Wall clock time and date at job start Tue Mar 31 2020 14:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46826 * 270.00184 * 3 2 1 5 5 H 1.48496 * 109.46945 * 30.00164 * 3 2 1 6 6 H 1.48500 * 109.46858 * 149.99945 * 3 2 1 7 7 C 1.39912 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99796 * 196.94914 * 7 2 1 9 9 C 1.41012 * 119.99874 * 16.94650 * 7 2 1 10 10 C 1.40738 * 120.30970 * 25.50905 * 9 7 2 11 11 C 1.36424 * 119.95275 * 180.02562 * 10 9 7 12 12 C 1.38933 * 120.60625 * 359.97438 * 11 10 9 13 13 C 1.38117 * 120.63302 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.02341 * 0.04628 * 13 12 11 15 15 N 1.38687 * 120.30069 * 179.69814 * 14 13 12 16 16 C 1.39582 * 120.00188 * 253.99424 * 15 14 13 17 17 C 1.38955 * 120.06485 * 5.71177 * 16 15 14 18 18 C 1.38283 * 119.89004 * 180.02562 * 17 16 15 19 19 F 1.35105 * 119.98242 * 180.02562 * 18 17 16 20 20 C 1.38551 * 120.03373 * 359.97286 * 18 17 16 21 21 C 1.38250 * 120.13407 * 0.02627 * 20 18 17 22 22 C 1.38113 * 120.09993 * 359.72018 * 21 20 18 23 23 C 1.50706 * 120.01362 * 180.27280 * 22 21 20 24 24 F 1.39909 * 109.46833 * 0.26157 * 23 22 21 25 25 F 1.39902 * 109.47191 * 120.25688 * 23 22 21 26 26 F 1.39894 * 109.47408 * 240.25879 * 23 22 21 27 27 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.02530 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.70031 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.68524 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.99050 * 180.02562 * 13 12 11 32 32 H 0.97003 * 119.99499 * 73.99717 * 15 14 13 33 33 H 1.07991 * 120.05191 * 359.97438 * 17 16 15 34 34 H 1.07999 * 119.93537 * 180.02562 * 20 18 17 35 35 H 1.07993 * 119.94385 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4404 2.6527 0.7001 6 1 3.5405 1.4403 0.7001 7 6 2.0086 -1.2117 -0.0005 8 1 3.0533 -1.2320 0.2721 9 6 1.3494 -2.4062 -0.3570 10 6 0.2205 -2.3711 -1.1966 11 6 -0.4120 -3.5312 -1.5365 12 6 0.0481 -4.7530 -1.0614 13 6 1.1543 -4.8161 -0.2369 14 6 1.8176 -3.6519 0.1258 15 7 2.9252 -3.7080 0.9585 16 6 2.8196 -3.2994 2.2890 17 6 1.5814 -2.9489 2.8134 18 6 1.4810 -2.5441 4.1318 19 9 0.2780 -2.2034 4.6437 20 6 2.6133 -2.4887 4.9284 21 6 3.8458 -2.8372 4.4079 22 6 3.9516 -3.2473 3.0933 23 6 5.2952 -3.6327 2.5297 24 9 6.2725 -3.5000 3.5220 25 9 5.2534 -4.9604 2.0909 26 9 5.6069 -2.7953 1.4532 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1455 -1.4265 -1.5710 29 1 -1.2777 -3.4996 -2.1814 30 1 -0.4637 -5.6622 -1.3402 31 1 1.5033 -5.7716 0.1261 32 1 3.7733 -4.0313 0.6162 33 1 0.6992 -2.9918 2.1920 34 1 2.5330 -2.1728 5.9580 35 1 4.7263 -2.7934 5.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174486685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:46 Heat of formation + Delta-G solvation = -151.020302 kcal Electronic energy + Delta-G solvation = -28005.998907 eV Core-core repulsion = 23467.777132 eV Total energy + Delta-G solvation = -4538.221775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92036 -48.53210 -47.45993 -47.32657 -39.39997 -37.67835 -34.65117 -33.82802 -31.20715 -29.94439 -29.73885 -27.77130 -25.46696 -25.16179 -22.63986 -21.68241 -21.13053 -20.20034 -18.44782 -18.20772 -18.09756 -17.51661 -17.29983 -16.45220 -15.48053 -15.23008 -15.10968 -14.98857 -14.34012 -14.29321 -14.17635 -14.03154 -13.90215 -13.81640 -13.57774 -13.52319 -13.11042 -12.93583 -12.73484 -12.45263 -12.31751 -11.76172 -11.40213 -11.32552 -11.22073 -11.06705 -10.86030 -10.57592 -10.38750 -9.81971 -9.48357 -9.33763 -8.60364 -7.73310 -7.62126 -7.11796 -6.85213 -4.55029 1.29361 1.78876 2.57471 2.75992 2.97921 3.00233 3.04465 3.11684 3.81146 3.82379 3.93206 4.10828 4.29754 4.46574 4.70350 4.74202 5.08296 5.38796 5.43680 5.71251 5.80972 6.05449 6.13560 6.24749 6.33869 6.42059 6.48876 6.65048 6.87977 6.95260 7.06591 7.16557 7.27117 7.53003 7.72473 7.90240 7.97483 8.08149 8.22347 8.50968 8.66856 8.82092 9.98158 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.006175 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.557831 B = 4533.685789 C = 4925.334834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.154 4.154 11 C -0.099 4.099 12 C -0.239 4.239 13 C -0.078 4.078 14 C -0.026 4.026 15 N -0.643 5.643 16 C 0.316 3.684 17 C -0.197 4.197 18 C 0.168 3.832 19 F -0.137 7.137 20 C -0.231 4.231 21 C -0.006 4.006 22 C -0.297 4.297 23 C 0.516 3.484 24 F -0.183 7.183 25 F -0.183 7.183 26 F -0.177 7.177 27 H 0.284 0.716 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.393 0.607 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -3.278 5.643 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.173 4.173 11 C -0.118 4.118 12 C -0.259 4.259 13 C -0.098 4.098 14 C -0.119 4.119 15 N -0.260 5.260 16 C 0.205 3.795 17 C -0.220 4.220 18 C 0.147 3.853 19 F -0.116 7.116 20 C -0.252 4.252 21 C -0.025 4.025 22 C -0.304 4.304 23 C 0.462 3.538 24 F -0.164 7.164 25 F -0.165 7.165 26 F -0.158 7.158 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.230 0.770 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.137 -3.110 5.500 8.143 hybrid contribution 0.608 0.737 -0.179 0.972 sum 5.745 -2.373 5.320 8.182 Atomic orbital electron populations 1.69826 1.07540 1.29687 1.33424 1.25930 0.94734 1.01477 0.91985 0.86340 0.80826 0.80485 0.79522 1.19096 1.20063 1.18300 1.19476 0.97934 0.90759 1.38759 0.90134 1.17734 0.91206 0.91239 0.88357 1.21030 0.98681 0.97215 1.00407 1.20507 0.98569 0.93256 0.99439 1.20215 1.01159 0.96436 1.08087 1.20687 0.95187 0.95803 0.98121 1.17287 0.96432 0.93770 1.04395 1.41492 1.12054 1.66549 1.05860 1.17201 0.91140 0.86962 0.84162 1.20647 0.98478 1.08519 0.94340 1.17541 0.80314 0.95623 0.91806 1.91489 1.43526 1.89400 1.87153 1.20628 0.91297 1.12343 1.00969 1.20335 0.97483 0.92369 0.92275 1.19292 0.90602 1.22721 0.97791 1.18183 0.85601 0.74407 0.75617 1.93115 1.65766 1.95671 1.61850 1.93182 1.96753 1.36590 1.89958 1.93233 1.94031 1.71567 1.56962 0.90520 0.86135 0.89217 0.89106 0.89000 0.77046 0.83140 0.84915 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 10.97 55.55 0.61 -18.21 16 2 C 0.08 1.86 5.15 -17.32 -0.09 1.77 16 3 Si 0.90 18.23 29.59 -169.99 -5.03 13.20 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.44 -10.78 7.94 -37.90 -0.30 -11.09 16 8 H 0.08 2.00 7.60 -52.49 -0.40 1.60 16 9 C 0.12 2.86 5.00 -106.63 -0.53 2.33 16 10 C -0.15 -3.67 8.63 -39.29 -0.34 -4.01 16 11 C -0.10 -2.15 9.96 -39.98 -0.40 -2.55 16 12 C -0.24 -4.95 10.03 -39.37 -0.40 -5.35 16 13 C -0.08 -1.63 9.96 -39.41 -0.39 -2.02 16 14 C -0.03 -0.56 4.64 -83.28 -0.39 -0.95 16 15 N -0.64 -12.76 4.46 -8.05 -0.04 -12.79 16 16 C 0.32 6.07 5.96 -83.79 -0.50 5.57 16 17 C -0.20 -3.95 8.87 -39.30 -0.35 -4.30 16 18 C 0.17 3.02 7.30 -39.45 -0.29 2.73 16 19 F -0.14 -2.50 17.27 2.25 0.04 -2.46 16 20 C -0.23 -3.50 10.02 -39.46 -0.40 -3.90 16 21 C -0.01 -0.09 9.42 -39.62 -0.37 -0.46 16 22 C -0.30 -5.01 5.39 -104.40 -0.56 -5.57 16 23 C 0.52 8.16 2.80 36.01 0.10 8.26 16 24 F -0.18 -2.63 15.97 2.25 0.04 -2.59 16 25 F -0.18 -2.86 16.14 2.25 0.04 -2.82 16 26 F -0.18 -3.02 16.35 2.25 0.04 -2.98 16 27 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 28 H 0.12 2.98 6.20 -52.49 -0.33 2.66 16 29 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.39 7.28 6.27 -40.82 -0.26 7.03 16 33 H 0.15 3.41 6.71 -52.49 -0.35 3.06 16 34 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.14 1.62 7.15 -52.49 -0.38 1.24 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -24.36 317.61 -7.26 -31.62 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -2.53 Total: 11.78 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -5.20 Total: -19.53 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.57 Total: -31.00 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.15 Total: -10.86 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -24.36 -7.26 -31.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174486685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.400 kcal (2) G-P(sol) polarization free energy of solvation -24.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds