Wall clock time and date at job start Tue Mar 31 2020 13:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76202 * 102.99936 * 2 1 4 4 C 1.39190 * 119.92959 * 359.97438 * 3 2 1 5 5 C 1.37979 * 120.32660 * 180.02562 * 4 3 2 6 6 C 1.38697 * 120.18335 * 0.02562 * 5 4 3 7 7 O 1.35728 * 120.07415 * 179.97438 * 6 5 4 8 8 C 1.40151 * 119.84764 * 359.97158 * 6 5 4 9 9 C 1.47416 * 120.15678 * 180.02562 * 8 6 5 10 10 O 1.21511 * 119.99532 * 359.72790 * 9 8 6 11 11 O 1.34749 * 119.99675 * 179.97438 * 9 8 6 12 12 C 1.45208 * 116.99513 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46885 * 180.02562 * 12 11 9 14 14 O 1.21285 * 119.99743 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99716 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47288 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99475 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00266 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99715 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47193 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46916 * 120.00443 * 21 19 17 24 24 H 1.48502 * 109.47065 * 240.00086 * 21 19 17 25 25 C 1.38454 * 119.92607 * 180.25369 * 3 2 1 26 26 H 1.09004 * 109.47005 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47419 * 299.99862 * 1 2 3 29 29 H 1.08001 * 119.83365 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.90958 * 179.97438 * 5 4 3 31 31 H 0.96704 * 114.00212 * 270.01485 * 7 6 5 32 32 H 1.09003 * 109.46907 * 299.99907 * 12 11 9 33 33 H 1.08995 * 109.46854 * 60.00352 * 12 11 9 34 34 H 0.96992 * 120.00178 * 359.97438 * 15 13 12 35 35 H 1.09003 * 109.47554 * 300.00496 * 16 15 13 36 36 H 1.09003 * 109.47300 * 59.99788 * 16 15 13 37 37 H 0.96996 * 119.99695 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.09316 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1911 2.6649 -0.0005 5 6 1.4922 4.0114 -0.0011 6 6 2.8144 4.4304 -0.0016 7 8 3.1080 5.7555 -0.0027 8 6 3.8465 3.4822 -0.0010 9 6 5.2542 3.9199 -0.0010 10 8 5.5218 5.1052 -0.0065 11 8 6.2440 3.0056 0.0001 12 6 7.6061 3.5087 0.0006 13 6 8.5696 2.3499 0.0012 14 8 8.1496 1.2121 0.0016 15 7 9.8979 2.5780 0.0022 16 6 10.8345 1.4516 0.0034 17 6 12.2482 1.9736 0.0038 18 1 12.4306 3.0381 0.0037 19 6 13.3086 1.0924 0.0043 20 7 13.0863 -0.2038 0.0039 21 14 15.0609 1.7396 0.0055 22 1 15.0401 3.2245 0.0064 23 1 15.7670 1.2542 1.2183 24 1 15.7685 1.2547 -1.2066 25 6 3.5348 2.1200 -0.0053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1596 2.3448 -0.0005 30 1 0.6961 4.7413 -0.0019 31 1 3.1927 6.1389 -0.8864 32 1 7.7694 4.1161 -0.8897 33 1 7.7683 4.1170 0.8903 34 1 10.2337 3.4880 0.0022 35 1 10.6710 0.8438 0.8934 36 1 10.6725 0.8433 -0.8865 37 1 13.8323 -0.8238 0.0039 38 1 4.3249 1.3837 -0.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850291114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:29 Heat of formation + Delta-G solvation = -160.507304 kcal Electronic energy + Delta-G solvation = -23751.155399 eV Core-core repulsion = 19877.450139 eV Total energy + Delta-G solvation = -3873.705260 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97112 -40.75475 -40.01529 -37.92493 -37.34300 -36.20227 -34.43534 -33.00792 -31.21652 -30.79665 -29.75404 -28.51741 -25.54232 -24.53405 -23.90248 -22.33971 -21.67686 -19.78461 -19.33487 -19.05803 -18.44466 -17.87319 -17.64739 -17.15014 -16.78083 -16.76244 -16.62256 -16.17195 -15.95963 -15.52354 -15.13528 -14.69968 -14.65462 -14.50185 -14.12597 -13.86599 -13.79002 -13.65657 -13.47576 -13.43336 -13.09462 -12.92291 -12.76349 -12.23251 -12.15018 -11.95462 -11.48483 -11.45629 -11.20681 -10.93776 -10.84178 -10.68225 -10.33822 -9.95394 -8.43840 -8.30599 -6.47231 -0.60734 -0.03351 0.46895 1.15015 1.28649 1.44055 1.44573 1.46606 1.52328 1.58401 2.31812 2.36994 2.52725 3.04711 3.06466 3.42388 3.63936 3.72038 3.94370 4.01833 4.02358 4.11745 4.28365 4.31702 4.34377 4.67399 4.77766 4.88890 4.96178 4.98310 5.07313 5.17492 5.20237 5.40207 5.44550 5.61535 5.80860 6.47914 6.61808 6.70615 6.75746 7.18906 7.33655 8.81863 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002276 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.976818 B =12297.036292 C =13760.706154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.156 6.156 3 C -0.113 4.113 4 C -0.069 4.069 5 C -0.126 4.126 6 C 0.167 3.833 7 O -0.489 6.489 8 C -0.157 4.157 9 C 0.508 3.492 10 O -0.504 6.504 11 O -0.346 6.346 12 C 0.061 3.939 13 C 0.500 3.500 14 O -0.583 6.583 15 N -0.698 5.698 16 C 0.266 3.734 17 C -0.556 4.556 18 H 0.087 0.913 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.041 4.041 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.413 0.587 35 H -0.008 1.008 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.693 10.137 -1.806 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.086 5.914 3 C -0.225 4.225 4 C -0.092 4.092 5 C -0.146 4.146 6 C 0.119 3.881 7 O -0.303 6.303 8 C -0.161 4.161 9 C 0.354 3.646 10 O -0.394 6.394 11 O -0.262 6.262 12 C -0.015 4.015 13 C 0.285 3.715 14 O -0.463 6.463 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.176 1.176 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.065 4.065 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.120 0.880 29 H 0.189 0.811 30 H 0.195 0.805 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.249 0.751 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -29.147 8.381 -1.219 30.352 hybrid contribution 0.868 1.181 -0.434 1.529 sum -28.278 9.563 -1.653 29.897 Atomic orbital electron populations 1.23861 0.90428 1.08884 1.07220 1.86193 1.11031 1.01805 1.92366 1.21763 0.95781 0.98288 1.06686 1.21711 0.99762 0.91805 0.95939 1.21609 0.95060 0.96783 1.01163 1.18595 0.90907 0.83315 0.95301 1.84733 1.92506 1.17809 1.35267 1.19504 0.89076 0.94657 1.12849 1.21272 0.86577 0.83839 0.72950 1.90839 1.84704 1.17748 1.46091 1.86611 1.15759 1.39763 1.84100 1.22774 0.77401 0.94059 1.07284 1.20657 0.83779 0.90198 0.76829 1.90690 1.78677 1.25530 1.51447 1.46029 1.04543 1.11858 1.72488 1.18644 0.87547 0.84838 0.94599 1.21636 0.90131 0.94639 1.52950 0.89547 1.26072 1.04929 0.94798 0.93842 1.70141 1.33728 1.03121 1.49892 0.85088 0.77101 0.79223 0.77658 1.17608 1.20507 1.20448 1.21004 0.96114 0.94231 0.95120 0.87863 0.85818 0.88034 0.81112 0.80459 0.72526 0.85472 0.85819 0.75067 0.99006 0.98933 0.92188 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.14 113.37 1.04 0.19 16 2 S -0.16 -2.76 22.55 -56.49 -1.27 -4.03 16 3 C -0.11 -2.12 6.10 22.55 0.14 -1.98 16 4 C -0.07 -0.81 9.35 22.44 0.21 -0.60 16 5 C -0.13 -1.53 9.97 22.32 0.22 -1.30 16 6 C 0.17 3.19 6.72 22.84 0.15 3.34 16 7 O -0.49 -9.04 11.56 -69.54 -0.80 -9.84 16 8 C -0.16 -3.93 5.88 -20.03 -0.12 -4.05 16 9 C 0.51 15.12 7.89 70.24 0.55 15.67 16 10 O -0.50 -15.49 14.94 26.82 0.40 -15.09 16 11 O -0.35 -11.67 9.00 -50.21 -0.45 -12.12 16 12 C 0.06 1.88 5.95 71.24 0.42 2.31 16 13 C 0.50 20.76 7.91 87.66 0.69 21.45 16 14 O -0.58 -30.25 16.50 15.75 0.26 -29.99 16 15 N -0.70 -29.50 5.55 -466.78 -2.59 -32.09 16 16 C 0.27 14.60 5.43 85.63 0.46 15.06 16 17 C -0.56 -30.06 9.28 25.60 0.24 -29.82 16 18 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 21 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 22 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.04 -1.01 9.35 22.69 0.21 -0.80 16 26 H 0.10 0.32 7.74 -2.39 -0.02 0.30 16 27 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.35 7.74 -2.39 -0.02 0.33 16 29 H 0.17 0.75 5.84 -2.91 -0.02 0.73 16 30 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.41 4.22 9.06 -74.05 -0.67 3.55 16 32 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.41 14.05 8.32 -92.71 -0.77 13.27 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.13 3.75 7.61 -2.91 -0.02 3.73 16 Total: -1.00 -81.04 353.65 2.23 -78.81 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.31 Total: 15.76 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 4.69 Total: 20.10 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.30 Total: -87.91 kcal Atomic # 8 Polarization: -66.45 SS G_CDS: -0.60 Total: -67.04 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -1.27 Total: -4.03 kcal Total: -81.04 2.23 -78.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850291114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.698 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds