37 H 1.07999 * 119.99037 * 179.97438 * 25 24 22 38 38 H 1.09000 * 110.36202 * 143.19449 * 26 13 12 39 39 H 1.09001 * 110.36554 * 265.40581 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5685 1.1080 11 6 0.4980 -2.7074 -1.3411 12 6 0.3998 -4.2439 -1.4496 13 7 1.4583 -4.8099 -0.6007 14 6 1.6919 -6.1230 -0.4072 15 8 2.5392 -6.4780 0.3846 16 6 0.9003 -7.1502 -1.1749 17 1 -0.1621 -6.9169 -1.1050 18 8 1.1405 -8.4464 -0.6232 19 6 1.3243 -7.1334 -2.6209 20 6 2.5316 -7.6941 -2.9936 21 6 2.9185 -7.6838 -4.3205 22 6 2.1022 -7.1022 -5.2742 23 17 2.5909 -7.0822 -6.9399 24 6 0.8966 -6.5361 -4.8998 25 6 0.5081 -6.5524 -3.5735 26 6 2.2257 -3.7031 -0.0011 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2775 -1.8357 1.1504 29 1 -0.4939 -2.2571 -1.3002 30 1 1.0715 -2.2988 -2.1731 31 1 0.5481 -4.5545 -2.4838 32 1 -0.5764 -4.5769 -1.0967 33 1 2.0675 -8.7205 -0.6520 34 1 3.1707 -8.1445 -2.2484 35 1 3.8597 -8.1260 -4.6121 36 1 0.2588 -6.0823 -5.6440 37 1 -0.4328 -6.1102 -3.2811 38 1 2.5196 -3.9538 1.0181 39 1 3.1055 -3.4808 -0.6050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844017667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = -113.035015 kcal Electronic energy + Delta-G solvation = -25723.148869 eV Core-core repulsion = 21849.458455 eV Total energy + Delta-G solvation = -3873.690414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53456 -39.04564 -37.69300 -36.75923 -36.00986 -34.45137 -32.20382 -31.83187 -31.31255 -29.93624 -28.48135 -26.99800 -24.90911 -23.27382 -22.55317 -21.81096 -19.91453 -19.28033 -17.98534 -17.50179 -17.16494 -16.49131 -16.08173 -15.37305 -15.15041 -15.02397 -14.76923 -14.31310 -13.96253 -13.77274 -13.71580 -13.48723 -13.16474 -12.80519 -12.47561 -12.21936 -12.06090 -11.82919 -11.71830 -11.58634 -11.40881 -11.37854 -11.06715 -10.97066 -10.84272 -10.67874 -10.54615 -10.12469 -9.57961 -9.45824 -9.29569 -8.78425 -8.70991 -8.29157 -8.10457 -6.36058 -4.44004 0.78830 1.01858 1.87294 2.79317 3.17554 3.22293 3.22904 3.27331 3.39666 4.21079 4.31612 4.38947 4.45628 4.59428 4.73158 4.92594 4.94934 5.04862 5.31015 5.36228 5.42591 5.64039 5.65441 5.74504 5.87663 5.91190 5.94312 6.12993 6.19349 6.34601 6.46633 6.54366 6.77179 6.85155 7.21807 7.24395 7.34628 7.67152 7.90645 7.97822 8.40130 8.58037 9.25192 9.41299 10.71674 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.003741 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.376071 B = 7481.948517 C = 8762.776067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.090 3.910 13 N -0.596 5.596 14 C 0.500 3.500 15 O -0.546 6.546 16 C 0.137 3.863 17 H 0.130 0.870 18 O -0.531 6.531 19 C -0.106 4.106 20 C -0.093 4.093 21 C -0.107 4.107 22 C -0.031 4.031 23 Cl -0.072 7.072 24 C -0.107 4.107 25 C -0.089 4.089 26 C 0.118 3.882 27 H 0.270 0.730 28 H 0.386 0.614 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.381 0.619 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -12.497 -11.268 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.177 4.177 12 C -0.032 4.032 13 N -0.329 5.329 14 C 0.287 3.713 15 O -0.425 6.425 16 C 0.074 3.926 17 H 0.147 0.853 18 O -0.336 6.336 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.057 4.057 23 Cl -0.043 7.043 24 C -0.126 4.126 25 C -0.107 4.107 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.238 0.762 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.062 -13.173 -10.764 17.011 hybrid contribution 0.689 1.580 -0.515 1.799 sum 0.750 -11.593 -11.279 16.192 Atomic orbital electron populations 1.69544 1.06007 1.27952 1.50235 1.24978 0.95017 0.99566 0.93313 0.86452 0.79551 0.81940 0.78927 1.20019 1.21046 1.19940 1.21437 0.93768 0.90191 1.52175 0.91684 1.19550 0.86024 0.90733 0.82744 1.86102 1.51030 1.52774 1.49533 1.23210 1.03197 0.89816 1.01513 1.22431 0.89992 0.97609 0.93200 1.48583 1.32944 1.04797 1.46528 1.20746 0.84533 0.82704 0.83360 1.90682 1.35342 1.79816 1.36641 1.20665 1.00869 0.83728 0.87307 0.85256 1.86618 1.32740 1.30446 1.83779 1.20323 0.95575 0.99468 0.95376 1.20889 0.95565 0.98865 0.95761 1.20992 0.99810 0.99773 0.91958 1.20975 0.96443 1.02664 0.85628 1.98375 1.91503 1.97363 1.17045 1.21053 0.95244 0.99555 0.96699 1.21045 0.99985 0.97910 0.91755 1.22439 0.94506 0.85236 0.98205 0.91950 0.76183 0.89746 0.91299 0.92151 0.92211 0.76911 0.84964 0.84673 0.84442 0.84281 0.90916 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.43 10.79 55.43 0.60 -21.84 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.59 8.25 -34.44 -0.28 -13.88 16 8 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 9 C 0.25 5.84 0.89 -89.62 -0.08 5.76 16 10 O -0.58 -14.63 13.18 -35.23 -0.46 -15.10 16 11 C -0.14 -2.81 5.64 -24.88 -0.14 -2.95 16 12 C 0.09 1.50 5.91 -3.05 -0.02 1.48 16 13 N -0.60 -11.17 3.33 -170.51 -0.57 -11.74 16 14 C 0.50 8.93 7.08 -10.99 -0.08 8.86 16 15 O -0.55 -11.41 16.54 -14.11 -0.23 -11.64 16 16 C 0.14 1.87 3.03 -29.04 -0.09 1.78 16 17 H 0.13 1.60 7.68 -51.93 -0.40 1.20 16 18 O -0.53 -7.21 12.94 -54.90 -0.71 -7.92 16 19 C -0.11 -1.26 4.66 -104.62 -0.49 -1.75 16 20 C -0.09 -1.02 9.24 -39.59 -0.37 -1.39 16 21 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 22 C -0.03 -0.32 6.32 -39.49 -0.25 -0.57 16 23 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 24 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 25 C -0.09 -0.94 7.46 -39.59 -0.30 -1.23 16 26 C 0.12 2.55 6.10 -2.53 -0.02 2.53 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.39 9.74 6.93 45.56 0.32 10.06 16 29 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 30 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.06 0.85 5.10 -51.93 -0.26 0.58 16 32 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.38 4.27 7.34 45.56 0.33 4.61 16 34 H 0.13 1.29 7.00 -52.48 -0.37 0.92 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 1.23 7.32 -52.49 -0.38 0.84 16 38 H 0.07 1.70 7.99 -51.93 -0.41 1.28 16 39 H 0.07 1.51 8.02 -51.93 -0.42 1.09 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -28.87 339.64 -8.98 -37.86 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -3.23 Total: 15.34 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.97 Total: -2.56 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.03 Total: -33.57 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.41 Total: -34.66 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.87 -8.98 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.178 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds