Wall clock time and date at job start Tue Mar 31 2020 14:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99567 * 2 1 4 4 H 1.48506 * 109.46640 * 239.99910 * 3 2 1 5 5 H 1.48496 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46863 * 120.00137 * 3 2 1 7 7 C 1.37876 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46832 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.39913 * 120.00082 * 180.02562 * 12 11 10 14 14 C 1.38855 * 120.00893 * 359.72589 * 13 12 11 15 15 C 1.38325 * 120.00081 * 180.29695 * 14 13 12 16 16 F 1.35098 * 119.99995 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00272 * 359.95909 * 15 14 13 18 18 O 1.36112 * 119.99337 * 180.02562 * 17 15 14 19 19 C 1.42899 * 116.99680 * 270.01781 * 18 17 15 20 20 F 1.39897 * 109.47183 * 60.00537 * 19 18 17 21 21 F 1.39902 * 109.46851 * 180.02562 * 19 18 17 22 22 F 1.39896 * 109.47670 * 300.00098 * 19 18 17 23 23 C 1.38812 * 120.00701 * 0.04068 * 17 15 14 24 24 F 1.35105 * 119.99405 * 179.97438 * 23 17 15 25 25 C 1.38323 * 120.00876 * 359.97438 * 23 17 15 26 26 H 0.97003 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47383 * 60.00112 * 9 7 2 28 28 H 1.08998 * 109.47186 * 299.99500 * 9 7 2 29 29 H 1.09004 * 109.47078 * 60.00201 * 10 9 7 30 30 H 1.08993 * 109.47500 * 299.99891 * 10 9 7 31 31 H 1.09004 * 109.46941 * 60.00343 * 11 10 9 32 32 H 1.08994 * 109.47858 * 300.00016 * 11 10 9 33 33 H 0.96998 * 119.99898 * 0.02562 * 12 11 10 34 34 H 1.08001 * 119.99493 * 0.25592 * 14 13 12 35 35 H 1.08005 * 120.00616 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 7 2.4325 -6.1006 0.0031 13 6 1.9661 -7.4197 0.0032 14 6 0.6010 -7.6737 0.0085 15 6 0.1401 -8.9779 0.0148 16 9 -1.1881 -9.2249 0.0205 17 6 1.0423 -10.0329 0.0150 18 8 0.5886 -11.3161 0.0207 19 6 0.3765 -11.9235 1.2967 20 9 -0.5729 -11.1860 2.0121 21 9 -0.0859 -13.2319 1.1192 22 9 1.5809 -11.9475 2.0079 23 6 2.4070 -9.7792 0.0097 24 9 3.2849 -10.8062 0.0105 25 6 2.8683 -8.4752 0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8923 30 1 2.8727 -3.6047 -0.8876 31 1 0.8542 -5.0454 -0.8878 32 1 0.8534 -5.0442 0.8921 33 1 3.3861 -5.9233 0.0034 34 1 -0.1009 -6.8528 0.0083 35 1 3.9302 -8.2779 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:06 Heat of formation + Delta-G solvation = -290.623489 kcal Electronic energy + Delta-G solvation = -26987.257577 eV Core-core repulsion = 22012.212929 eV Total energy + Delta-G solvation = -4975.044648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.084 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.33096 -50.26843 -50.21622 -49.07765 -48.99400 -40.98343 -39.54804 -37.08046 -35.30859 -33.25174 -31.63976 -30.23592 -28.14709 -26.57812 -25.24474 -24.26782 -23.17389 -22.09836 -21.01382 -20.21156 -20.13122 -19.45534 -18.78970 -18.34704 -17.73179 -17.11918 -17.08219 -16.77169 -16.53364 -16.42821 -16.29737 -15.96897 -15.84956 -15.80459 -15.67806 -15.44361 -15.20683 -15.17442 -14.91559 -14.62804 -14.34722 -14.28383 -13.83326 -13.58273 -13.52291 -13.11942 -12.68418 -12.54729 -12.46060 -12.27524 -11.69644 -11.45106 -11.19574 -11.03217 -10.53138 -10.04536 -8.79593 -8.19304 -6.29465 -0.51453 -0.21631 0.82699 1.42750 1.44041 1.51949 1.84943 2.01444 2.19009 2.42321 2.63886 2.92171 2.94693 3.11625 3.15261 3.63362 3.77956 3.90934 4.12738 4.13177 4.25606 4.53209 4.56511 4.63064 4.89298 4.96463 4.98123 5.04920 5.19956 5.51536 5.56434 5.75090 5.86916 5.94408 6.25388 6.58499 6.88476 7.40185 8.92013 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.002221 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.124059 B =12602.208769 C =13189.384016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.122 3.878 12 N -0.709 5.709 13 C 0.298 3.702 14 C -0.240 4.240 15 C 0.185 3.815 16 F -0.122 7.122 17 C -0.100 4.100 18 O -0.303 6.303 19 C 0.583 3.417 20 F -0.173 7.173 21 F -0.135 7.135 22 F -0.170 7.170 23 C 0.187 3.813 24 F -0.119 7.119 25 C -0.223 4.223 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.419 0.581 34 H 0.159 0.841 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -22.674 1.244 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.002 4.002 12 N -0.333 5.333 13 C 0.186 3.814 14 C -0.264 4.264 15 C 0.164 3.836 16 F -0.101 7.101 17 C -0.147 4.147 18 O -0.224 6.224 19 C 0.493 3.507 20 F -0.155 7.155 21 F -0.117 7.117 22 F -0.152 7.152 23 C 0.165 3.835 24 F -0.097 7.097 25 C -0.246 4.246 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.258 0.742 34 H 0.176 0.824 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.444 -22.526 1.136 22.988 hybrid contribution 0.063 0.642 0.299 0.711 sum 4.507 -21.884 1.435 22.389 Atomic orbital electron populations 1.70073 1.07714 1.27785 1.51714 1.25928 0.95693 1.03233 0.94938 0.85579 0.78303 0.78496 0.79155 1.19214 1.21288 1.19225 1.21676 0.93660 0.92334 1.50363 0.91927 1.18937 0.94430 0.92583 0.95430 1.21578 0.98572 0.92285 1.01924 1.21558 0.92023 0.84709 1.01865 1.45077 1.10326 1.01085 1.76784 1.17305 0.91065 0.85451 0.87535 1.20698 0.95995 0.95197 1.14525 1.17269 0.77054 0.92363 0.96897 1.91548 1.30501 1.95067 1.92952 1.18060 0.90968 0.81306 1.24393 1.86725 1.84528 1.26749 1.24396 1.20241 0.74717 0.76870 0.78867 1.93281 1.65606 1.77469 1.79111 1.93272 1.88638 1.34608 1.95153 1.93274 1.46407 1.96295 1.79272 1.17184 0.84180 0.85090 0.97013 1.91558 1.67532 1.57614 1.92963 1.20637 1.02443 0.87917 1.13617 0.92844 0.98461 0.98498 0.91781 0.91734 0.91422 0.91486 0.74249 0.82389 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.29 21.45 0.28 -53.97 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -28.42 9.11 25.60 0.23 -28.19 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.11 -3.40 5.27 30.59 0.16 -3.23 16 11 C 0.12 3.02 4.91 86.38 0.42 3.44 16 12 N -0.71 -13.07 5.74 -339.30 -1.95 -15.02 16 13 C 0.30 5.53 6.65 38.15 0.25 5.79 16 14 C -0.24 -5.02 9.29 22.44 0.21 -4.81 16 15 C 0.19 4.29 7.02 22.43 0.16 4.44 16 16 F -0.12 -3.08 16.76 44.97 0.75 -2.33 16 17 C -0.10 -2.34 5.34 22.55 0.12 -2.22 16 18 O -0.30 -7.46 10.02 -94.82 -0.95 -8.41 16 19 C 0.58 13.20 3.80 113.37 0.43 13.64 16 20 F -0.17 -4.05 16.61 44.97 0.75 -3.30 16 21 F -0.14 -2.88 17.53 44.97 0.79 -2.09 16 22 F -0.17 -3.79 16.62 44.97 0.75 -3.05 16 23 C 0.19 3.80 7.02 22.43 0.16 3.96 16 24 F -0.12 -2.50 16.76 44.97 0.75 -1.75 16 25 C -0.22 -3.64 9.87 22.44 0.22 -3.42 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 32 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 33 H 0.42 6.05 8.49 -92.71 -0.79 5.26 16 34 H 0.16 3.20 6.73 -2.91 -0.02 3.18 16 35 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -60.08 330.69 6.56 -53.51 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 0.38 Total: 1.21 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 2.98 Total: -8.87 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -1.66 Total: -68.99 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.95 Total: -8.41 kcal Atomic # 9 Polarization: -16.30 SS G_CDS: 3.79 Total: -12.51 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -60.08 6.56 -53.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.109 kcal (2) G-P(sol) polarization free energy of solvation -60.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds