Wall clock time and date at job start Tue Mar 31 2020 13:53:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 C 1.81402 * 107.16844 * 2 1
4 4 O 1.42103 * 113.54143 * 233.79789 * 2 1 3
5 5 N 1.49357 * 107.52239 * 115.33809 * 2 1 3
6 6 C 1.32419 * 120.00008 * 64.89121 * 5 2 1
7 7 O 1.21549 * 120.00014 * 0.02562 * 6 5 2
8 8 C 1.50700 * 120.00236 * 180.02562 * 6 5 2
9 9 O 1.45202 * 109.47251 * 180.02562 * 8 6 5
10 10 C 1.34699 * 117.00020 * 180.02562 * 9 8 6
11 11 O 1.21465 * 119.99960 * 359.97438 * 10 9 8
12 12 C 1.47770 * 119.99865 * 180.02562 * 10 9 8
13 13 C 1.39960 * 120.03211 * 359.96817 * 12 10 9
14 14 C 1.38318 * 120.35645 * 180.02562 * 13 12 10
15 15 C 1.37762 * 120.41491 * 0.02562 * 14 13 12
16 16 C 1.40756 * 120.05325 * 359.97438 * 15 14 13
17 17 C 1.41434 * 120.18010 * 179.97438 * 16 15 14
18 18 H 1.08002 * 119.99456 * 24.42865 * 17 16 15
19 19 C 1.39932 * 120.00288 * 204.42927 * 17 16 15
20 20 N 1.30824 * 120.00201 * 17.83811 * 19 17 16
21 21 Si 1.86806 * 119.99927 * 197.83727 * 19 17 16
22 22 H 1.48493 * 109.47184 * 60.00061 * 21 19 17
23 23 H 1.48506 * 109.46886 * 180.02562 * 21 19 17
24 24 H 1.48499 * 109.47168 * 299.99757 * 21 19 17
25 25 C 1.39055 * 120.02826 * 179.97438 * 12 10 9
26 26 H 1.09005 * 109.47480 * 306.20368 * 1 2 3
27 27 H 1.09003 * 109.46812 * 66.19883 * 1 2 3
28 28 H 1.08994 * 109.47543 * 186.20133 * 1 2 3
29 29 H 1.09008 * 109.46990 * 175.33798 * 3 2 1
30 30 H 1.09001 * 109.47224 * 295.33790 * 3 2 1
31 31 H 1.08992 * 109.47235 * 55.33993 * 3 2 1
32 32 H 1.09004 * 109.46727 * 60.00262 * 8 6 5
33 33 H 1.08996 * 109.47263 * 300.00445 * 8 6 5
34 34 H 1.07996 * 119.82478 * 0.02562 * 13 12 10
35 35 H 1.07999 * 119.79298 * 180.02562 * 14 13 12
36 36 H 1.08002 * 119.97692 * 179.97438 * 15 14 13
37 37 H 0.96997 * 120.00007 * 179.97438 * 20 19 17
38 38 H 1.07997 * 120.20489 * 359.69379 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.3494 1.7332 0.0000
4 8 2.3815 -0.7695 -1.0512
5 7 2.2636 -0.6095 1.2873
6 6 1.9989 -1.8809 1.5459
7 8 1.3904 -2.5521 0.7355
8 6 2.4521 -2.4958 2.8450
9 8 2.0445 -3.8888 2.8893
10 6 2.3743 -4.5876 3.9926
11 8 2.9861 -4.0483 4.8928
12 6 1.9929 -6.0106 4.1073
13 6 1.2883 -6.6327 3.0703
14 6 0.9274 -7.9642 3.1709
15 6 1.2565 -8.6932 4.2925
16 6 1.9649 -8.0850 5.3458
17 6 2.3037 -8.8307 6.4988
18 1 2.3901 -9.9057 6.4404
19 6 2.5269 -8.1759 7.7151
20 7 2.0957 -6.9530 7.8884
21 14 3.4406 -9.0479 9.0915
22 1 4.8022 -9.4152 8.6267
23 1 3.5446 -8.1452 10.2661
24 1 2.7006 -10.2766 9.4761
25 6 2.3335 -6.7328 5.2458
26 1 -0.3634 0.6070 0.8293
27 1 -0.3633 0.4147 -0.9403
28 1 -0.3634 -1.0216 0.1110
29 1 3.4354 1.7780 0.0835
30 1 2.0365 2.2102 -0.9288
31 1 1.8983 2.2528 0.8452
32 1 2.0005 -1.9580 3.6786
33 1 3.5378 -2.4329 2.9175
34 1 1.0250 -6.0702 2.1868
35 1 0.3842 -8.4353 2.3650
36 1 0.9708 -9.7323 4.3637
37 1 2.2501 -6.4992 8.7317
38 1 2.8813 -6.2583 6.0465
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000893147924.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:53:38
Heat of formation + Delta-G solvation = -86.203709 kcal
Electronic energy + Delta-G solvation = -24305.703446 eV
Core-core repulsion = 20435.220232 eV
Total energy + Delta-G solvation = -3870.483215 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 1.65 seconds
Orbital eigenvalues (eV)
-40.07021 -39.20998 -37.26576 -36.75017 -35.56143 -33.68686 -33.50046 -30.65720
-30.42035 -29.72118 -29.44399 -28.47997 -25.29259 -23.25214 -21.49954 -20.89580
-19.71579 -18.48282 -17.84481 -17.08508 -16.83334 -16.63168 -16.08975 -15.88253
-15.82208 -15.05029 -14.66464 -14.51914 -14.25390 -14.18352 -13.91727 -13.78771
-13.48617 -13.30687 -13.04762 -12.59809 -12.47748 -12.43311 -11.96409 -11.61723
-11.59780 -11.13316 -11.05717 -10.69952 -10.48089 -10.30977 -10.21347 -10.13384
-9.93925 -9.91120 -9.64901 -9.40938 -9.17805 -7.67025 -7.48292 -6.76995
-4.37400 -1.16076 1.83301 2.05457 2.32675 2.64094 2.85110 3.09995
3.11895 3.20343 3.39318 3.53234 3.67063 3.94605 3.94880 4.10105
4.28648 4.41449 4.64350 4.78453 4.89665 5.27564 5.44245 5.49078
5.61658 5.77885 6.21192 6.26463 6.53886 6.69171 6.99265 7.01304
7.05829 7.23387 7.38498 7.76721 7.83240 7.94080 7.97715 8.17050
8.50212 8.62386 8.83202 8.85497 10.18527
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.027628 B = 0.002470 C = 0.002324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1013.223159 B =11331.491426 C =12047.340420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.626 4.626
2 S 2.299 3.701
3 C -0.534 4.534
4 O -0.921 6.921
5 N -1.128 6.128
6 C 0.555 3.445
7 O -0.549 6.549
8 C 0.075 3.925
9 O -0.339 6.339
10 C 0.513 3.487
11 O -0.518 6.518
12 C -0.114 4.114
13 C -0.189 4.189
14 C -0.105 4.105
15 C -0.200 4.200
16 C 0.094 3.906
17 C -0.461 4.461
18 H 0.082 0.918
19 C 0.073 3.927
20 N -0.788 5.788
21 Si 0.911 3.089
22 H -0.263 1.263
23 H -0.278 1.278
24 H -0.265 1.265
25 C -0.089 4.089
26 H 0.133 0.867
27 H 0.126 0.874
28 H 0.146 0.854
29 H 0.150 0.850
30 H 0.139 0.861
31 H 0.147 0.853
32 H 0.102 0.898
33 H 0.100 0.900
34 H 0.107 0.893
35 H 0.097 0.903
36 H 0.098 0.902
37 H 0.285 0.715
38 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.345 20.812 -12.304 24.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.781 4.781
2 S 2.496 3.504
3 C -0.692 4.692
4 O -0.906 6.906
5 N -1.039 6.039
6 C 0.341 3.659
7 O -0.427 6.427
8 C -0.005 4.005
9 O -0.256 6.256
10 C 0.360 3.640
11 O -0.408 6.408
12 C -0.115 4.115
13 C -0.209 4.209
14 C -0.123 4.123
15 C -0.220 4.220
16 C 0.092 3.908
17 C -0.490 4.490
18 H 0.100 0.900
19 C -0.145 4.145
20 N -0.413 5.413
21 Si 0.736 3.264
22 H -0.187 1.187
23 H -0.203 1.203
24 H -0.190 1.190
25 C -0.108 4.108
26 H 0.151 0.849
27 H 0.144 0.856
28 H 0.164 0.836
29 H 0.168 0.832
30 H 0.158 0.842
31 H 0.165 0.835
32 H 0.120 0.880
33 H 0.118 0.882
34 H 0.125 0.875
35 H 0.115 0.885
36 H 0.116 0.884
37 H 0.096 0.904
38 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -1.847 20.586 -12.533 24.172
hybrid contribution -0.216 0.036 0.683 0.717
sum -2.063 20.622 -11.851 23.874
Atomic orbital electron populations
1.30087 1.23353 1.13608 1.11066 1.12588 0.80275 0.81350 0.76159
1.28985 1.14147 1.13630 1.12442 1.93584 1.73280 1.62757 1.61026
1.70329 1.60000 1.27396 1.46177 1.19305 0.76998 0.81725 0.87914
1.90898 1.40635 1.64077 1.47117 1.22210 1.02003 0.80782 0.95543
1.86651 1.73601 1.22682 1.42645 1.21939 0.75511 0.88135 0.78387
1.90757 1.39041 1.71160 1.39803 1.18809 1.06497 0.87906 0.98314
1.20661 1.06172 0.95347 0.98700 1.20522 1.00466 0.94022 0.97313
1.21190 1.04845 0.99372 0.96599 1.17531 0.89382 0.91419 0.92476
1.19513 1.41859 0.95142 0.92526 0.90029 1.25954 0.93566 0.94819
1.00198 1.69775 1.33328 1.12102 1.26069 0.86315 0.80867 0.79889
0.79366 1.18736 1.20278 1.18994 1.21645 0.99407 0.94759 0.94992
0.84855 0.85575 0.83572 0.83170 0.84240 0.83499 0.88018 0.88199
0.87511 0.88508 0.88365 0.90426 0.84636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 40.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.63 -2.94 10.55 101.05 1.07 -1.88 16
2 S 2.30 16.22 4.53 -107.50 -0.49 15.74 16
3 C -0.53 -0.08 10.89 101.05 1.10 1.02 16
4 O -0.92 -12.25 17.28 -51.80 -0.90 -13.15 16
5 N -1.13 -13.07 10.20 30.51 0.31 -12.76 16
6 C 0.55 9.21 7.45 -12.03 -0.09 9.12 16
7 O -0.55 -10.74 14.51 -22.88 -0.33 -11.07 16
8 C 0.07 1.32 6.03 36.01 0.22 1.53 16
9 O -0.34 -7.39 8.99 -47.16 -0.42 -7.81 16
10 C 0.51 12.37 7.90 34.63 0.27 12.64 16
11 O -0.52 -13.06 16.12 -19.24 -0.31 -13.37 16
12 C -0.11 -2.92 5.87 -105.05 -0.62 -3.53 16
13 C -0.19 -4.52 9.62 -38.91 -0.37 -4.90 16
14 C -0.10 -2.41 10.01 -39.73 -0.40 -2.81 16
15 C -0.20 -4.92 9.78 -38.80 -0.38 -5.30 16
16 C 0.09 2.55 5.57 -106.87 -0.60 1.96 16
17 C -0.46 -12.26 9.05 -37.73 -0.34 -12.61 16
18 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16
19 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16
20 N -0.79 -21.01 10.96 55.55 0.61 -20.40 16
21 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16
22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16
23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16
24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16
25 C -0.09 -2.43 8.23 -38.42 -0.32 -2.75 16
26 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16
27 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16
28 H 0.15 1.23 7.07 -51.93 -0.37 0.86 16
29 H 0.15 0.03 8.14 -51.92 -0.42 -0.39 16
30 H 0.14 -0.39 8.14 -51.92 -0.42 -0.81 16
31 H 0.15 -0.33 8.14 -51.93 -0.42 -0.75 16
32 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16
33 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16
34 H 0.11 2.42 7.59 -52.49 -0.40 2.02 16
35 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16
36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16
37 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16
38 H 0.14 3.93 5.75 -52.49 -0.30 3.63 16
LS Contribution 349.30 15.07 5.26 5.26
Total: -1.00 -40.27 349.30 -6.26 -46.53
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -4.42 Total: 2.81 kcal
Atomic # 6 Polarization: -5.17 SS G_CDS: -0.54 Total: -5.71 kcal
Atomic # 7 Polarization: -34.08 SS G_CDS: 0.92 Total: -33.16 kcal
Atomic # 8 Polarization: -43.44 SS G_CDS: -1.96 Total: -45.40 kcal
Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal
Atomic # 16 Polarization: 16.22 SS G_CDS: -0.49 Total: 15.74 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -40.27 -6.26 -46.53 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893147924.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.671 kcal
(2) G-P(sol) polarization free energy of solvation -40.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.65 seconds