Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48502 * 109.47377 * 240.00519 * 3 2 1 5 5 H 1.48503 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47155 * 120.00325 * 3 2 1 7 7 C 1.39933 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99659 * 178.33277 * 7 2 1 9 9 C 1.41410 * 119.99919 * 358.33840 * 7 2 1 10 10 C 1.40787 * 120.20337 * 213.61173 * 9 7 2 11 11 C 1.37652 * 119.89319 * 179.97438 * 10 9 7 12 12 C 1.38514 * 120.32774 * 359.74842 * 11 10 9 13 13 C 1.39302 * 120.42289 * 0.51364 * 12 11 10 14 14 N 1.39722 * 119.95802 * 179.76013 * 13 12 11 15 15 C 1.39711 * 120.00125 * 318.27630 * 14 13 12 16 16 C 1.38910 * 120.05984 * 352.50303 * 15 14 13 17 17 C 1.38298 * 119.89927 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.98660 * 179.97438 * 17 16 15 19 19 C 1.38536 * 120.02398 * 359.97438 * 17 16 15 20 20 C 1.38230 * 120.12705 * 359.77357 * 19 17 16 21 21 C 1.38129 * 120.10017 * 0.50396 * 20 19 17 22 22 C 1.50704 * 120.01388 * 179.74843 * 21 20 19 23 23 F 1.39898 * 109.46897 * 359.72297 * 22 21 20 24 24 F 1.39897 * 109.46957 * 239.72482 * 22 21 20 25 25 F 1.39897 * 109.47075 * 119.72522 * 22 21 20 26 26 C 1.38340 * 120.09241 * 359.48626 * 13 12 11 27 27 H 0.96993 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.05400 * 359.96382 * 10 9 7 29 29 H 1.08004 * 119.83352 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.78947 * 180.27528 * 12 11 10 31 31 H 0.96998 * 120.00209 * 138.26894 * 14 13 12 32 32 H 1.07999 * 120.04836 * 359.95515 * 16 15 14 33 33 H 1.08008 * 119.93677 * 180.02562 * 19 17 16 34 34 H 1.08002 * 119.95041 * 180.27610 * 20 19 17 35 35 H 1.08003 * 120.16159 * 180.23141 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0876 -1.2120 -0.0278 9 6 1.3013 -2.4363 0.0344 10 6 1.8416 -3.5468 0.7103 11 6 1.1480 -4.7354 0.7407 12 6 -0.0824 -4.8435 0.1138 13 6 -0.6270 -3.7548 -0.5634 14 7 -1.8666 -3.8761 -1.1966 15 6 -2.1721 -5.0327 -1.9184 16 6 -1.1938 -5.9938 -2.1392 17 6 -1.5000 -7.1377 -2.8537 18 9 -0.5498 -8.0734 -3.0699 19 6 -2.7808 -7.3243 -3.3478 20 6 -3.7564 -6.3710 -3.1242 21 6 -3.4548 -5.2239 -2.4162 22 6 -4.5186 -4.1832 -2.1785 23 9 -5.7164 -4.5970 -2.7709 24 9 -4.1156 -2.9675 -2.7413 25 9 -4.7111 -4.0190 -0.8026 26 6 0.0550 -2.5520 -0.6050 27 1 -0.4850 0.8400 0.0004 28 1 2.7988 -3.4664 1.2039 29 1 1.5637 -5.5869 1.2591 30 1 -0.6211 -5.7790 0.1469 31 1 -2.5151 -3.1574 -1.1351 32 1 -0.1956 -5.8479 -1.7538 33 1 -3.0185 -8.2184 -3.9052 34 1 -4.7551 -6.5215 -3.5068 35 1 -0.3680 -1.7061 -1.1265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174485997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -159.646319 kcal Electronic energy + Delta-G solvation = -27102.837870 eV Core-core repulsion = 22564.242042 eV Total energy + Delta-G solvation = -4538.595827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.26016 -50.02592 -48.75571 -48.71330 -41.11635 -39.32035 -36.65152 -35.22237 -32.77880 -31.64658 -31.41241 -29.26525 -27.28963 -26.72542 -24.20708 -23.45980 -22.57636 -22.02032 -19.82511 -19.63026 -19.55647 -19.25096 -18.70447 -17.84473 -17.05754 -16.88547 -16.70419 -16.38530 -16.26352 -15.66215 -15.61735 -15.47548 -15.33029 -15.14445 -14.92245 -14.86209 -14.71408 -14.42831 -14.35822 -14.05600 -13.98267 -13.54239 -12.96659 -12.83093 -12.74321 -12.70698 -12.50824 -12.22234 -11.80162 -11.67354 -11.39050 -11.10558 -10.12082 -9.71770 -9.27765 -8.65036 -8.32932 -6.44873 -0.23538 0.17215 0.92512 1.06991 1.38326 1.48869 1.51035 1.60809 2.11871 2.21054 2.31133 2.67502 2.75035 2.93680 3.18908 3.35025 3.58840 3.69310 4.05144 4.09982 4.28503 4.44769 4.58114 4.71474 4.78358 4.85105 5.03875 5.10403 5.11933 5.14212 5.31950 5.37782 5.63206 5.80211 5.90953 5.99991 6.10328 6.39449 6.46386 6.71027 6.93072 6.95887 8.37392 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.004274 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.688899 B = 6550.293995 C = 8020.293844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.235 4.235 11 C -0.080 4.080 12 C -0.245 4.245 13 C 0.151 3.849 14 N -0.671 5.671 15 C 0.274 3.726 16 C -0.245 4.245 17 C 0.170 3.830 18 F -0.134 7.134 19 C -0.201 4.201 20 C 0.010 3.990 21 C -0.285 4.285 22 C 0.516 3.484 23 F -0.167 7.167 24 F -0.187 7.187 25 F -0.185 7.185 26 C -0.193 4.193 27 H 0.284 0.716 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.405 0.595 32 H 0.143 0.857 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 -10.483 -6.196 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.254 4.254 11 C -0.098 4.098 12 C -0.266 4.266 13 C 0.058 3.942 14 N -0.290 5.290 15 C 0.168 3.832 16 C -0.268 4.268 17 C 0.149 3.851 18 F -0.112 7.112 19 C -0.221 4.221 20 C -0.009 4.009 21 C -0.291 4.291 22 C 0.462 3.538 23 F -0.148 7.148 24 F -0.168 7.168 25 F -0.166 7.166 26 C -0.215 4.215 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.242 0.758 32 H 0.161 0.839 33 H 0.195 0.805 34 H 0.196 0.804 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.851 -10.308 -6.119 14.901 hybrid contribution 0.215 1.476 0.339 1.530 sum -8.636 -8.831 -5.780 13.638 Atomic orbital electron populations 1.69818 1.08695 1.30018 1.38243 1.26725 0.95713 1.04369 0.91453 0.85185 0.78517 0.75640 0.79957 1.18464 1.19599 1.18481 1.19791 0.94836 0.91031 1.47140 0.90409 1.17812 0.91978 0.93024 0.88441 1.21352 1.02424 0.94927 1.06742 1.20772 0.94208 0.96955 0.97901 1.20607 0.99622 0.98362 1.07976 1.17662 0.85694 0.95352 0.95537 1.42423 1.16416 1.17624 1.52494 1.17315 0.91551 0.86406 0.87908 1.21004 1.01351 0.95749 1.08703 1.17656 0.86768 0.85523 0.95113 1.91514 1.63876 1.63281 1.92537 1.21169 0.90325 1.03574 1.07015 1.20899 1.01001 0.88382 0.90584 1.19551 0.91943 1.00853 1.16756 1.18146 0.81327 0.80578 0.73776 1.93151 1.47991 1.89918 1.83715 1.93212 1.90489 1.47967 1.85153 1.93219 1.95575 1.95889 1.31938 1.21334 0.98200 0.96337 1.05634 0.90566 0.87694 0.85223 0.86527 0.75793 0.83894 0.80539 0.80404 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.92 10.62 21.82 0.23 -43.69 16 2 C 0.03 1.50 5.40 85.25 0.46 1.96 16 3 Si 0.99 38.42 29.56 68.60 2.03 40.45 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.50 -26.39 9.05 23.46 0.21 -26.18 16 8 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.09 4.76 5.55 -21.31 -0.12 4.64 16 10 C -0.23 -10.99 9.79 22.75 0.22 -10.77 16 11 C -0.08 -3.28 10.01 22.20 0.22 -3.06 16 12 C -0.24 -10.10 7.37 22.59 0.17 -9.93 16 13 C 0.15 6.75 5.86 38.16 0.22 6.98 16 14 N -0.67 -25.95 5.20 -180.68 -0.94 -26.89 16 15 C 0.27 9.02 6.32 38.21 0.24 9.26 16 16 C -0.25 -7.78 8.00 22.45 0.18 -7.60 16 17 C 0.17 4.37 7.30 22.36 0.16 4.54 16 18 F -0.13 -3.48 17.27 44.97 0.78 -2.70 16 19 C -0.20 -3.85 10.02 22.34 0.22 -3.63 16 20 C 0.01 0.19 9.42 22.24 0.21 0.40 16 21 C -0.28 -7.67 5.39 -19.73 -0.11 -7.78 16 22 C 0.52 14.08 2.80 71.24 0.20 14.28 16 23 F -0.17 -3.81 15.97 44.97 0.72 -3.09 16 24 F -0.19 -5.71 16.10 44.97 0.72 -4.98 16 25 F -0.18 -5.56 16.39 44.97 0.74 -4.82 16 26 C -0.19 -9.95 8.58 22.86 0.20 -9.75 16 27 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 28 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.12 4.34 6.63 -2.91 -0.02 4.32 16 31 H 0.41 15.62 6.30 -92.71 -0.58 15.04 16 32 H 0.14 5.10 5.35 -2.91 -0.02 5.09 16 33 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.18 2.28 7.15 -2.91 -0.02 2.26 16 35 H 0.11 6.11 6.14 -2.91 -0.02 6.10 16 Total: -1.00 -57.06 315.19 7.57 -49.48 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.60 Total: 32.91 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.70 Total: -36.66 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -0.71 Total: -70.58 kcal Atomic # 9 Polarization: -18.55 SS G_CDS: 2.96 Total: -15.60 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -57.06 7.57 -49.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174485997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.165 kcal (2) G-P(sol) polarization free energy of solvation -57.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds