Wall clock time and date at job start Tue Mar 31 2020 14:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99567 * 2 1 4 4 H 1.48506 * 109.46640 * 239.99910 * 3 2 1 5 5 H 1.48496 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46863 * 120.00137 * 3 2 1 7 7 C 1.37876 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46832 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.39913 * 120.00082 * 180.02562 * 12 11 10 14 14 C 1.38855 * 120.00893 * 359.72589 * 13 12 11 15 15 C 1.38325 * 120.00081 * 180.29695 * 14 13 12 16 16 F 1.35098 * 119.99995 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00272 * 359.95909 * 15 14 13 18 18 O 1.36112 * 119.99337 * 180.02562 * 17 15 14 19 19 C 1.42899 * 116.99680 * 270.01781 * 18 17 15 20 20 F 1.39897 * 109.47183 * 60.00537 * 19 18 17 21 21 F 1.39902 * 109.46851 * 180.02562 * 19 18 17 22 22 F 1.39896 * 109.47670 * 300.00098 * 19 18 17 23 23 C 1.38812 * 120.00701 * 0.04068 * 17 15 14 24 24 F 1.35105 * 119.99405 * 179.97438 * 23 17 15 25 25 C 1.38323 * 120.00876 * 359.97438 * 23 17 15 26 26 H 0.97003 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47383 * 60.00112 * 9 7 2 28 28 H 1.08998 * 109.47186 * 299.99500 * 9 7 2 29 29 H 1.09004 * 109.47078 * 60.00201 * 10 9 7 30 30 H 1.08993 * 109.47500 * 299.99891 * 10 9 7 31 31 H 1.09004 * 109.46941 * 60.00343 * 11 10 9 32 32 H 1.08994 * 109.47858 * 300.00016 * 11 10 9 33 33 H 0.96998 * 119.99898 * 0.02562 * 12 11 10 34 34 H 1.08001 * 119.99493 * 0.25592 * 14 13 12 35 35 H 1.08005 * 120.00616 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 7 2.4325 -6.1006 0.0031 13 6 1.9661 -7.4197 0.0032 14 6 0.6010 -7.6737 0.0085 15 6 0.1401 -8.9779 0.0148 16 9 -1.1881 -9.2249 0.0205 17 6 1.0423 -10.0329 0.0150 18 8 0.5886 -11.3161 0.0207 19 6 0.3765 -11.9235 1.2967 20 9 -0.5729 -11.1860 2.0121 21 9 -0.0859 -13.2319 1.1192 22 9 1.5809 -11.9475 2.0079 23 6 2.4070 -9.7792 0.0097 24 9 3.2849 -10.8062 0.0105 25 6 2.8683 -8.4752 0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8923 30 1 2.8727 -3.6047 -0.8876 31 1 0.8542 -5.0454 -0.8878 32 1 0.8534 -5.0442 0.8921 33 1 3.3861 -5.9233 0.0034 34 1 -0.1009 -6.8528 0.0083 35 1 3.9302 -8.2779 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:06 Heat of formation + Delta-G solvation = -275.284577 kcal Electronic energy + Delta-G solvation = -26986.592432 eV Core-core repulsion = 22012.212929 eV Total energy + Delta-G solvation = -4974.379503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.084 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.41193 -49.37552 -49.30245 -48.17065 -48.06444 -40.08750 -38.61748 -35.92395 -33.63657 -31.69008 -30.75658 -29.09228 -26.72128 -25.55361 -23.97986 -23.16237 -22.11852 -20.64194 -20.10178 -19.29538 -19.20123 -18.51937 -17.77515 -16.84086 -16.54135 -16.22062 -16.08623 -15.77368 -15.62334 -15.09393 -15.05896 -14.93013 -14.90153 -14.77593 -14.52671 -14.49151 -14.28208 -14.25289 -13.98186 -13.70492 -13.06355 -12.84478 -12.78745 -12.32777 -11.97626 -11.82581 -11.51262 -10.99453 -10.90271 -10.69900 -10.27972 -9.90318 -9.63530 -9.28501 -9.18855 -8.48289 -7.91719 -6.13213 -4.16909 0.38130 0.63452 1.73314 2.76193 2.92725 3.06021 3.24812 3.30329 3.31816 3.52695 3.83404 3.86027 3.98247 4.35042 4.48108 4.63735 4.75058 5.00525 5.22983 5.27616 5.39534 5.44011 5.49604 5.69561 5.80932 5.87183 6.31214 6.34016 6.50437 6.77325 6.91484 7.37722 7.47445 7.58344 7.83928 8.24553 8.89130 9.48250 10.97924 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.002221 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.124059 B =12602.208769 C =13189.384016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.109 3.891 12 N -0.717 5.717 13 C 0.298 3.702 14 C -0.240 4.240 15 C 0.196 3.804 16 F -0.114 7.114 17 C -0.090 4.090 18 O -0.294 6.294 19 C 0.580 3.420 20 F -0.170 7.170 21 F -0.139 7.139 22 F -0.171 7.171 23 C 0.193 3.807 24 F -0.116 7.116 25 C -0.243 4.243 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.408 0.592 34 H 0.156 0.844 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -22.550 1.235 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.014 4.014 12 N -0.339 5.339 13 C 0.186 3.814 14 C -0.264 4.264 15 C 0.175 3.825 16 F -0.092 7.092 17 C -0.137 4.137 18 O -0.214 6.214 19 C 0.491 3.509 20 F -0.152 7.152 21 F -0.120 7.120 22 F -0.153 7.153 23 C 0.172 3.828 24 F -0.095 7.095 25 C -0.267 4.267 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.244 0.756 34 H 0.174 0.826 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.574 -22.380 1.128 22.556 hybrid contribution 0.643 0.647 0.301 0.961 sum 3.217 -21.733 1.429 22.016 Atomic orbital electron populations 1.69940 1.06075 1.26992 1.50217 1.25020 0.94873 0.99369 0.95081 0.86630 0.79585 0.82978 0.78659 1.20194 1.21198 1.20192 1.21131 0.92977 0.90878 1.51457 0.92674 1.19026 0.93761 0.90831 0.97655 1.21885 0.99914 0.92854 1.01267 1.21929 0.92214 0.85520 1.01731 1.45399 1.10220 1.01804 1.76489 1.17335 0.91238 0.85444 0.87415 1.20614 0.95412 0.95457 1.14915 1.17188 0.77328 0.92008 0.95959 1.91572 1.29921 1.94986 1.92743 1.17849 0.90347 0.81495 1.23999 1.86749 1.84360 1.26376 1.23938 1.20290 0.74756 0.76815 0.79055 1.93287 1.65493 1.77349 1.79071 1.93265 1.88682 1.34913 1.95184 1.93277 1.46455 1.96290 1.79314 1.17122 0.84623 0.84581 0.96458 1.91562 1.67618 1.57399 1.92875 1.20447 1.01222 0.89076 1.15963 0.92750 0.96227 0.96240 0.92464 0.92449 0.91421 0.91440 0.75589 0.82608 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.86 9.11 -34.44 -0.31 -14.18 16 8 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.04 5.27 -26.73 -0.14 -2.18 16 11 C 0.11 1.44 4.91 -4.04 -0.02 1.42 16 12 N -0.72 -7.60 5.74 -58.60 -0.34 -7.94 16 13 C 0.30 3.13 6.65 -83.71 -0.56 2.57 16 14 C -0.24 -2.67 9.29 -39.32 -0.37 -3.03 16 15 C 0.20 2.35 7.02 -39.34 -0.28 2.07 16 16 F -0.11 -1.44 16.76 2.25 0.04 -1.40 16 17 C -0.09 -1.09 5.34 -39.16 -0.21 -1.30 16 18 O -0.29 -3.70 10.02 -20.10 -0.20 -3.90 16 19 C 0.58 6.76 3.80 101.05 0.38 7.14 16 20 F -0.17 -2.03 16.61 2.25 0.04 -1.99 16 21 F -0.14 -1.52 17.53 2.25 0.04 -1.48 16 22 F -0.17 -1.99 16.62 2.25 0.04 -1.95 16 23 C 0.19 2.15 7.02 -39.34 -0.28 1.87 16 24 F -0.12 -1.33 16.76 2.25 0.04 -1.30 16 25 C -0.24 -2.34 9.87 -39.32 -0.39 -2.73 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.90 7.95 -51.93 -0.41 0.48 16 32 H 0.07 0.90 7.94 -51.93 -0.41 0.48 16 33 H 0.41 3.66 8.49 -40.82 -0.35 3.31 16 34 H 0.16 1.65 6.73 -52.49 -0.35 1.30 16 35 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -28.12 330.69 -5.23 -33.35 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.18 Total: -2.72 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.40 Total: -6.41 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.40 Total: -32.81 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.90 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.19 Total: -8.12 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.12 -5.23 -33.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.937 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds