Wall clock time and date at job start Tue Mar 31 2020 14:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46793 * 299.99531 * 3 2 1 6 6 H 1.48496 * 109.47350 * 59.99597 * 3 2 1 7 7 C 1.39934 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99691 * 163.05381 * 7 2 1 9 9 C 1.41408 * 119.99900 * 343.04976 * 7 2 1 10 10 C 1.40792 * 120.20516 * 154.62490 * 9 7 2 11 11 C 1.37653 * 119.89970 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32429 * 359.97438 * 11 10 9 13 13 C 1.39317 * 120.42288 * 0.04735 * 12 11 10 14 14 N 1.39707 * 119.95089 * 180.02562 * 13 12 11 15 15 C 1.39855 * 120.00064 * 329.92543 * 14 13 12 16 16 C 1.38916 * 120.04722 * 150.05636 * 15 14 13 17 17 C 1.38087 * 119.94565 * 180.02562 * 16 15 14 18 18 C 1.38494 * 120.04992 * 0.02562 * 17 16 15 19 19 F 1.35105 * 119.94625 * 179.97438 * 18 17 16 20 20 C 1.38452 * 120.10433 * 359.97438 * 18 17 16 21 21 C 1.50694 * 119.97240 * 179.97438 * 20 18 17 22 22 F 1.39907 * 109.46832 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47651 * 299.99764 * 21 20 18 24 24 F 1.39902 * 109.47316 * 60.00181 * 21 20 18 25 25 C 1.38128 * 120.04966 * 359.72208 * 20 18 17 26 26 C 1.38334 * 120.09025 * 359.95089 * 13 12 11 27 27 H 0.97008 * 119.99865 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05050 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83834 * 180.02562 * 11 10 9 30 30 H 1.07992 * 119.78581 * 180.02562 * 12 11 10 31 31 H 0.96995 * 119.99687 * 149.93025 * 14 13 12 32 32 H 1.07996 * 120.02704 * 0.03212 * 16 15 14 33 33 H 1.08006 * 119.97283 * 180.02562 * 17 16 15 34 34 H 1.07995 * 120.02980 * 180.27972 * 25 20 18 35 35 H 1.08002 * 120.16005 * 180.29551 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0527 -1.2323 -0.2721 9 6 1.3469 -2.4097 0.3581 10 6 1.8155 -3.6477 -0.1215 11 6 1.1668 -4.8098 0.2301 12 6 0.0546 -4.7680 1.0546 13 6 -0.4209 -3.5504 1.5366 14 7 -1.5432 -3.5196 2.3680 15 6 -2.5363 -4.4958 2.2386 16 6 -3.2830 -4.8794 3.3454 17 6 -4.2627 -5.8439 3.2154 18 6 -4.5006 -6.4290 1.9828 19 9 -5.4592 -7.3727 1.8581 20 6 -3.7575 -6.0482 0.8784 21 6 -4.0185 -6.6872 -0.4612 22 9 -3.1507 -6.1433 -1.4143 23 9 -3.8053 -8.0668 -0.3694 24 9 -5.3421 -6.4444 -0.8439 25 6 -2.7808 -5.0794 1.0024 26 6 0.2177 -2.3719 1.1942 27 1 -0.4850 0.8401 -0.0004 28 1 2.6826 -3.6855 -0.7644 29 1 1.5274 -5.7590 -0.1381 30 1 -0.4473 -5.6850 1.3253 31 1 -1.6336 -2.8212 3.0350 32 1 -3.0976 -4.4236 4.3068 33 1 -4.8438 -6.1421 4.0755 34 1 -2.2045 -4.7795 0.1397 35 1 -0.1471 -1.4278 1.5710 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175078439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:06 Heat of formation + Delta-G solvation = -148.902096 kcal Electronic energy + Delta-G solvation = -26872.242114 eV Core-core repulsion = 22334.112191 eV Total energy + Delta-G solvation = -4538.129923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.10059 -48.89635 -47.53391 -47.51834 -39.74407 -37.70255 -35.08390 -33.50918 -32.07852 -29.87397 -29.67504 -27.41309 -26.02602 -25.35137 -22.88976 -22.12439 -21.11581 -20.34233 -18.55365 -18.41764 -18.36392 -17.54160 -17.25580 -16.67108 -15.75250 -15.63000 -15.51784 -14.83763 -14.75830 -14.47358 -14.38235 -14.12673 -13.94326 -13.67063 -13.66342 -13.58940 -13.21955 -13.07208 -12.98806 -12.49047 -12.47955 -12.26327 -11.85841 -11.44003 -11.20070 -11.16636 -10.81357 -10.56102 -10.25330 -9.89900 -9.67638 -9.37417 -9.27192 -8.22634 -7.54058 -6.90355 -6.60399 -4.50195 0.81522 1.16337 2.65505 2.68829 2.86351 3.01435 3.06033 3.10660 3.46734 3.65577 3.76869 3.85128 4.01814 4.25915 4.46754 4.51689 4.71817 5.01138 5.20860 5.45316 5.54958 5.65144 5.95580 6.00129 6.08698 6.21587 6.34713 6.51963 6.69324 6.91134 6.93406 7.10647 7.14511 7.52375 7.67834 7.81035 7.92731 8.18447 8.21686 8.53859 8.77671 8.82551 10.07517 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.003416 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.616692 B = 8194.895884 C = 8561.414674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.129 3.871 10 C -0.236 4.236 11 C -0.071 4.071 12 C -0.273 4.273 13 C 0.166 3.834 14 N -0.677 5.677 15 C 0.204 3.796 16 C -0.131 4.131 17 C -0.116 4.116 18 C 0.086 3.914 19 F -0.136 7.136 20 C -0.184 4.184 21 C 0.512 3.488 22 F -0.169 7.169 23 F -0.175 7.175 24 F -0.176 7.176 25 C -0.091 4.091 26 C -0.194 4.194 27 H 0.280 0.720 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.406 0.594 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -7.042 5.125 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.126 3.874 10 C -0.256 4.256 11 C -0.090 4.090 12 C -0.294 4.294 13 C 0.072 3.928 14 N -0.298 5.298 15 C 0.101 3.899 16 C -0.153 4.153 17 C -0.135 4.135 18 C 0.065 3.935 19 F -0.114 7.114 20 C -0.187 4.187 21 C 0.458 3.542 22 F -0.150 7.150 23 F -0.157 7.157 24 F -0.157 7.157 25 C -0.113 4.113 26 C -0.216 4.216 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.242 0.758 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.130 -6.956 4.966 11.795 hybrid contribution 0.044 0.787 -0.066 0.791 sum -8.086 -6.168 4.900 11.289 Atomic orbital electron populations 1.69832 1.07559 1.29170 1.35053 1.25914 0.94736 1.01358 0.92142 0.86275 0.81061 0.80907 0.78608 1.18328 1.19933 1.19722 1.19625 0.97919 0.90998 1.40451 0.90170 1.17385 0.90132 0.92166 0.87717 1.21018 1.04216 0.92859 1.07469 1.20361 0.94973 0.96701 0.96978 1.20132 1.03217 0.94434 1.11620 1.17593 0.86969 0.94514 0.93735 1.42187 1.18863 1.29064 1.39709 1.17667 0.89454 0.90715 0.92040 1.20856 0.97964 0.98599 0.97879 1.20787 0.99460 0.97575 0.95726 1.17004 0.90526 0.92063 0.93953 1.91510 1.61109 1.62156 1.96639 1.19788 1.03129 1.03909 0.91865 1.18068 0.74288 0.76452 0.85394 1.93222 1.69645 1.85527 1.66605 1.93212 1.94546 1.31483 1.96427 1.93212 1.36038 1.94092 1.92393 1.20887 0.96156 0.95694 0.98521 1.20984 1.01849 0.94870 1.03912 0.90889 0.88792 0.88961 0.89105 0.75829 0.84322 0.83912 0.82527 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.36 10.97 55.55 0.61 -18.75 16 2 C 0.08 1.82 5.15 -17.34 -0.09 1.73 16 3 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.13 3.24 5.57 -106.85 -0.59 2.64 16 10 C -0.24 -5.49 9.79 -38.83 -0.38 -5.87 16 11 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 12 C -0.27 -5.67 7.93 -39.08 -0.31 -5.98 16 13 C 0.17 3.46 5.91 -83.83 -0.50 2.97 16 14 N -0.68 -11.41 5.46 -8.44 -0.05 -11.46 16 15 C 0.20 3.12 5.92 -83.71 -0.50 2.62 16 16 C -0.13 -1.57 9.95 -39.39 -0.39 -1.96 16 17 C -0.12 -1.34 10.02 -39.54 -0.40 -1.73 16 18 C 0.09 1.19 7.13 -39.41 -0.28 0.91 16 19 F -0.14 -1.91 16.45 2.25 0.04 -1.87 16 20 C -0.18 -2.80 5.37 -104.59 -0.56 -3.37 16 21 C 0.51 7.88 3.02 36.00 0.11 7.99 16 22 F -0.17 -2.75 15.97 2.25 0.04 -2.71 16 23 F -0.18 -2.67 17.05 2.25 0.04 -2.63 16 24 F -0.18 -2.68 17.05 2.25 0.04 -2.64 16 25 C -0.09 -1.49 7.29 -39.38 -0.29 -1.77 16 26 C -0.19 -4.60 8.58 -38.67 -0.33 -4.93 16 27 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 28 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.77 6.60 -52.49 -0.35 1.43 16 31 H 0.41 5.95 8.90 -40.82 -0.36 5.59 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.16 2.89 5.73 -52.49 -0.30 2.59 16 35 H 0.12 2.96 6.20 -52.49 -0.33 2.64 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -25.89 320.41 -7.31 -33.20 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.58 Total: 9.89 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -5.25 Total: -20.59 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.56 Total: -30.21 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.15 Total: -9.86 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.89 -7.31 -33.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175078439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.706 kcal (2) G-P(sol) polarization free energy of solvation -25.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds