Wall clock time and date at job start Tue Mar 31 2020 13:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76202 * 102.99936 * 2 1 4 4 C 1.39190 * 119.92959 * 359.97438 * 3 2 1 5 5 C 1.37979 * 120.32660 * 180.02562 * 4 3 2 6 6 C 1.38697 * 120.18335 * 0.02562 * 5 4 3 7 7 O 1.35728 * 120.07415 * 179.97438 * 6 5 4 8 8 C 1.40151 * 119.84764 * 359.97158 * 6 5 4 9 9 C 1.47416 * 120.15678 * 180.02562 * 8 6 5 10 10 O 1.21511 * 119.99532 * 359.72790 * 9 8 6 11 11 O 1.34749 * 119.99675 * 179.97438 * 9 8 6 12 12 C 1.45208 * 116.99513 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46885 * 180.02562 * 12 11 9 14 14 O 1.21285 * 119.99743 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99716 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47288 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99475 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00266 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99715 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47193 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46916 * 120.00443 * 21 19 17 24 24 H 1.48502 * 109.47065 * 240.00086 * 21 19 17 25 25 C 1.38454 * 119.92607 * 180.25369 * 3 2 1 26 26 H 1.09004 * 109.47005 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47419 * 299.99862 * 1 2 3 29 29 H 1.08001 * 119.83365 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.90958 * 179.97438 * 5 4 3 31 31 H 0.96704 * 114.00212 * 270.01485 * 7 6 5 32 32 H 1.09003 * 109.46907 * 299.99907 * 12 11 9 33 33 H 1.08995 * 109.46854 * 60.00352 * 12 11 9 34 34 H 0.96992 * 120.00178 * 359.97438 * 15 13 12 35 35 H 1.09003 * 109.47554 * 300.00496 * 16 15 13 36 36 H 1.09003 * 109.47300 * 59.99788 * 16 15 13 37 37 H 0.96996 * 119.99695 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.09316 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1911 2.6649 -0.0005 5 6 1.4922 4.0114 -0.0011 6 6 2.8144 4.4304 -0.0016 7 8 3.1080 5.7555 -0.0027 8 6 3.8465 3.4822 -0.0010 9 6 5.2542 3.9199 -0.0010 10 8 5.5218 5.1052 -0.0065 11 8 6.2440 3.0056 0.0001 12 6 7.6061 3.5087 0.0006 13 6 8.5696 2.3499 0.0012 14 8 8.1496 1.2121 0.0016 15 7 9.8979 2.5780 0.0022 16 6 10.8345 1.4516 0.0034 17 6 12.2482 1.9736 0.0038 18 1 12.4306 3.0381 0.0037 19 6 13.3086 1.0924 0.0043 20 7 13.0863 -0.2038 0.0039 21 14 15.0609 1.7396 0.0055 22 1 15.0401 3.2245 0.0064 23 1 15.7670 1.2542 1.2183 24 1 15.7685 1.2547 -1.2066 25 6 3.5348 2.1200 -0.0053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1596 2.3448 -0.0005 30 1 0.6961 4.7413 -0.0019 31 1 3.1927 6.1389 -0.8864 32 1 7.7694 4.1161 -0.8897 33 1 7.7683 4.1170 0.8903 34 1 10.2337 3.4880 0.0022 35 1 10.6710 0.8438 0.8934 36 1 10.6725 0.8433 -0.8865 37 1 13.8323 -0.8238 0.0039 38 1 4.3249 1.3837 -0.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850291114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:30 Heat of formation + Delta-G solvation = -135.770646 kcal Electronic energy + Delta-G solvation = -23750.082737 eV Core-core repulsion = 19877.450139 eV Total energy + Delta-G solvation = -3872.632598 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91988 -39.59378 -38.55820 -37.12402 -36.17628 -34.24551 -32.42744 -32.19597 -30.51468 -29.51120 -28.99894 -26.72582 -24.53120 -23.21379 -22.57484 -21.31505 -19.94201 -18.83253 -18.48850 -17.56320 -17.22220 -16.65522 -16.13180 -16.06141 -15.91426 -15.41974 -15.06900 -14.97275 -14.58898 -14.42304 -14.24717 -14.12373 -13.32508 -13.15858 -13.07111 -12.78507 -12.73595 -12.65555 -12.28640 -11.99787 -11.76625 -11.26722 -10.98657 -10.94242 -10.69684 -10.62629 -10.48495 -10.34498 -9.96526 -9.59275 -9.42088 -9.17967 -8.78586 -7.98703 -7.73953 -6.19521 -4.26788 0.20205 0.70201 1.08370 1.98710 2.25161 2.33851 3.14688 3.19567 3.22721 3.29909 3.32975 3.76322 3.92376 4.27791 4.33984 4.42886 4.58634 4.59927 4.70375 4.89376 4.99734 5.12194 5.16717 5.18461 5.24011 5.34103 5.40248 5.51053 5.66836 5.77982 6.11196 6.27745 7.22896 7.28774 7.30909 7.46120 7.58440 7.65935 7.92130 8.50070 8.71412 8.96510 9.39624 10.90691 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002276 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.976818 B =12297.036292 C =13760.706154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.095 6.095 3 C -0.112 4.112 4 C -0.085 4.085 5 C -0.140 4.140 6 C 0.169 3.831 7 O -0.477 6.477 8 C -0.133 4.133 9 C 0.507 3.493 10 O -0.491 6.491 11 O -0.325 6.325 12 C 0.050 3.950 13 C 0.500 3.500 14 O -0.533 6.533 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.022 4.022 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.397 0.603 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.757 7.565 -1.708 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.147 5.853 3 C -0.224 4.224 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.120 3.880 7 O -0.288 6.288 8 C -0.136 4.136 9 C 0.351 3.649 10 O -0.379 6.379 11 O -0.240 6.240 12 C -0.027 4.027 13 C 0.283 3.717 14 O -0.411 6.411 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.046 4.046 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.104 0.896 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.256 0.744 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.193 5.748 -1.109 27.816 hybrid contribution 0.441 2.025 -0.458 2.122 sum -26.752 7.773 -1.568 27.902 Atomic orbital electron populations 1.23740 0.95166 1.07449 1.05610 1.85938 1.05751 1.01292 1.92294 1.21710 0.96148 0.97743 1.06845 1.21278 0.98710 0.92406 0.98476 1.21258 0.95561 0.96035 1.03144 1.18413 0.90422 0.83593 0.95554 1.84782 1.92398 1.17987 1.33653 1.19466 0.89975 0.93919 1.10250 1.20858 0.86154 0.84223 0.73652 1.90868 1.84481 1.17557 1.45021 1.86606 1.15290 1.38502 1.83649 1.22890 0.78454 0.96650 1.04704 1.19870 0.83609 0.89471 0.78795 1.90712 1.77892 1.22933 1.49538 1.46358 1.04644 1.12213 1.72435 1.19185 0.85877 0.83823 0.98056 1.21245 0.90149 0.93505 1.53374 0.91706 1.24958 0.99724 0.94725 0.94630 1.69982 1.32038 1.01377 1.48775 0.86335 0.83642 0.79009 0.77773 1.19604 1.20769 1.20769 1.21180 0.95441 0.94744 0.93223 0.89655 0.87108 0.89642 0.84781 0.83980 0.74412 0.88400 0.88360 0.77407 0.95227 0.95230 0.92423 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.14 101.05 0.92 0.23 16 2 S -0.10 -0.85 22.55 -107.50 -2.42 -3.27 16 3 C -0.11 -1.09 6.10 -39.15 -0.24 -1.33 16 4 C -0.08 -0.64 9.35 -39.32 -0.37 -1.00 16 5 C -0.14 -1.08 9.97 -39.51 -0.39 -1.48 16 6 C 0.17 1.74 6.72 -38.69 -0.26 1.48 16 7 O -0.48 -4.84 11.56 -40.83 -0.47 -5.31 16 8 C -0.13 -1.64 5.88 -104.88 -0.62 -2.26 16 9 C 0.51 7.45 7.89 34.47 0.27 7.72 16 10 O -0.49 -7.68 14.94 -26.61 -0.40 -8.08 16 11 O -0.33 -5.30 9.00 -47.31 -0.43 -5.73 16 12 C 0.05 0.78 5.95 36.01 0.21 1.00 16 13 C 0.50 10.06 7.91 -10.98 -0.09 9.97 16 14 O -0.53 -13.04 16.50 -14.11 -0.23 -13.27 16 15 N -0.71 -14.65 5.55 -61.47 -0.34 -14.99 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 17 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.88 13.29 55.43 0.74 -25.15 16 21 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.02 -0.26 9.35 -38.94 -0.36 -0.63 16 26 H 0.08 0.30 7.74 -51.92 -0.40 -0.10 16 27 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.08 0.32 7.74 -51.92 -0.40 -0.09 16 29 H 0.13 0.63 5.84 -52.49 -0.31 0.32 16 30 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.40 2.38 9.06 45.56 0.41 2.79 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.15 1.99 7.61 -52.49 -0.40 1.59 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -35.20 353.65 -8.12 -43.32 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.51 Total: 4.47 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.36 Total: 6.97 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.40 Total: -40.13 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.53 Total: -32.39 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.42 Total: -3.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.20 -8.12 -43.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850291114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.453 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds