Wall clock time and date at job start Tue Mar 31 2020 14:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48502 * 109.47377 * 240.00519 * 3 2 1 5 5 H 1.48503 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47155 * 120.00325 * 3 2 1 7 7 C 1.39933 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99659 * 178.33277 * 7 2 1 9 9 C 1.41410 * 119.99919 * 358.33840 * 7 2 1 10 10 C 1.40787 * 120.20337 * 213.61173 * 9 7 2 11 11 C 1.37652 * 119.89319 * 179.97438 * 10 9 7 12 12 C 1.38514 * 120.32774 * 359.74842 * 11 10 9 13 13 C 1.39302 * 120.42289 * 0.51364 * 12 11 10 14 14 N 1.39722 * 119.95802 * 179.76013 * 13 12 11 15 15 C 1.39711 * 120.00125 * 318.27630 * 14 13 12 16 16 C 1.38910 * 120.05984 * 352.50303 * 15 14 13 17 17 C 1.38298 * 119.89927 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.98660 * 179.97438 * 17 16 15 19 19 C 1.38536 * 120.02398 * 359.97438 * 17 16 15 20 20 C 1.38230 * 120.12705 * 359.77357 * 19 17 16 21 21 C 1.38129 * 120.10017 * 0.50396 * 20 19 17 22 22 C 1.50704 * 120.01388 * 179.74843 * 21 20 19 23 23 F 1.39898 * 109.46897 * 359.72297 * 22 21 20 24 24 F 1.39897 * 109.46957 * 239.72482 * 22 21 20 25 25 F 1.39897 * 109.47075 * 119.72522 * 22 21 20 26 26 C 1.38340 * 120.09241 * 359.48626 * 13 12 11 27 27 H 0.96993 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.05400 * 359.96382 * 10 9 7 29 29 H 1.08004 * 119.83352 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.78947 * 180.27528 * 12 11 10 31 31 H 0.96998 * 120.00209 * 138.26894 * 14 13 12 32 32 H 1.07999 * 120.04836 * 359.95515 * 16 15 14 33 33 H 1.08008 * 119.93677 * 180.02562 * 19 17 16 34 34 H 1.08002 * 119.95041 * 180.27610 * 20 19 17 35 35 H 1.08003 * 120.16159 * 180.23141 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0876 -1.2120 -0.0278 9 6 1.3013 -2.4363 0.0344 10 6 1.8416 -3.5468 0.7103 11 6 1.1480 -4.7354 0.7407 12 6 -0.0824 -4.8435 0.1138 13 6 -0.6270 -3.7548 -0.5634 14 7 -1.8666 -3.8761 -1.1966 15 6 -2.1721 -5.0327 -1.9184 16 6 -1.1938 -5.9938 -2.1392 17 6 -1.5000 -7.1377 -2.8537 18 9 -0.5498 -8.0734 -3.0699 19 6 -2.7808 -7.3243 -3.3478 20 6 -3.7564 -6.3710 -3.1242 21 6 -3.4548 -5.2239 -2.4162 22 6 -4.5186 -4.1832 -2.1785 23 9 -5.7164 -4.5970 -2.7709 24 9 -4.1156 -2.9675 -2.7413 25 9 -4.7111 -4.0190 -0.8026 26 6 0.0550 -2.5520 -0.6050 27 1 -0.4850 0.8400 0.0004 28 1 2.7988 -3.4664 1.2039 29 1 1.5637 -5.5869 1.2591 30 1 -0.6211 -5.7790 0.1469 31 1 -2.5151 -3.1574 -1.1351 32 1 -0.1956 -5.8479 -1.7538 33 1 -3.0185 -8.2184 -3.9052 34 1 -4.7551 -6.5215 -3.5068 35 1 -0.3680 -1.7061 -1.1265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174485997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:03 Heat of formation + Delta-G solvation = -149.636660 kcal Electronic energy + Delta-G solvation = -27102.403818 eV Core-core repulsion = 22564.242042 eV Total energy + Delta-G solvation = -4538.161776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.10409 -48.89869 -47.63732 -47.51474 -39.79693 -37.77320 -35.16875 -33.49699 -31.58074 -30.27063 -29.68249 -27.76668 -25.67051 -25.38609 -22.92455 -22.13075 -21.01784 -20.42956 -18.61545 -18.38784 -18.34500 -17.85768 -17.34255 -16.34107 -15.64777 -15.54550 -15.49686 -14.85588 -14.74070 -14.47231 -14.39640 -14.26146 -13.99283 -13.79054 -13.73631 -13.69443 -13.38016 -13.14971 -12.91825 -12.65722 -12.50494 -11.83650 -11.61432 -11.49125 -11.21236 -11.18554 -10.98995 -10.67173 -10.26440 -9.92802 -9.77769 -9.33331 -8.96928 -8.25615 -7.47950 -6.98358 -6.67753 -4.55901 0.91042 1.33931 2.60644 2.75748 2.80442 3.02565 3.04536 3.10207 3.46241 3.50829 3.82751 3.87798 4.06614 4.33098 4.50438 4.54608 4.75101 5.05838 5.31152 5.42836 5.44473 5.79323 5.91560 6.04228 6.10115 6.21218 6.29573 6.54459 6.71004 6.86861 6.90483 7.05965 7.15946 7.41693 7.60819 7.70959 7.92775 8.00327 8.16202 8.49743 8.76018 8.78246 10.15286 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.004274 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.688899 B = 6550.293995 C = 8020.293844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.218 4.218 11 C -0.084 4.084 12 C -0.252 4.252 13 C 0.140 3.860 14 N -0.659 5.659 15 C 0.297 3.703 16 C -0.228 4.228 17 C 0.172 3.828 18 F -0.134 7.134 19 C -0.225 4.225 20 C -0.001 4.001 21 C -0.287 4.287 22 C 0.514 3.486 23 F -0.180 7.180 24 F -0.178 7.178 25 F -0.177 7.177 26 C -0.165 4.165 27 H 0.280 0.720 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.407 0.593 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -8.504 -5.293 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.238 4.238 11 C -0.102 4.102 12 C -0.273 4.273 13 C 0.048 3.952 14 N -0.276 5.276 15 C 0.188 3.812 16 C -0.251 4.251 17 C 0.151 3.849 18 F -0.112 7.112 19 C -0.246 4.246 20 C -0.020 4.020 21 C -0.294 4.294 22 C 0.460 3.540 23 F -0.161 7.161 24 F -0.159 7.159 25 F -0.158 7.158 26 C -0.186 4.186 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.245 0.755 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.623 -8.276 -5.192 12.391 hybrid contribution -0.021 1.117 0.158 1.128 sum -7.644 -7.159 -5.034 11.620 Atomic orbital electron populations 1.69714 1.07385 1.29151 1.37357 1.25893 0.94958 1.01324 0.92285 0.86220 0.79825 0.79915 0.79879 1.18931 1.20336 1.18992 1.19529 0.94654 0.89903 1.45086 0.90324 1.17457 0.91206 0.92065 0.87583 1.21179 1.01729 0.94606 1.06306 1.20410 0.94538 0.96679 0.98616 1.20348 0.99636 0.98027 1.09286 1.17637 0.85064 0.96121 0.96367 1.42574 1.17418 1.16488 1.51129 1.17157 0.90327 0.86926 0.86806 1.21126 1.02210 0.94520 1.07214 1.17532 0.85784 0.86254 0.95314 1.91509 1.63585 1.63505 1.92612 1.20739 0.92009 1.02830 1.09019 1.20447 0.99350 0.89945 0.92240 1.19371 0.92959 1.00034 1.17003 1.18146 0.80876 0.80859 0.74095 1.93128 1.48811 1.90144 1.84025 1.93225 1.90318 1.47292 1.85067 1.93232 1.95513 1.95862 1.31228 1.21461 0.97441 0.95660 1.04070 0.90859 0.88480 0.88635 0.88422 0.75517 0.81853 0.84414 0.84016 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.19 10.62 55.55 0.59 -19.60 16 2 C 0.07 1.73 5.40 -17.34 -0.09 1.63 16 3 Si 0.92 18.28 29.56 -169.99 -5.02 13.26 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 8 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 9 C 0.12 3.02 5.55 -106.85 -0.59 2.42 16 10 C -0.22 -5.00 9.79 -38.83 -0.38 -5.38 16 11 C -0.08 -1.74 10.01 -39.69 -0.40 -2.14 16 12 C -0.25 -5.21 7.37 -39.08 -0.29 -5.50 16 13 C 0.14 3.04 5.86 -83.83 -0.49 2.55 16 14 N -0.66 -12.47 5.20 -8.46 -0.04 -12.51 16 15 C 0.30 4.98 6.32 -83.77 -0.53 4.45 16 16 C -0.23 -3.72 8.00 -39.31 -0.31 -4.04 16 17 C 0.17 2.44 7.30 -39.45 -0.29 2.15 16 18 F -0.13 -1.90 17.27 2.25 0.04 -1.87 16 19 C -0.23 -2.68 10.02 -39.47 -0.40 -3.07 16 20 C 0.00 -0.01 9.42 -39.62 -0.37 -0.39 16 21 C -0.29 -4.17 5.39 -104.41 -0.56 -4.73 16 22 C 0.51 7.40 2.80 36.01 0.10 7.50 16 23 F -0.18 -2.31 15.97 2.25 0.04 -2.27 16 24 F -0.18 -2.74 16.10 2.25 0.04 -2.70 16 25 F -0.18 -2.72 16.39 2.25 0.04 -2.69 16 26 C -0.16 -4.02 8.58 -38.67 -0.33 -4.35 16 27 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.10 1.87 6.63 -52.48 -0.35 1.52 16 31 H 0.41 7.56 6.30 -40.82 -0.26 7.30 16 32 H 0.16 2.91 5.35 -52.49 -0.28 2.63 16 33 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.14 1.32 7.15 -52.49 -0.38 0.94 16 35 H 0.13 3.42 6.14 -52.48 -0.32 3.10 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -25.09 315.19 -7.26 -32.35 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -2.40 Total: 12.18 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -5.28 Total: -20.90 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.55 Total: -32.11 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 0.15 Total: -9.53 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.09 -7.26 -32.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174485997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.290 kcal (2) G-P(sol) polarization free energy of solvation -25.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds