Wall clock time and date at job start Tue Mar 31 2020 13:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42107 * 110.53990 * 2 1 4 4 O 1.42090 * 110.54571 * 223.24951 * 2 1 3 5 5 C 1.76198 * 104.44961 * 111.62094 * 2 1 3 6 6 C 1.38360 * 119.45122 * 90.00199 * 5 2 1 7 7 C 1.38342 * 119.30841 * 179.97438 * 6 5 2 8 8 C 1.40077 * 118.28861 * 0.02562 * 7 6 5 9 9 C 1.47712 * 120.56880 * 180.02562 * 8 7 6 10 10 O 1.21472 * 120.00020 * 354.80741 * 9 8 7 11 11 O 1.34716 * 119.99701 * 174.81136 * 9 8 7 12 12 C 1.45205 * 116.99485 * 183.70782 * 11 9 8 13 13 C 1.53000 * 109.46642 * 176.79088 * 12 11 9 14 14 C 1.50706 * 115.55322 * 306.73381 * 13 12 11 15 15 H 1.07996 * 119.99874 * 144.10007 * 14 13 12 16 16 C 1.37882 * 119.99692 * 324.11060 * 14 13 12 17 17 N 1.31509 * 119.99856 * 349.49252 * 16 14 13 18 18 Si 1.86796 * 119.99760 * 169.50146 * 16 14 13 19 19 H 1.48503 * 109.47306 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47413 * 119.99284 * 18 16 14 21 21 H 1.48498 * 109.47207 * 239.99801 * 18 16 14 22 22 C 1.53005 * 117.49721 * 161.07160 * 13 12 11 23 23 C 1.52997 * 117.50041 * 92.41234 * 13 12 11 24 24 C 1.39579 * 118.86558 * 0.27218 * 8 7 6 25 25 N 1.31688 * 120.55915 * 359.45302 * 24 8 7 26 26 H 1.08999 * 109.46567 * 308.37443 * 1 2 3 27 27 H 1.09000 * 109.46779 * 68.37609 * 1 2 3 28 28 H 1.08999 * 109.46544 * 188.37814 * 1 2 3 29 29 H 1.08004 * 120.34963 * 0.02562 * 6 5 2 30 30 H 1.08005 * 120.86190 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47547 * 296.78594 * 12 11 9 32 32 H 1.09001 * 109.47254 * 56.79533 * 12 11 9 33 33 H 0.97009 * 119.99814 * 185.03294 * 17 16 14 34 34 H 1.08997 * 117.49786 * 359.97438 * 22 13 12 35 35 H 1.08999 * 117.49852 * 145.02111 * 22 13 12 36 36 H 1.08999 * 117.49774 * 214.98016 * 23 13 12 37 37 H 1.09000 * 117.49735 * 359.96580 * 23 13 12 38 38 H 1.07999 * 119.72245 * 179.72577 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4235 -1.9915 1.7547 7 6 2.7692 -2.4818 3.0012 8 6 2.9340 -1.5694 4.0512 9 6 3.3034 -2.0378 5.4025 10 8 3.3746 -3.2280 5.6343 11 8 3.5611 -1.1449 6.3778 12 6 3.9982 -1.6743 7.6573 13 6 4.3169 -0.5169 8.6059 14 6 5.2842 0.5102 8.0762 15 1 5.1547 1.5530 8.3255 16 6 6.3343 0.1185 7.2731 17 7 6.6166 -1.1586 7.1363 18 14 7.3560 1.4020 6.3797 19 1 6.8373 2.7567 6.6975 20 1 8.7718 1.2989 6.8156 21 1 7.2709 1.1708 4.9153 22 6 4.3625 -0.8236 10.1042 23 6 3.1944 -0.0242 9.5214 24 6 2.7382 -0.2104 3.7999 25 7 2.4147 0.2076 2.5938 26 1 -0.3632 0.6380 0.8057 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3632 -1.0167 0.1497 29 1 2.2884 -2.6654 0.9216 30 1 2.9077 -3.5410 3.1610 31 1 3.2061 -2.2880 8.0864 32 1 4.8913 -2.2823 7.5131 33 1 7.3986 -1.4310 6.6310 34 1 4.1651 -1.8497 10.4141 35 1 5.0918 -0.2821 10.7067 36 1 3.1557 1.0428 9.7408 37 1 2.2287 -0.5242 9.4475 38 1 2.8573 0.5047 4.6004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910212944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:40 Heat of formation + Delta-G solvation = -104.212622 kcal Electronic energy + Delta-G solvation = -25058.346554 eV Core-core repulsion = 21187.082414 eV Total energy + Delta-G solvation = -3871.264140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92921 -40.71498 -38.60371 -38.21473 -37.05752 -36.96229 -34.21979 -33.98445 -33.14477 -30.32576 -28.73102 -27.52240 -26.21182 -25.03378 -23.04333 -22.39731 -21.15539 -20.43695 -19.33144 -18.90772 -18.69022 -17.86043 -17.44262 -17.26290 -17.21948 -16.58069 -16.43991 -16.02948 -15.68924 -15.35178 -15.02717 -14.71310 -14.37278 -13.97854 -13.93456 -13.91057 -13.80434 -13.58056 -13.20372 -13.09417 -12.94266 -12.80969 -12.58685 -12.37946 -12.14466 -12.00435 -11.95857 -11.53727 -11.38826 -11.34751 -11.09428 -10.87839 -10.78569 -10.69055 -10.10043 -8.12946 -6.21595 -1.20675 -0.92631 -0.14363 1.18057 1.34256 1.41447 1.49094 1.58605 1.71684 2.27057 2.36801 2.78073 2.93112 2.98087 3.38016 3.47056 3.52026 3.60901 3.74752 3.78736 4.12900 4.17959 4.24229 4.29926 4.34382 4.48411 4.57834 4.70197 4.77055 4.92079 4.94615 4.98050 5.10788 5.17201 5.37635 5.51181 5.58875 5.79041 6.24232 6.30054 6.64298 6.79169 7.40814 8.86972 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003588 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.856262 B = 7801.507268 C = 8521.286094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.610 4.610 2 S 2.511 3.489 3 O -0.961 6.961 4 O -0.952 6.952 5 C -0.417 4.417 6 C -0.090 4.090 7 C -0.028 4.028 8 C -0.134 4.134 9 C 0.499 3.501 10 O -0.532 6.532 11 O -0.328 6.328 12 C 0.125 3.875 13 C 0.007 3.993 14 C -0.493 4.493 15 H 0.058 0.942 16 C 0.037 3.963 17 N -0.907 5.907 18 Si 0.940 3.060 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.289 1.289 22 C -0.184 4.184 23 C -0.184 4.184 24 C 0.131 3.869 25 N -0.418 5.418 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.204 0.796 30 H 0.174 0.826 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 -1.796 -13.757 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.766 4.766 2 S 2.688 3.312 3 O -0.959 6.959 4 O -0.948 6.948 5 C -0.633 4.633 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.138 4.138 9 C 0.344 3.656 10 O -0.425 6.425 11 O -0.242 6.242 12 C 0.052 3.948 13 C 0.007 3.993 14 C -0.530 4.530 15 H 0.076 0.924 16 C -0.163 4.163 17 N -0.546 5.546 18 Si 0.766 3.234 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.216 1.216 22 C -0.222 4.222 23 C -0.221 4.221 24 C -0.029 4.029 25 N -0.127 5.127 26 H 0.167 0.833 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.221 0.779 30 H 0.191 0.809 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.948 -1.102 -14.514 20.864 hybrid contribution 0.986 -0.788 1.098 1.673 sum -13.962 -1.890 -13.416 19.455 Atomic orbital electron populations 1.29957 1.16996 1.14988 1.14650 1.05484 0.81063 0.73187 0.71451 1.93567 1.79916 1.37488 1.84884 1.93583 1.80213 1.62294 1.58753 1.34214 1.08726 0.99958 1.20355 1.22388 0.94747 0.95236 0.98660 1.22157 0.90810 1.01625 0.90816 1.20616 1.04124 0.96940 0.92087 1.21262 0.73823 0.84415 0.86113 1.90751 1.50117 1.18325 1.83264 1.86514 1.75468 1.39275 1.22969 1.22644 0.97829 0.96096 0.78250 1.19000 0.97016 0.95590 0.87724 1.20706 1.10200 0.92816 1.29297 0.92416 1.25463 0.98164 0.96520 0.96173 1.69920 1.26835 1.15772 1.42032 0.85776 0.78765 0.80532 0.78316 1.18721 1.20548 1.21550 1.22972 1.01310 0.99531 0.98419 1.23000 0.92959 0.99505 1.06634 1.23576 0.90958 0.93416 0.94947 1.67930 1.08708 1.37158 0.98914 0.83258 0.81519 0.81735 0.77938 0.80874 0.93927 0.89815 0.93116 0.89917 0.90024 0.89625 0.89110 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -2.35 10.80 113.37 1.22 -1.13 16 2 S 2.51 41.64 5.86 -56.49 -0.33 41.31 16 3 O -0.96 -25.63 17.73 -127.65 -2.26 -27.89 16 4 O -0.95 -19.23 17.09 -127.65 -2.18 -21.41 16 5 C -0.42 -9.47 6.53 84.71 0.55 -8.91 16 6 C -0.09 -1.78 9.49 22.32 0.21 -1.57 16 7 C -0.03 -0.70 9.72 22.74 0.22 -0.48 16 8 C -0.13 -4.45 5.89 -20.00 -0.12 -4.57 16 9 C 0.50 20.54 7.89 70.33 0.56 21.09 16 10 O -0.53 -23.42 16.22 19.93 0.32 -23.09 16 11 O -0.33 -15.01 9.15 -56.26 -0.52 -15.52 16 12 C 0.12 5.95 4.55 71.98 0.33 6.28 16 13 C 0.01 0.34 2.12 -52.93 -0.11 0.23 16 14 C -0.49 -26.08 8.75 25.60 0.22 -25.86 16 15 H 0.06 3.05 7.84 -2.91 -0.02 3.02 16 16 C 0.04 1.98 5.19 84.66 0.44 2.42 16 17 N -0.91 -50.55 10.80 21.45 0.23 -50.31 16 18 Si 0.94 43.57 29.55 68.60 2.03 45.60 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 C -0.18 -7.74 9.96 30.62 0.30 -7.44 16 23 C -0.18 -7.30 9.92 30.62 0.30 -7.00 16 24 C 0.13 4.26 10.79 85.04 0.92 5.17 16 25 N -0.42 -12.30 10.02 -192.18 -1.93 -14.22 16 26 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.20 2.25 7.55 -2.91 -0.02 2.23 16 30 H 0.17 3.80 7.75 -2.91 -0.02 3.78 16 31 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 32 H 0.08 4.53 6.05 -2.39 -0.01 4.51 16 33 H 0.26 14.05 8.32 -92.70 -0.77 13.28 16 34 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.18 5.92 7.64 -2.91 -0.02 5.89 16 Total: -1.00 -77.24 349.53 1.51 -75.73 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.09 Total: 11.57 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.05 Total: -21.76 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -1.69 Total: -64.54 kcal Atomic # 8 Polarization: -83.28 SS G_CDS: -4.64 Total: -87.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 41.64 SS G_CDS: -0.33 Total: 41.31 kcal Total: -77.24 1.51 -75.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910212944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.479 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds