Wall clock time and date at job start Tue Mar 31 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48499 * 109.47417 * 239.99796 * 3 2 1 5 5 H 1.48495 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46845 * 120.00247 * 3 2 1 7 7 C 1.40227 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99457 * 196.73671 * 7 2 1 9 9 C 1.41109 * 120.00000 * 16.73982 * 7 2 1 10 10 C 1.40894 * 120.09709 * 205.48456 * 9 7 2 11 11 C 1.36316 * 119.88884 * 179.97438 * 10 9 7 12 12 C 1.40009 * 120.10661 * 359.97413 * 11 10 9 13 13 C 1.47648 * 119.89644 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99873 * 353.60311 * 13 12 11 15 15 N 1.34778 * 120.00073 * 173.60294 * 13 12 11 16 16 C 1.47419 * 125.64502 * 178.27682 * 15 13 12 17 17 C 1.54911 * 104.83267 * 204.15995 * 16 15 13 18 18 F 1.39904 * 111.00366 * 81.06283 * 17 16 15 19 19 F 1.39896 * 111.01087 * 204.87761 * 17 16 15 20 20 C 1.55159 * 101.57988 * 322.99129 * 17 16 15 21 21 C 1.47012 * 125.64767 * 358.31226 * 15 13 12 22 22 H 1.08998 * 109.88613 * 59.49302 * 21 15 13 23 23 C 1.50699 * 109.88592 * 298.47897 * 21 15 13 24 24 O 1.20823 * 119.99996 * 0.31822 * 23 21 15 25 25 O 1.34228 * 120.00230 * 180.31641 * 23 21 15 26 26 C 1.40015 * 120.20952 * 0.28102 * 12 11 10 27 27 C 1.36315 * 120.10643 * 359.48020 * 26 12 11 28 28 H 0.96999 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05345 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.94645 * 179.97438 * 11 10 9 31 31 H 1.09008 * 110.37055 * 322.99725 * 16 15 13 32 32 H 1.09003 * 110.37164 * 85.32455 * 16 15 13 33 33 H 1.08990 * 110.71835 * 277.13488 * 20 17 16 34 34 H 1.08997 * 110.71888 * 153.85947 * 20 17 16 35 35 H 0.96704 * 117.00528 * 180.02562 * 25 23 21 36 36 H 1.08002 * 119.94672 * 179.72933 * 26 12 11 37 37 H 1.08000 * 120.05326 * 180.26151 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2124 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0533 -1.2343 0.2688 9 6 1.3469 -2.4104 -0.3531 10 6 1.8180 -3.6469 0.1309 11 6 1.1761 -4.7996 -0.2119 12 6 0.0502 -4.7560 -1.0430 13 6 -0.6418 -6.0074 -1.4109 14 8 -0.1689 -7.0805 -1.0900 15 7 -1.7976 -5.9600 -2.1024 16 6 -2.5711 -7.1271 -2.5640 17 6 -3.3924 -6.6068 -3.7700 18 9 -2.6136 -6.5778 -4.9319 19 9 -4.5450 -7.3761 -3.9613 20 6 -3.7520 -5.1707 -3.3056 21 6 -2.4955 -4.7360 -2.5220 22 1 -1.8461 -4.1404 -3.1637 23 6 -2.8952 -3.9331 -1.3110 24 8 -2.6225 -4.3331 -0.2040 25 8 -3.5541 -2.7734 -1.4621 26 6 -0.4184 -3.5301 -1.5307 27 6 0.2139 -2.3717 -1.1894 28 1 -0.4850 0.8400 -0.0004 29 1 2.6861 -3.6814 0.7724 30 1 1.5367 -5.7480 0.1582 31 1 -1.9002 -7.9266 -2.8785 32 1 -3.2365 -7.4775 -1.7749 33 1 -4.6267 -5.1833 -2.6556 34 1 -3.9167 -4.5181 -4.1630 35 1 -3.7889 -2.2936 -0.6560 36 1 -1.2847 -3.5018 -2.1750 37 1 -0.1509 -1.4262 -1.5627 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910426591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:42 Heat of formation + Delta-G solvation = -162.022942 kcal Electronic energy + Delta-G solvation = -28461.847362 eV Core-core repulsion = 24034.235992 eV Total energy + Delta-G solvation = -4427.611370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.11903 -47.30018 -41.08084 -38.92665 -37.46196 -36.61872 -35.76320 -33.96399 -31.47803 -30.93348 -29.65694 -29.00708 -26.15725 -24.96907 -22.64597 -21.95068 -21.23123 -20.95065 -19.26429 -18.38028 -17.69421 -17.53912 -17.40176 -16.60402 -16.40307 -16.05673 -15.64488 -15.21604 -15.08818 -14.59371 -14.11033 -14.02450 -13.62731 -13.56061 -13.51061 -13.28676 -13.08200 -12.80644 -12.72565 -12.54671 -12.26636 -11.98989 -11.61193 -11.38505 -11.28962 -11.25168 -11.09968 -10.94694 -10.68092 -10.35585 -10.11021 -9.56030 -9.37871 -9.19250 -8.74386 -7.78694 -7.59811 -7.09050 -4.66258 2.06863 2.40998 2.62627 2.87092 2.90352 2.93540 2.96052 3.04088 3.39232 3.50426 3.69185 3.76715 3.84982 4.19848 4.48827 4.63880 4.79090 5.11606 5.21228 5.24593 5.39816 5.49520 5.52566 5.67057 5.82762 6.23689 6.25206 6.67984 6.74118 6.75927 6.94607 7.04259 7.34507 7.44426 7.64268 7.78184 7.85144 8.00492 8.11389 8.31749 8.56290 8.67957 8.76255 9.82874 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.004046 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.769188 B = 6919.023627 C = 7635.005826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.235 4.235 11 C -0.018 4.018 12 C -0.266 4.266 13 C 0.603 3.397 14 O -0.557 6.557 15 N -0.608 5.608 16 C 0.078 3.922 17 C 0.274 3.726 18 F -0.180 7.180 19 F -0.183 7.183 20 C -0.158 4.158 21 C 0.142 3.858 22 H 0.138 0.862 23 C 0.469 3.531 24 O -0.476 6.476 25 O -0.516 6.516 26 C -0.107 4.107 27 C -0.169 4.169 28 H 0.287 0.713 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 -2.418 -6.912 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.254 4.254 11 C -0.038 4.038 12 C -0.270 4.270 13 C 0.403 3.597 14 O -0.436 6.436 15 N -0.345 5.345 16 C -0.046 4.046 17 C 0.237 3.763 18 F -0.161 7.161 19 F -0.163 7.163 20 C -0.197 4.197 21 C 0.035 3.965 22 H 0.155 0.845 23 C 0.308 3.692 24 O -0.360 6.360 25 O -0.329 6.329 26 C -0.125 4.125 27 C -0.188 4.188 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.275 0.725 36 H 0.127 0.873 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.067 -3.191 -6.714 11.725 hybrid contribution 0.004 1.122 0.509 1.232 sum -9.063 -2.069 -6.205 11.177 Atomic orbital electron populations 1.69726 1.07913 1.30124 1.31776 1.26096 0.94852 1.01883 0.91852 0.86236 0.80198 0.79327 0.80385 1.18432 1.20003 1.18656 1.19839 0.98065 0.91059 1.37886 0.89682 1.17796 0.90406 0.92201 0.87047 1.20721 1.04444 0.92656 1.07620 1.20321 0.92612 0.97256 0.93581 1.18588 1.03676 0.90327 1.14408 1.18389 0.76771 0.90227 0.74355 1.90668 1.65819 1.31817 1.55345 1.48023 1.23682 1.03679 1.59121 1.22930 0.96262 0.91191 0.94236 1.21818 0.79022 0.91934 0.83562 1.93065 1.74719 1.96983 1.51288 1.93031 1.50153 1.77285 1.95880 1.23714 0.98553 0.94586 1.02816 1.21598 0.94272 0.88562 0.92063 0.84488 1.23019 0.74764 0.80155 0.91289 1.90827 1.49238 1.69227 1.26717 1.84418 1.70131 1.34799 1.43568 1.21541 0.98745 0.93157 0.99092 1.20963 0.99623 0.96622 1.01566 0.90188 0.88213 0.88011 0.87398 0.88446 0.86793 0.85961 0.72546 0.87322 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.90 10.94 55.56 0.61 -17.29 16 2 C 0.07 1.69 5.15 -17.31 -0.09 1.61 16 3 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.80 9.05 -37.75 -0.34 -11.14 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 10 C -0.23 -5.70 9.73 -39.27 -0.38 -6.08 16 11 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 12 C -0.27 -6.17 5.11 -104.73 -0.53 -6.71 16 13 C 0.60 13.14 7.07 -12.42 -0.09 13.05 16 14 O -0.56 -13.31 16.61 5.29 0.09 -13.23 16 15 N -0.61 -10.43 2.84 -169.27 -0.48 -10.92 16 16 C 0.08 1.06 6.52 -2.53 -0.02 1.05 16 17 C 0.27 3.14 2.64 -24.58 -0.06 3.08 16 18 F -0.18 -2.29 17.24 2.25 0.04 -2.25 16 19 F -0.18 -2.04 17.24 2.25 0.04 -2.00 16 20 C -0.16 -1.59 6.07 -24.89 -0.15 -1.75 16 21 C 0.14 2.02 2.64 -68.11 -0.18 1.84 16 22 H 0.14 1.91 6.07 -51.93 -0.32 1.59 16 23 C 0.47 7.52 4.53 36.01 0.16 7.69 16 24 O -0.48 -9.70 15.06 -18.75 -0.28 -9.99 16 25 O -0.52 -6.66 13.40 -39.25 -0.53 -7.18 16 26 C -0.11 -2.36 6.77 -39.61 -0.27 -2.63 16 27 C -0.17 -4.05 8.63 -39.28 -0.34 -4.39 16 28 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.35 7.64 -52.49 -0.40 1.94 16 31 H 0.11 1.49 8.05 -51.92 -0.42 1.07 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.11 0.99 7.85 -51.93 -0.41 0.58 16 34 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.41 4.22 9.10 45.56 0.41 4.64 16 36 H 0.11 2.04 2.09 -57.53 -0.12 1.92 16 37 H 0.12 2.92 6.17 -52.49 -0.32 2.59 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -31.01 320.74 -6.37 -37.37 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -2.39 Total: 11.34 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.26 Total: -2.56 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.13 Total: -28.21 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.72 Total: -30.40 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.01 -6.37 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910426591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.652 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds