Wall clock time and date at job start Tue Mar 31 2020 14:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46826 * 270.00184 * 3 2 1 5 5 H 1.48496 * 109.46945 * 30.00164 * 3 2 1 6 6 H 1.48500 * 109.46858 * 149.99945 * 3 2 1 7 7 C 1.39912 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99796 * 196.94914 * 7 2 1 9 9 C 1.41012 * 119.99874 * 16.94650 * 7 2 1 10 10 C 1.40738 * 120.30970 * 25.50905 * 9 7 2 11 11 C 1.36424 * 119.95275 * 180.02562 * 10 9 7 12 12 C 1.38933 * 120.60625 * 359.97438 * 11 10 9 13 13 C 1.38117 * 120.63302 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.02341 * 0.04628 * 13 12 11 15 15 N 1.38687 * 120.30069 * 179.69814 * 14 13 12 16 16 C 1.39582 * 120.00188 * 253.99424 * 15 14 13 17 17 C 1.38955 * 120.06485 * 5.71177 * 16 15 14 18 18 C 1.38283 * 119.89004 * 180.02562 * 17 16 15 19 19 F 1.35105 * 119.98242 * 180.02562 * 18 17 16 20 20 C 1.38551 * 120.03373 * 359.97286 * 18 17 16 21 21 C 1.38250 * 120.13407 * 0.02627 * 20 18 17 22 22 C 1.38113 * 120.09993 * 359.72018 * 21 20 18 23 23 C 1.50706 * 120.01362 * 180.27280 * 22 21 20 24 24 F 1.39909 * 109.46833 * 0.26157 * 23 22 21 25 25 F 1.39902 * 109.47191 * 120.25688 * 23 22 21 26 26 F 1.39894 * 109.47408 * 240.25879 * 23 22 21 27 27 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.02530 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.70031 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.68524 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.99050 * 180.02562 * 13 12 11 32 32 H 0.97003 * 119.99499 * 73.99717 * 15 14 13 33 33 H 1.07991 * 120.05191 * 359.97438 * 17 16 15 34 34 H 1.07999 * 119.93537 * 180.02562 * 20 18 17 35 35 H 1.07993 * 119.94385 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4404 2.6527 0.7001 6 1 3.5405 1.4403 0.7001 7 6 2.0086 -1.2117 -0.0005 8 1 3.0533 -1.2320 0.2721 9 6 1.3494 -2.4062 -0.3570 10 6 0.2205 -2.3711 -1.1966 11 6 -0.4120 -3.5312 -1.5365 12 6 0.0481 -4.7530 -1.0614 13 6 1.1543 -4.8161 -0.2369 14 6 1.8176 -3.6519 0.1258 15 7 2.9252 -3.7080 0.9585 16 6 2.8196 -3.2994 2.2890 17 6 1.5814 -2.9489 2.8134 18 6 1.4810 -2.5441 4.1318 19 9 0.2780 -2.2034 4.6437 20 6 2.6133 -2.4887 4.9284 21 6 3.8458 -2.8372 4.4079 22 6 3.9516 -3.2473 3.0933 23 6 5.2952 -3.6327 2.5297 24 9 6.2725 -3.5000 3.5220 25 9 5.2534 -4.9604 2.0909 26 9 5.6069 -2.7953 1.4532 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1455 -1.4265 -1.5710 29 1 -1.2777 -3.4996 -2.1814 30 1 -0.4637 -5.6622 -1.3402 31 1 1.5033 -5.7716 0.1261 32 1 3.7733 -4.0313 0.6162 33 1 0.6992 -2.9918 2.1920 34 1 2.5330 -2.1728 5.9580 35 1 4.7263 -2.7934 5.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174486685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:46 Heat of formation + Delta-G solvation = -159.971928 kcal Electronic energy + Delta-G solvation = -28006.387079 eV Core-core repulsion = 23467.777132 eV Total energy + Delta-G solvation = -4538.609947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.17833 -49.96468 -48.67706 -48.62037 -40.88251 -39.26800 -36.18008 -35.57018 -32.58738 -31.54599 -31.38136 -29.35184 -27.10336 -26.58871 -24.09718 -23.09553 -22.81363 -21.81829 -19.77733 -19.47506 -19.41984 -19.20594 -18.74507 -18.00799 -17.10729 -16.68690 -16.60757 -16.41791 -15.93830 -15.68554 -15.53883 -15.46663 -15.37321 -15.06729 -14.84179 -14.78066 -14.60223 -14.40702 -14.27895 -13.96466 -13.76319 -13.46348 -13.10777 -12.87037 -12.72087 -12.58703 -12.33388 -12.22434 -11.93398 -11.55383 -11.09500 -11.02686 -10.00349 -9.41042 -9.37844 -8.76600 -8.45763 -6.36421 -0.08542 0.43515 0.87907 1.03525 1.34213 1.44737 1.47983 1.69681 2.15656 2.40541 2.50638 2.71059 2.78517 3.03602 3.32644 3.45936 3.64869 3.80855 4.15361 4.30632 4.42456 4.45434 4.57082 4.79811 4.89038 4.96494 5.10341 5.13663 5.23365 5.24645 5.34498 5.50841 5.75060 5.84606 5.99017 6.15190 6.29382 6.38309 6.60575 6.77557 6.88861 7.09596 8.25749 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.006175 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.557831 B = 4533.685789 C = 4925.334834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.044 3.956 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.068 0.932 9 C 0.094 3.906 10 C -0.180 4.180 11 C -0.104 4.104 12 C -0.234 4.234 13 C -0.087 4.087 14 C -0.018 4.018 15 N -0.649 5.649 16 C 0.300 3.700 17 C -0.222 4.222 18 C 0.157 3.843 19 F -0.143 7.143 20 C -0.214 4.214 21 C 0.006 3.994 22 C -0.298 4.298 23 C 0.522 3.478 24 F -0.169 7.169 25 F -0.182 7.182 26 F -0.186 7.186 27 H 0.288 0.712 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.397 0.603 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -3.727 7.248 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.173 4.173 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.087 0.913 9 C 0.091 3.909 10 C -0.200 4.200 11 C -0.122 4.122 12 C -0.254 4.254 13 C -0.107 4.107 14 C -0.112 4.112 15 N -0.268 5.268 16 C 0.191 3.809 17 C -0.246 4.246 18 C 0.137 3.863 19 F -0.121 7.121 20 C -0.234 4.234 21 C -0.012 4.012 22 C -0.305 4.305 23 C 0.468 3.532 24 F -0.150 7.150 25 F -0.163 7.163 26 F -0.167 7.167 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.235 0.765 33 H 0.132 0.868 34 H 0.188 0.812 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.540 -3.569 7.118 10.304 hybrid contribution 0.171 0.736 -0.601 0.966 sum 6.711 -2.833 6.518 9.774 Atomic orbital electron populations 1.69874 1.08556 1.30501 1.34653 1.26561 0.95342 1.03912 0.91483 0.85479 0.79354 0.77165 0.79612 1.18541 1.19244 1.18712 1.19454 0.97461 0.91773 1.40479 0.91349 1.18010 0.91793 0.92256 0.88884 1.21018 0.99767 0.97443 1.01726 1.20772 0.98968 0.92996 0.99471 1.20589 1.00776 0.97116 1.06878 1.21000 0.95199 0.96405 0.98056 1.17429 0.96560 0.93475 1.03705 1.41374 1.11645 1.67615 1.06141 1.17280 0.91695 0.87849 0.84083 1.20435 0.97747 1.11139 0.95229 1.17788 0.81140 0.95857 0.91534 1.91472 1.44131 1.89486 1.87045 1.21023 0.89995 1.10256 1.02147 1.20824 0.98709 0.90128 0.91543 1.19528 0.90293 1.22158 0.98474 1.17997 0.85391 0.74292 0.75543 1.93141 1.65127 1.95605 1.61164 1.93187 1.96747 1.36399 1.89962 1.93221 1.94059 1.71924 1.57523 0.90097 0.87843 0.87090 0.86146 0.86831 0.76519 0.86845 0.81171 0.80622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.67 10.97 21.83 0.24 -40.43 16 2 C 0.04 2.13 5.15 85.24 0.44 2.57 16 3 Si 0.96 38.06 29.59 68.60 2.03 40.09 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.46 -23.55 7.94 23.36 0.19 -23.36 16 8 H 0.07 3.53 7.60 -2.91 -0.02 3.51 16 9 C 0.09 4.74 5.00 -21.17 -0.11 4.63 16 10 C -0.18 -8.91 8.63 22.46 0.19 -8.72 16 11 C -0.10 -4.52 9.96 22.01 0.22 -4.30 16 12 C -0.23 -9.46 10.03 22.41 0.22 -9.24 16 13 C -0.09 -3.60 9.96 22.38 0.22 -3.37 16 14 C -0.02 -0.81 4.64 39.02 0.18 -0.63 16 15 N -0.65 -26.04 4.46 -179.38 -0.80 -26.84 16 16 C 0.30 11.51 5.96 38.25 0.23 11.73 16 17 C -0.22 -9.11 8.87 22.45 0.20 -8.91 16 18 C 0.16 5.55 7.30 22.36 0.16 5.71 16 19 F -0.14 -5.18 17.27 44.97 0.78 -4.41 16 20 C -0.21 -5.78 10.02 22.35 0.22 -5.56 16 21 C 0.01 0.16 9.42 22.24 0.21 0.37 16 22 C -0.30 -9.49 5.39 -19.72 -0.11 -9.60 16 23 C 0.52 15.43 2.80 71.24 0.20 15.63 16 24 F -0.17 -4.30 15.97 44.97 0.72 -3.58 16 25 F -0.18 -5.34 16.14 44.97 0.73 -4.61 16 26 F -0.19 -6.16 16.35 44.97 0.74 -5.42 16 27 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 28 H 0.10 5.40 6.20 -2.91 -0.02 5.38 16 29 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.40 14.79 6.27 -92.71 -0.58 14.20 16 33 H 0.11 5.47 6.71 -2.92 -0.02 5.45 16 34 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.18 3.20 7.15 -2.91 -0.02 3.18 16 Total: -1.00 -54.42 317.61 7.70 -46.72 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.60 Total: 31.51 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.68 Total: -33.03 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.56 Total: -67.27 kcal Atomic # 9 Polarization: -20.97 SS G_CDS: 2.96 Total: -18.02 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -54.42 7.70 -46.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174486685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.253 kcal (2) G-P(sol) polarization free energy of solvation -54.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds