Wall clock time and date at job start Tue Mar 31 2020 13:53:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 C 1.81402 * 107.16844 * 2 1
4 4 O 1.42103 * 113.54143 * 233.79789 * 2 1 3
5 5 N 1.49357 * 107.52239 * 115.33809 * 2 1 3
6 6 C 1.32419 * 120.00008 * 64.89121 * 5 2 1
7 7 O 1.21549 * 120.00014 * 0.02562 * 6 5 2
8 8 C 1.50700 * 120.00236 * 180.02562 * 6 5 2
9 9 O 1.45202 * 109.47251 * 180.02562 * 8 6 5
10 10 C 1.34699 * 117.00020 * 180.02562 * 9 8 6
11 11 O 1.21465 * 119.99960 * 359.97438 * 10 9 8
12 12 C 1.47770 * 119.99865 * 180.02562 * 10 9 8
13 13 C 1.39960 * 120.03211 * 359.96817 * 12 10 9
14 14 C 1.38318 * 120.35645 * 180.02562 * 13 12 10
15 15 C 1.37762 * 120.41491 * 0.02562 * 14 13 12
16 16 C 1.40756 * 120.05325 * 359.97438 * 15 14 13
17 17 C 1.41434 * 120.18010 * 179.97438 * 16 15 14
18 18 H 1.08002 * 119.99456 * 24.42865 * 17 16 15
19 19 C 1.39932 * 120.00288 * 204.42927 * 17 16 15
20 20 N 1.30824 * 120.00201 * 17.83811 * 19 17 16
21 21 Si 1.86806 * 119.99927 * 197.83727 * 19 17 16
22 22 H 1.48493 * 109.47184 * 60.00061 * 21 19 17
23 23 H 1.48506 * 109.46886 * 180.02562 * 21 19 17
24 24 H 1.48499 * 109.47168 * 299.99757 * 21 19 17
25 25 C 1.39055 * 120.02826 * 179.97438 * 12 10 9
26 26 H 1.09005 * 109.47480 * 306.20368 * 1 2 3
27 27 H 1.09003 * 109.46812 * 66.19883 * 1 2 3
28 28 H 1.08994 * 109.47543 * 186.20133 * 1 2 3
29 29 H 1.09008 * 109.46990 * 175.33798 * 3 2 1
30 30 H 1.09001 * 109.47224 * 295.33790 * 3 2 1
31 31 H 1.08992 * 109.47235 * 55.33993 * 3 2 1
32 32 H 1.09004 * 109.46727 * 60.00262 * 8 6 5
33 33 H 1.08996 * 109.47263 * 300.00445 * 8 6 5
34 34 H 1.07996 * 119.82478 * 0.02562 * 13 12 10
35 35 H 1.07999 * 119.79298 * 180.02562 * 14 13 12
36 36 H 1.08002 * 119.97692 * 179.97438 * 15 14 13
37 37 H 0.96997 * 120.00007 * 179.97438 * 20 19 17
38 38 H 1.07997 * 120.20489 * 359.69379 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.3494 1.7332 0.0000
4 8 2.3815 -0.7695 -1.0512
5 7 2.2636 -0.6095 1.2873
6 6 1.9989 -1.8809 1.5459
7 8 1.3904 -2.5521 0.7355
8 6 2.4521 -2.4958 2.8450
9 8 2.0445 -3.8888 2.8893
10 6 2.3743 -4.5876 3.9926
11 8 2.9861 -4.0483 4.8928
12 6 1.9929 -6.0106 4.1073
13 6 1.2883 -6.6327 3.0703
14 6 0.9274 -7.9642 3.1709
15 6 1.2565 -8.6932 4.2925
16 6 1.9649 -8.0850 5.3458
17 6 2.3037 -8.8307 6.4988
18 1 2.3901 -9.9057 6.4404
19 6 2.5269 -8.1759 7.7151
20 7 2.0957 -6.9530 7.8884
21 14 3.4406 -9.0479 9.0915
22 1 4.8022 -9.4152 8.6267
23 1 3.5446 -8.1452 10.2661
24 1 2.7006 -10.2766 9.4761
25 6 2.3335 -6.7328 5.2458
26 1 -0.3634 0.6070 0.8293
27 1 -0.3633 0.4147 -0.9403
28 1 -0.3634 -1.0216 0.1110
29 1 3.4354 1.7780 0.0835
30 1 2.0365 2.2102 -0.9288
31 1 1.8983 2.2528 0.8452
32 1 2.0005 -1.9580 3.6786
33 1 3.5378 -2.4329 2.9175
34 1 1.0250 -6.0702 2.1868
35 1 0.3842 -8.4353 2.3650
36 1 0.9708 -9.7323 4.3637
37 1 2.2501 -6.4992 8.7317
38 1 2.8813 -6.2583 6.0465
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000893147924.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:53:37
Heat of formation + Delta-G solvation = -116.701626 kcal
Electronic energy + Delta-G solvation = -24307.025935 eV
Core-core repulsion = 20435.220232 eV
Total energy + Delta-G solvation = -3871.805704 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.68021 -40.65050 -39.17432 -37.54634 -37.34324 -35.62830 -34.51180 -32.35127
-31.39949 -30.88560 -30.07793 -29.86825 -27.26675 -25.04192 -22.91487 -22.62689
-21.55065 -19.78583 -19.17423 -18.33549 -18.21636 -17.82400 -17.62217 -17.23168
-16.97008 -16.62991 -16.45145 -15.71028 -15.67437 -15.22577 -14.87572 -14.47491
-14.35568 -14.30824 -14.05874 -13.90624 -13.84264 -13.78083 -13.49511 -13.09664
-12.99335 -12.82267 -12.57771 -12.22883 -12.17581 -12.07811 -11.88363 -11.58265
-11.45075 -11.18849 -11.08021 -11.06643 -10.83656 -9.64593 -9.47216 -8.68454
-6.39920 -1.55873 0.08692 0.95252 1.02467 1.27187 1.38869 1.47622
1.52852 1.75973 1.80860 2.12198 2.20313 2.71343 3.00626 3.55458
3.61208 3.87011 3.98098 4.02141 4.06988 4.09818 4.15023 4.17814
4.39717 4.60862 4.80567 4.83483 4.89888 5.03100 5.09773 5.14898
5.21718 5.27191 5.42485 5.79444 5.87707 5.99254 6.19986 6.51068
6.68129 6.80179 6.85171 6.87271 8.29350
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.027628 B = 0.002470 C = 0.002324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1013.223159 B =11331.491426 C =12047.340420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.606 4.606
2 S 2.261 3.739
3 C -0.481 4.481
4 O -0.997 6.997
5 N -1.136 6.136
6 C 0.549 3.451
7 O -0.595 6.595
8 C 0.061 3.939
9 O -0.345 6.345
10 C 0.516 3.484
11 O -0.537 6.537
12 C -0.127 4.127
13 C -0.188 4.188
14 C -0.098 4.098
15 C -0.202 4.202
16 C 0.066 3.934
17 C -0.492 4.492
18 H 0.090 0.910
19 C 0.029 3.971
20 N -0.824 5.824
21 Si 0.987 3.013
22 H -0.260 1.260
23 H -0.271 1.271
24 H -0.252 1.252
25 C -0.119 4.119
26 H 0.171 0.829
27 H 0.165 0.835
28 H 0.105 0.895
29 H 0.158 0.842
30 H 0.186 0.814
31 H 0.187 0.813
32 H 0.118 0.882
33 H 0.105 0.895
34 H 0.119 0.881
35 H 0.138 0.862
36 H 0.119 0.881
37 H 0.290 0.710
38 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.062 23.275 -13.093 26.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.763 4.763
2 S 2.465 3.535
3 C -0.641 4.641
4 O -0.984 6.984
5 N -1.043 6.043
6 C 0.335 3.665
7 O -0.477 6.477
8 C -0.018 4.018
9 O -0.261 6.261
10 C 0.364 3.636
11 O -0.429 6.429
12 C -0.129 4.129
13 C -0.207 4.207
14 C -0.116 4.116
15 C -0.222 4.222
16 C 0.064 3.936
17 C -0.520 4.520
18 H 0.108 0.892
19 C -0.186 4.186
20 N -0.450 5.450
21 Si 0.807 3.193
22 H -0.185 1.185
23 H -0.195 1.195
24 H -0.176 1.176
25 C -0.139 4.139
26 H 0.189 0.811
27 H 0.183 0.817
28 H 0.124 0.876
29 H 0.176 0.824
30 H 0.204 0.796
31 H 0.205 0.795
32 H 0.135 0.865
33 H 0.122 0.878
34 H 0.137 0.863
35 H 0.156 0.844
36 H 0.137 0.863
37 H 0.100 0.900
38 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -2.550 23.052 -13.337 26.754
hybrid contribution -0.092 -0.445 0.747 0.874
sum -2.642 22.607 -12.590 26.011
Atomic orbital electron populations
1.29828 1.19241 1.12316 1.14889 1.13562 0.81557 0.85325 0.73080
1.28941 1.14649 1.03871 1.16661 1.93534 1.75132 1.68188 1.61508
1.69972 1.61570 1.24967 1.47766 1.19220 0.76748 0.83555 0.86988
1.90865 1.42944 1.65389 1.48522 1.22647 1.02615 0.78659 0.97879
1.86611 1.73248 1.24974 1.41225 1.21751 0.75171 0.88024 0.78697
1.90723 1.39953 1.71584 1.40630 1.19045 1.06601 0.88854 0.98360
1.20903 1.05341 0.96056 0.98435 1.20925 0.99481 0.93416 0.97756
1.21494 1.03979 1.00434 0.96287 1.17919 0.90216 0.91636 0.93819
1.19842 1.43271 0.95688 0.93233 0.89212 1.26910 0.93664 0.95388
1.02632 1.69865 1.34349 1.13749 1.27017 0.85176 0.79253 0.78947
0.75910 1.18484 1.19532 1.17585 1.21472 1.01362 0.95603 0.95437
0.81135 0.81657 0.87574 0.82426 0.79627 0.79540 0.86469 0.87755
0.86290 0.84395 0.86305 0.89983 0.87132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.61 -4.22 10.55 113.37 1.20 -3.02 16
2 S 2.26 28.72 4.53 -56.49 -0.26 28.46 16
3 C -0.48 2.62 10.89 113.37 1.24 3.86 16
4 O -1.00 -27.62 17.28 -133.14 -2.30 -29.92 16
5 N -1.14 -26.28 10.20 -176.97 -1.80 -28.08 16
6 C 0.55 19.11 7.45 88.02 0.66 19.77 16
7 O -0.60 -24.78 14.51 23.10 0.34 -24.44 16
8 C 0.06 2.25 6.03 71.24 0.43 2.68 16
9 O -0.34 -15.73 8.99 -49.70 -0.45 -16.18 16
10 C 0.52 26.10 7.90 70.34 0.56 26.66 16
11 O -0.54 -28.54 16.12 19.95 0.32 -28.22 16
12 C -0.13 -6.78 5.87 -20.14 -0.12 -6.90 16
13 C -0.19 -9.06 9.62 22.71 0.22 -8.84 16
14 C -0.10 -4.39 10.01 22.18 0.22 -4.17 16
15 C -0.20 -9.90 9.78 22.77 0.22 -9.68 16
16 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16
17 C -0.49 -26.75 9.05 23.47 0.21 -26.54 16
18 H 0.09 4.56 7.91 -2.91 -0.02 4.53 16
19 C 0.03 1.53 5.14 85.25 0.44 1.97 16
20 N -0.82 -45.63 10.96 21.82 0.24 -45.39 16
21 Si 0.99 39.24 29.60 68.60 2.03 41.27 16
22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16
23 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16
24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16
25 C -0.12 -6.86 8.23 23.02 0.19 -6.67 16
26 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16
27 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16
28 H 0.11 1.81 7.07 -2.39 -0.02 1.79 16
29 H 0.16 -0.76 8.14 -2.39 -0.02 -0.78 16
30 H 0.19 -2.44 8.14 -2.39 -0.02 -2.46 16
31 H 0.19 -2.25 8.14 -2.39 -0.02 -2.27 16
32 H 0.12 3.84 8.14 -2.38 -0.02 3.82 16
33 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16
34 H 0.12 5.41 7.59 -2.91 -0.02 5.39 16
35 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16
36 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16
37 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16
38 H 0.11 6.84 5.75 -2.91 -0.02 6.83 16
Total: -1.00 -97.84 349.30 4.55 -93.30
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: 1.09 Total: 16.49 kcal
Atomic # 6 Polarization: -12.64 SS G_CDS: 5.34 Total: -7.30 kcal
Atomic # 7 Polarization: -71.90 SS G_CDS: -1.57 Total: -73.47 kcal
Atomic # 8 Polarization: -96.66 SS G_CDS: -2.09 Total: -98.75 kcal
Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal
Atomic # 16 Polarization: 28.72 SS G_CDS: -0.26 Total: 28.46 kcal
Total: -97.84 4.55 -93.30 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893147924.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.403 kcal
(2) G-P(sol) polarization free energy of solvation -97.844 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds