Wall clock time and date at job start Tue Mar 31 2020 14:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86797 * 119.99713 * 2 1 4 4 H 1.48503 * 109.46955 * 239.99688 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47456 * 120.00153 * 3 2 1 7 7 C 1.39922 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99648 * 197.77487 * 7 2 1 9 9 C 1.41321 * 120.00238 * 17.78093 * 7 2 1 10 10 C 1.40825 * 120.22608 * 24.58400 * 9 7 2 11 11 C 1.37541 * 119.90806 * 179.97438 * 10 9 7 12 12 C 1.38666 * 120.38100 * 359.72521 * 11 10 9 13 13 C 1.39049 * 120.47036 * 0.55295 * 12 11 10 14 14 N 1.39888 * 119.96234 * 179.72228 * 13 12 11 15 15 C 1.46504 * 119.99749 * 359.72864 * 14 13 12 16 16 C 1.53872 * 113.59727 * 254.18873 * 15 14 13 17 17 C 1.53499 * 86.87202 * 220.38252 * 16 15 14 18 18 C 1.53333 * 87.60330 * 25.08997 * 17 16 15 19 19 C 1.52580 * 120.61352 * 149.62549 * 17 16 15 20 20 S 1.81493 * 89.77295 * 93.85990 * 19 17 16 21 21 O 1.42104 * 112.73780 * 280.05445 * 20 19 17 22 22 O 1.42103 * 112.82148 * 136.35136 * 20 19 17 23 23 C 1.52599 * 120.49424 * 260.60754 * 17 16 15 24 24 C 1.38633 * 120.07667 * 359.44750 * 13 12 11 25 25 F 1.35098 * 120.18982 * 180.29390 * 24 13 12 26 26 H 0.96995 * 120.00416 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.04593 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.80818 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.76129 * 180.28172 * 12 11 10 30 30 H 0.97000 * 120.00008 * 180.02562 * 14 13 12 31 31 H 1.09005 * 112.83730 * 25.33325 * 15 14 13 32 32 H 1.08995 * 113.63444 * 334.86538 * 16 15 14 33 33 H 1.09000 * 113.63172 * 105.84214 * 16 15 14 34 34 H 1.08996 * 113.63789 * 220.40107 * 18 17 16 35 35 H 1.09001 * 113.63321 * 89.41969 * 18 17 16 36 36 H 1.09000 * 113.17056 * 209.08362 * 19 17 16 37 37 H 1.09000 * 113.16938 * 338.63408 * 19 17 16 38 38 H 1.08997 * 113.16685 * 21.26749 * 23 17 16 39 39 H 1.09001 * 113.16515 * 150.82418 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 3.0495 -1.2339 0.2861 9 6 1.3522 -2.4066 -0.3727 10 6 0.2217 -2.3626 -1.2112 11 6 -0.4113 -3.5295 -1.5707 12 6 0.0605 -4.7519 -1.1168 13 6 1.1720 -4.8134 -0.2836 14 7 1.6355 -6.0518 0.1727 15 6 0.9462 -7.2827 -0.2225 16 6 0.1042 -7.9062 0.9044 17 6 0.6150 -9.2694 0.4174 18 6 1.8355 -8.5365 -0.1520 19 6 0.7913 -10.4275 1.3950 20 16 -0.8746 -11.0189 0.9835 21 8 -1.8958 -10.2988 1.6603 22 8 -0.9300 -12.4271 0.8011 23 6 -0.2531 -10.1456 -0.4811 24 6 1.8249 -3.6491 0.0908 25 9 2.9086 -3.7066 0.8954 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1473 -1.4139 -1.5721 28 1 -1.2779 -3.4939 -2.2142 29 1 -0.4416 -5.6624 -1.4091 30 1 2.4106 -6.0953 0.7543 31 1 0.4078 -7.1821 -1.1650 32 1 0.4485 -7.6423 1.9043 33 1 -0.9693 -7.7690 0.7749 34 1 2.1501 -8.9047 -1.1284 35 1 2.6608 -8.4477 0.5546 36 1 1.5778 -11.1220 1.0998 37 1 0.8873 -10.1032 2.4312 38 1 -1.0268 -9.5864 -1.0072 39 1 0.3271 -10.7843 -1.1470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168206550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:57 Heat of formation + Delta-G solvation = -46.416691 kcal Electronic energy + Delta-G solvation = -24778.228300 eV Core-core repulsion = 20921.843169 eV Total energy + Delta-G solvation = -3856.385131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.11759 -40.21782 -37.57752 -37.39990 -36.32151 -35.02116 -33.40946 -31.44980 -29.56804 -27.19789 -27.09472 -25.97493 -25.35357 -22.63086 -20.79223 -20.30774 -19.29666 -18.53632 -17.56361 -16.80206 -16.70823 -16.37599 -16.17612 -15.88510 -15.39859 -14.99940 -14.87482 -14.35030 -14.06850 -13.95932 -13.42643 -13.20403 -12.93988 -12.57233 -12.53859 -12.48155 -12.43503 -12.33961 -12.06207 -11.82219 -11.57894 -11.20966 -11.11086 -11.00893 -10.85756 -10.61891 -10.58037 -10.45960 -10.28825 -9.87631 -9.55646 -9.36944 -8.87085 -7.41766 -6.85301 -6.32860 -4.43185 -0.12734 1.70904 2.70736 2.97353 3.04167 3.07419 3.20016 3.39280 3.61086 3.70838 3.88822 4.08846 4.25066 4.42633 4.54389 4.65520 4.81922 4.83637 5.05200 5.17789 5.35473 5.42758 5.56707 5.60991 5.64048 5.91044 5.92128 5.96351 6.17616 6.21095 6.62540 6.85570 6.93180 7.14154 7.23813 7.56785 7.70370 7.98806 8.08082 8.27565 8.41827 8.60208 8.75871 8.92401 10.10273 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.002524 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.613584 B =11091.517265 C =11403.010655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.183 4.183 11 C -0.078 4.078 12 C -0.287 4.287 13 C 0.203 3.797 14 N -0.746 5.746 15 C 0.148 3.852 16 C -0.141 4.141 17 C -0.073 4.073 18 C -0.113 4.113 19 C -0.582 4.582 20 S 2.403 3.597 21 O -0.909 6.909 22 O -0.933 6.933 23 C -0.576 4.576 24 C -0.097 4.097 25 F -0.168 7.168 26 H 0.283 0.717 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.393 0.607 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -16.675 -0.534 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.114 3.886 10 C -0.203 4.203 11 C -0.097 4.097 12 C -0.310 4.310 13 C 0.104 3.896 14 N -0.378 5.378 15 C 0.040 3.960 16 C -0.181 4.181 17 C -0.076 4.076 18 C -0.153 4.153 19 C -0.711 4.711 20 S 2.585 3.415 21 O -0.906 6.906 22 O -0.930 6.930 23 C -0.705 4.705 24 C -0.121 4.121 25 F -0.147 7.147 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.139 -17.225 -0.141 17.263 hybrid contribution 1.687 1.278 0.026 2.116 sum 0.548 -15.948 -0.115 15.957 Atomic orbital electron populations 1.69839 1.07612 1.29576 1.33878 1.25920 0.94747 1.01425 0.92060 0.86303 0.80139 0.79820 0.80145 1.18683 1.20217 1.18884 1.19482 0.98339 0.91004 1.39346 0.90094 1.17403 0.91669 0.90293 0.89236 1.21033 0.99530 0.97186 1.02575 1.20477 0.97959 0.92598 0.98661 1.19738 1.02555 0.96944 1.11801 1.17426 0.94062 0.83266 0.94854 1.44281 1.34524 1.02226 1.56743 1.22058 0.93351 0.83107 0.97482 1.23689 1.02041 0.90978 1.01346 1.21337 0.99635 0.92688 0.93918 1.23129 0.95628 0.95060 1.01501 1.30806 1.24225 1.08022 1.08063 1.08550 0.77999 0.74648 0.80275 1.93734 1.52638 1.74330 1.69913 1.93633 1.87361 1.28140 1.83908 1.30734 1.09957 1.11870 1.17940 1.17266 0.94093 0.93314 1.07444 1.91201 1.53675 1.97131 1.72738 0.90612 0.86036 0.88949 0.88661 0.77233 0.87444 0.88401 0.89711 0.90304 0.88919 0.83897 0.85682 0.85375 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.90 10.96 55.55 0.61 -19.29 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.45 -12.14 8.78 -37.78 -0.33 -12.48 16 8 H 0.08 2.15 7.73 -52.49 -0.41 1.74 16 9 C 0.12 3.15 5.58 -106.79 -0.60 2.56 16 10 C -0.18 -4.64 8.69 -38.86 -0.34 -4.97 16 11 C -0.08 -1.75 10.01 -39.68 -0.40 -2.15 16 12 C -0.29 -6.09 9.27 -39.12 -0.36 -6.46 16 13 C 0.20 4.43 6.65 -83.73 -0.56 3.87 16 14 N -0.75 -12.78 5.54 -51.26 -0.28 -13.07 16 15 C 0.15 1.93 4.01 -67.02 -0.27 1.66 16 16 C -0.14 -1.63 7.54 -26.02 -0.20 -1.83 16 17 C -0.07 -0.62 0.93 -154.50 -0.14 -0.77 16 18 C -0.11 -1.10 7.54 -26.10 -0.20 -1.30 16 19 C -0.58 -3.75 7.69 36.94 0.28 -3.46 16 20 S 2.40 18.25 7.54 -107.50 -0.81 17.44 16 21 O -0.91 -10.30 18.12 -57.31 -1.04 -11.34 16 22 O -0.93 -9.80 18.18 -57.31 -1.04 -10.84 16 23 C -0.58 -3.78 7.69 36.95 0.28 -3.50 16 24 C -0.10 -2.44 7.31 -38.47 -0.28 -2.72 16 25 F -0.17 -4.16 16.08 2.25 0.04 -4.12 16 26 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 27 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 28 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.10 1.75 6.05 -52.49 -0.32 1.43 16 30 H 0.39 6.46 8.19 -40.82 -0.33 6.13 16 31 H 0.11 1.43 6.19 -51.93 -0.32 1.11 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.15 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -32.90 339.95 -10.27 -43.17 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.64 Total: 9.13 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -3.19 Total: -29.69 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.32 Total: -32.36 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -2.08 Total: -22.18 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 18.25 SS G_CDS: -0.81 Total: 17.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.90 -10.27 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168206550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.246 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds