Wall clock time and date at job start Tue Mar 31 2020 14:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48499 * 109.47191 * 240.00135 * 3 2 1 5 5 H 1.48508 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47487 * 119.99274 * 3 2 1 7 7 C 1.38804 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99857 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00072 * 174.92233 * 9 7 2 11 11 C 1.39112 * 120.19057 * 7.87605 * 10 9 7 12 12 C 1.37914 * 120.05113 * 179.97438 * 11 10 9 13 13 C 1.38651 * 120.43881 * 0.02562 * 12 11 10 14 14 C 1.37810 * 120.38161 * 359.67569 * 13 12 11 15 15 C 1.39677 * 119.93803 * 0.59679 * 14 13 12 16 16 C 1.47430 * 120.21669 * 179.69996 * 15 14 13 17 17 O 1.21610 * 119.99650 * 127.67352 * 16 15 14 18 18 N 1.34777 * 119.99871 * 307.67201 * 16 15 14 19 19 C 1.46924 * 120.62605 * 174.30968 * 18 16 15 20 20 C 1.53196 * 108.77611 * 126.41560 * 19 18 16 21 21 C 1.53042 * 109.31060 * 54.62992 * 20 19 18 22 22 H 1.08994 * 109.44890 * 58.65234 * 21 20 19 23 23 O 1.42909 * 109.45739 * 178.61672 * 21 20 19 24 24 C 1.53036 * 109.53863 * 298.63737 * 21 20 19 25 25 H 1.09007 * 109.49640 * 181.32163 * 24 21 20 26 26 F 1.39897 * 109.49847 * 301.41185 * 24 21 20 27 27 C 1.46923 * 120.63205 * 354.33119 * 18 16 15 28 28 H 0.97002 * 119.99517 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.97424 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.77728 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.81067 * 179.97438 * 13 12 11 32 32 H 1.08004 * 120.03622 * 180.32645 * 14 13 12 33 33 H 1.09000 * 109.58742 * 246.20023 * 19 18 16 34 34 H 1.09000 * 109.58907 * 6.62530 * 19 18 16 35 35 H 1.08995 * 109.49900 * 174.58319 * 20 19 18 36 36 H 1.09004 * 109.49487 * 294.68201 * 20 19 18 37 37 H 0.96695 * 113.99848 * 300.07262 * 23 21 20 38 38 H 1.09003 * 109.58605 * 353.37548 * 27 18 16 39 39 H 1.09001 * 109.58587 * 113.80107 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0095 -1.2021 0.0005 8 1 3.0895 -1.2022 0.0010 9 16 1.1284 -2.7280 0.0005 10 6 2.4723 -3.8573 -0.1523 11 6 3.7834 -3.4001 -0.0670 12 6 4.8331 -4.2866 -0.1865 13 6 4.5925 -5.6365 -0.3924 14 6 3.3008 -6.1098 -0.4736 15 6 2.2258 -5.2251 -0.3605 16 6 0.8416 -5.7239 -0.4530 17 8 0.0375 -5.4509 0.4175 18 7 0.4673 -6.4823 -1.5024 19 6 -0.8698 -7.0896 -1.5479 20 6 -1.5454 -6.6963 -2.8655 21 6 -0.6382 -7.0851 -4.0351 22 1 -0.4479 -8.1579 -4.0057 23 8 -1.2795 -6.7490 -5.2672 24 6 0.6879 -6.3289 -3.9276 25 1 1.3244 -6.5885 -4.7737 26 9 0.4419 -4.9518 -3.9331 27 6 1.3887 -6.7180 -2.6222 28 1 -0.4849 0.8401 -0.0004 29 1 3.9794 -2.3502 0.0928 30 1 5.8492 -3.9268 -0.1200 31 1 5.4222 -6.3217 -0.4850 32 1 3.1198 -7.1632 -0.6288 33 1 -0.7806 -8.1745 -1.4927 34 1 -1.4647 -6.7267 -0.7097 35 1 -2.4984 -7.2175 -2.9554 36 1 -1.7160 -5.6198 -2.8796 37 1 -2.1278 -7.1928 -5.4029 38 1 2.2841 -6.1100 -2.4928 39 1 1.6622 -7.7727 -2.6546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890708464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:38 Heat of formation + Delta-G solvation = -100.577841 kcal Electronic energy + Delta-G solvation = -25842.273920 eV Core-core repulsion = 21983.540186 eV Total energy + Delta-G solvation = -3858.733734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.43197 -40.01031 -38.16042 -37.34498 -35.67314 -32.77311 -32.06906 -30.77941 -30.40071 -30.09318 -25.88122 -25.25642 -23.79532 -22.65948 -22.02649 -20.82750 -19.35022 -18.02651 -17.66582 -17.16403 -16.29906 -15.99774 -15.82525 -15.52597 -15.40368 -15.10059 -14.56252 -14.45535 -13.86214 -13.75894 -13.66541 -13.19393 -13.06075 -12.93458 -12.63001 -12.35030 -12.13448 -11.79718 -11.74369 -11.61802 -11.23363 -11.18395 -11.14739 -11.02933 -10.48758 -10.34132 -10.14831 -9.82145 -9.60381 -9.47071 -8.76096 -8.60794 -8.43743 -8.32370 -6.57105 -6.48253 -4.19591 1.61909 1.96399 3.00051 3.08588 3.14613 3.18490 3.25518 3.37553 3.78501 4.03053 4.29706 4.34109 4.45552 4.56588 4.77617 4.85844 4.94076 4.98560 5.10775 5.13521 5.30312 5.36727 5.37719 5.50609 5.55390 5.56441 5.75172 5.80476 5.96444 6.09568 6.16870 6.32689 6.52175 6.64128 6.83541 6.97332 7.09710 7.35154 7.41857 7.55193 7.56958 8.14498 8.55783 8.98257 10.57518 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.004760 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.126449 B = 5880.925219 C = 6871.716193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.081 3.919 3 Si 0.924 3.076 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.570 4.570 8 H 0.094 0.906 9 S 0.112 5.888 10 C -0.047 4.047 11 C -0.150 4.150 12 C -0.079 4.079 13 C -0.180 4.180 14 C -0.070 4.070 15 C -0.165 4.165 16 C 0.577 3.423 17 O -0.514 6.514 18 N -0.614 5.614 19 C 0.115 3.885 20 C -0.170 4.170 21 C 0.081 3.919 22 H 0.071 0.929 23 O -0.559 6.559 24 C 0.087 3.913 25 H 0.096 0.904 26 F -0.190 7.190 27 C 0.083 3.917 28 H 0.275 0.725 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.380 0.620 38 H 0.113 0.887 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -16.808 -7.603 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.130 4.130 3 Si 0.749 3.251 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.717 4.717 8 H 0.111 0.889 9 S 0.373 5.627 10 C -0.166 4.166 11 C -0.176 4.176 12 C -0.101 4.101 13 C -0.204 4.204 14 C -0.090 4.090 15 C -0.179 4.179 16 C 0.367 3.633 17 O -0.389 6.389 18 N -0.349 5.349 19 C -0.007 4.007 20 C -0.208 4.208 21 C 0.022 3.978 22 H 0.089 0.911 23 O -0.365 6.365 24 C 0.049 3.951 25 H 0.114 0.886 26 F -0.171 7.171 27 C -0.041 4.041 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.227 0.773 38 H 0.132 0.868 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.740 -16.015 -7.045 17.511 hybrid contribution 1.396 0.857 -0.138 1.644 sum 2.136 -15.157 -7.182 16.908 Atomic orbital electron populations 1.69970 1.06239 1.28557 1.44380 1.25116 0.95072 0.99702 0.93135 0.86126 0.79379 0.80338 0.79288 1.19427 1.20520 1.19421 1.23542 0.96323 0.91949 1.59908 0.88868 1.84108 1.04170 0.95489 1.78904 1.22890 1.00391 0.96660 0.96644 1.21423 0.91293 1.00952 1.03905 1.21082 0.98259 0.93383 0.97359 1.20647 0.95804 0.95585 1.08413 1.20860 0.92116 0.97689 0.98330 1.19085 0.91995 0.93472 1.13356 1.18342 0.87860 0.76274 0.80847 1.90790 1.53181 1.55462 1.39478 1.47907 1.14740 1.52094 1.20138 1.21492 0.83815 0.96949 0.98492 1.22641 0.98850 1.04686 0.94669 1.22365 0.92921 0.98026 0.84504 0.91102 1.86570 1.39021 1.72695 1.38179 1.21943 0.95963 0.77866 0.99286 0.88621 1.92919 1.95466 1.31040 1.97680 1.22437 0.94400 1.02655 0.84585 0.91455 0.84323 0.86889 0.86885 0.86829 0.91554 0.88130 0.90163 0.89422 0.77280 0.86849 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 13.22 55.49 0.73 -24.31 16 2 C 0.08 2.23 5.49 -17.46 -0.10 2.14 16 3 Si 0.92 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.57 -15.84 9.08 30.94 0.28 -15.56 16 8 H 0.09 2.43 4.85 -52.48 -0.25 2.18 16 9 S 0.11 3.03 19.83 -107.50 -2.13 0.90 16 10 C -0.05 -1.08 6.14 -38.39 -0.24 -1.32 16 11 C -0.15 -3.12 9.25 -39.38 -0.36 -3.49 16 12 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 13 C -0.18 -2.69 10.02 -39.59 -0.40 -3.09 16 14 C -0.07 -1.10 7.70 -39.20 -0.30 -1.40 16 15 C -0.16 -3.27 4.69 -104.75 -0.49 -3.76 16 16 C 0.58 11.44 6.59 -12.52 -0.08 11.36 16 17 O -0.51 -12.03 15.33 5.27 0.08 -11.95 16 18 N -0.61 -9.31 2.95 -174.04 -0.51 -9.82 16 19 C 0.12 1.43 6.44 -3.71 -0.02 1.41 16 20 C -0.17 -1.92 5.59 -26.61 -0.15 -2.07 16 21 C 0.08 0.83 3.24 -26.69 -0.09 0.75 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 O -0.56 -6.01 13.28 -35.23 -0.47 -6.48 16 24 C 0.09 1.08 3.84 -26.62 -0.10 0.98 16 25 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 26 F -0.19 -3.45 16.43 2.25 0.04 -3.41 16 27 C 0.08 1.00 5.22 -3.71 -0.02 0.98 16 28 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.14 3.00 4.98 -52.49 -0.26 2.74 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.11 1.42 7.64 -52.48 -0.40 1.02 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.46 7.00 -51.93 -0.36 1.10 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.33 7.74 -51.93 -0.40 0.93 16 37 H 0.38 2.26 9.08 45.56 0.41 2.67 16 38 H 0.11 1.53 5.31 -51.93 -0.28 1.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -35.16 336.95 -8.31 -43.47 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.64 Total: 5.50 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.46 Total: -14.79 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.22 Total: -34.13 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.39 Total: -18.42 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.13 Total: 0.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.16 -8.31 -43.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890708464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.106 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds