Wall clock time and date at job start Tue Mar 31 2020 13:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42107 * 110.53990 * 2 1 4 4 O 1.42090 * 110.54571 * 223.24951 * 2 1 3 5 5 C 1.76198 * 104.44961 * 111.62094 * 2 1 3 6 6 C 1.38360 * 119.45122 * 90.00199 * 5 2 1 7 7 C 1.38342 * 119.30841 * 179.97438 * 6 5 2 8 8 C 1.40077 * 118.28861 * 0.02562 * 7 6 5 9 9 C 1.47712 * 120.56880 * 180.02562 * 8 7 6 10 10 O 1.21472 * 120.00020 * 354.80741 * 9 8 7 11 11 O 1.34716 * 119.99701 * 174.81136 * 9 8 7 12 12 C 1.45205 * 116.99485 * 183.70782 * 11 9 8 13 13 C 1.53000 * 109.46642 * 176.79088 * 12 11 9 14 14 C 1.50706 * 115.55322 * 306.73381 * 13 12 11 15 15 H 1.07996 * 119.99874 * 144.10007 * 14 13 12 16 16 C 1.37882 * 119.99692 * 324.11060 * 14 13 12 17 17 N 1.31509 * 119.99856 * 349.49252 * 16 14 13 18 18 Si 1.86796 * 119.99760 * 169.50146 * 16 14 13 19 19 H 1.48503 * 109.47306 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47413 * 119.99284 * 18 16 14 21 21 H 1.48498 * 109.47207 * 239.99801 * 18 16 14 22 22 C 1.53005 * 117.49721 * 161.07160 * 13 12 11 23 23 C 1.52997 * 117.50041 * 92.41234 * 13 12 11 24 24 C 1.39579 * 118.86558 * 0.27218 * 8 7 6 25 25 N 1.31688 * 120.55915 * 359.45302 * 24 8 7 26 26 H 1.08999 * 109.46567 * 308.37443 * 1 2 3 27 27 H 1.09000 * 109.46779 * 68.37609 * 1 2 3 28 28 H 1.08999 * 109.46544 * 188.37814 * 1 2 3 29 29 H 1.08004 * 120.34963 * 0.02562 * 6 5 2 30 30 H 1.08005 * 120.86190 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47547 * 296.78594 * 12 11 9 32 32 H 1.09001 * 109.47254 * 56.79533 * 12 11 9 33 33 H 0.97009 * 119.99814 * 185.03294 * 17 16 14 34 34 H 1.08997 * 117.49786 * 359.97438 * 22 13 12 35 35 H 1.08999 * 117.49852 * 145.02111 * 22 13 12 36 36 H 1.08999 * 117.49774 * 214.98016 * 23 13 12 37 37 H 1.09000 * 117.49735 * 359.96580 * 23 13 12 38 38 H 1.07999 * 119.72245 * 179.72577 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4235 -1.9915 1.7547 7 6 2.7692 -2.4818 3.0012 8 6 2.9340 -1.5694 4.0512 9 6 3.3034 -2.0378 5.4025 10 8 3.3746 -3.2280 5.6343 11 8 3.5611 -1.1449 6.3778 12 6 3.9982 -1.6743 7.6573 13 6 4.3169 -0.5169 8.6059 14 6 5.2842 0.5102 8.0762 15 1 5.1547 1.5530 8.3255 16 6 6.3343 0.1185 7.2731 17 7 6.6166 -1.1586 7.1363 18 14 7.3560 1.4020 6.3797 19 1 6.8373 2.7567 6.6975 20 1 8.7718 1.2989 6.8156 21 1 7.2709 1.1708 4.9153 22 6 4.3625 -0.8236 10.1042 23 6 3.1944 -0.0242 9.5214 24 6 2.7382 -0.2104 3.7999 25 7 2.4147 0.2076 2.5938 26 1 -0.3632 0.6380 0.8057 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3632 -1.0167 0.1497 29 1 2.2884 -2.6654 0.9216 30 1 2.9077 -3.5410 3.1610 31 1 3.2061 -2.2880 8.0864 32 1 4.8913 -2.2823 7.5131 33 1 7.3986 -1.4310 6.6310 34 1 4.1651 -1.8497 10.4141 35 1 5.0918 -0.2821 10.7067 36 1 3.1557 1.0428 9.7408 37 1 2.2287 -0.5242 9.4475 38 1 2.8573 0.5047 4.6004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910212944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:40 Heat of formation + Delta-G solvation = -80.180801 kcal Electronic energy + Delta-G solvation = -25057.304456 eV Core-core repulsion = 21187.082414 eV Total energy + Delta-G solvation = -3870.222042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66128 -39.27190 -37.38005 -36.87658 -36.20762 -35.28058 -32.85912 -32.24452 -32.05242 -29.90295 -27.08709 -25.62853 -24.85491 -23.94460 -21.39598 -20.95245 -19.56501 -19.29928 -18.28003 -17.64332 -17.13933 -16.56589 -16.46640 -15.86900 -15.69637 -15.40374 -15.01029 -14.70364 -14.19559 -14.15367 -13.73512 -13.57244 -13.55386 -13.26970 -13.05300 -12.35187 -12.25198 -12.22453 -12.15321 -11.72769 -11.61408 -11.27615 -11.03871 -10.90124 -10.57918 -10.45535 -10.39159 -10.25749 -9.85298 -9.72174 -9.67739 -9.53755 -9.17434 -8.87087 -8.22328 -6.14076 -4.18234 -0.37060 0.04844 0.91570 2.40018 2.59414 3.08722 3.23229 3.34073 3.36863 3.42128 3.66594 3.71572 4.23850 4.30864 4.39241 4.51337 4.61484 4.76309 4.77850 4.86555 5.08001 5.24552 5.25558 5.41989 5.60596 5.82829 5.92374 6.08954 6.20650 6.33094 6.48480 6.56064 6.65818 6.85690 7.15729 7.23862 7.29031 7.34326 7.81152 8.20869 8.31319 8.77792 9.42980 10.87892 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003588 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.856262 B = 7801.507268 C = 8521.286094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.510 3.490 3 O -0.911 6.911 4 O -0.931 6.931 5 C -0.417 4.417 6 C -0.101 4.101 7 C -0.034 4.034 8 C -0.107 4.107 9 C 0.500 3.500 10 O -0.509 6.509 11 O -0.315 6.315 12 C 0.116 3.884 13 C 0.046 3.954 14 C -0.482 4.482 15 H 0.065 0.935 16 C 0.075 3.925 17 N -0.885 5.885 18 Si 0.892 3.108 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.281 1.281 22 C -0.191 4.191 23 C -0.208 4.208 24 C 0.140 3.860 25 N -0.400 5.400 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.031 0.969 32 H 0.116 0.884 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -1.648 -12.130 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.684 3.316 3 O -0.908 6.908 4 O -0.927 6.927 5 C -0.635 4.635 6 C -0.122 4.122 7 C -0.060 4.060 8 C -0.111 4.111 9 C 0.343 3.657 10 O -0.400 6.400 11 O -0.229 6.229 12 C 0.044 3.956 13 C 0.046 3.954 14 C -0.519 4.519 15 H 0.083 0.917 16 C -0.128 4.128 17 N -0.522 5.522 18 Si 0.720 3.280 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.207 1.207 22 C -0.229 4.229 23 C -0.246 4.246 24 C -0.021 4.021 25 N -0.109 5.109 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.667 -0.959 -12.931 18.127 hybrid contribution 0.405 -0.826 0.718 1.167 sum -12.262 -1.785 -12.213 17.398 Atomic orbital electron populations 1.30169 1.24830 1.12240 1.12322 1.05413 0.78249 0.74835 0.73069 1.93622 1.76862 1.35513 1.84838 1.93617 1.77765 1.62294 1.59053 1.33471 1.10568 0.99418 1.20072 1.21935 0.96663 0.95086 0.98563 1.21879 0.91932 1.01323 0.90908 1.20764 1.00978 0.96028 0.93288 1.20667 0.74852 0.84829 0.85354 1.90785 1.48866 1.17638 1.82749 1.86516 1.75114 1.38457 1.22782 1.22936 0.98802 0.96435 0.77468 1.18883 0.95075 0.94989 0.86470 1.20475 1.09718 0.92566 1.29184 0.91720 1.24927 0.97104 0.95301 0.95468 1.69783 1.26561 1.14658 1.41242 0.86519 0.79715 0.81929 0.79864 1.19380 1.20964 1.20700 1.22972 1.00959 0.98460 1.00472 1.22980 0.92810 0.99038 1.09740 1.23707 0.90275 0.93706 0.94397 1.67905 1.07857 1.36244 0.98857 0.84461 0.84589 0.84924 0.82043 0.82312 0.95102 0.86659 0.92673 0.91438 0.89665 0.90175 0.91255 0.79314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.87 10.80 101.05 1.09 -1.78 16 2 S 2.51 23.68 5.86 -107.50 -0.63 23.05 16 3 O -0.91 -12.45 17.73 -57.54 -1.02 -13.47 16 4 O -0.93 -10.54 17.09 -57.54 -0.98 -11.53 16 5 C -0.42 -5.09 6.53 -17.46 -0.11 -5.20 16 6 C -0.10 -1.13 9.49 -39.50 -0.37 -1.50 16 7 C -0.03 -0.45 9.72 -38.85 -0.38 -0.83 16 8 C -0.11 -1.75 5.89 -104.84 -0.62 -2.37 16 9 C 0.50 9.98 7.89 34.60 0.27 10.25 16 10 O -0.51 -10.92 16.22 -19.24 -0.31 -11.24 16 11 O -0.31 -6.97 9.15 -40.53 -0.37 -7.34 16 12 C 0.12 2.71 4.55 37.16 0.17 2.88 16 13 C 0.05 1.10 2.12 -155.66 -0.33 0.77 16 14 C -0.48 -12.57 8.75 -34.44 -0.30 -12.87 16 15 H 0.06 1.69 7.84 -52.49 -0.41 1.27 16 16 C 0.07 1.97 5.19 -17.82 -0.09 1.88 16 17 N -0.89 -23.94 10.80 55.43 0.60 -23.34 16 18 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 23 C -0.21 -4.28 9.92 -26.69 -0.26 -4.54 16 24 C 0.14 2.21 10.79 -17.11 -0.18 2.03 16 25 N -0.40 -5.93 10.02 -12.10 -0.12 -6.05 16 26 H 0.14 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.14 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.16 1.23 7.55 -52.48 -0.40 0.83 16 30 H 0.16 1.85 7.75 -52.48 -0.41 1.45 16 31 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.12 3.00 6.05 -51.93 -0.31 2.68 16 33 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.19 2.93 7.64 -52.49 -0.40 2.53 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -34.40 349.53 -8.43 -42.82 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.44 Total: 1.64 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.39 Total: -15.62 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.48 Total: -29.40 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.69 Total: -43.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 23.68 SS G_CDS: -0.63 Total: 23.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.40 -8.43 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910212944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.356 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds