Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46793 * 299.99531 * 3 2 1 6 6 H 1.48496 * 109.47350 * 59.99597 * 3 2 1 7 7 C 1.39934 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99691 * 163.05381 * 7 2 1 9 9 C 1.41408 * 119.99900 * 343.04976 * 7 2 1 10 10 C 1.40792 * 120.20516 * 154.62490 * 9 7 2 11 11 C 1.37653 * 119.89970 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32429 * 359.97438 * 11 10 9 13 13 C 1.39317 * 120.42288 * 0.04735 * 12 11 10 14 14 N 1.39707 * 119.95089 * 180.02562 * 13 12 11 15 15 C 1.39855 * 120.00064 * 329.92543 * 14 13 12 16 16 C 1.38916 * 120.04722 * 150.05636 * 15 14 13 17 17 C 1.38087 * 119.94565 * 180.02562 * 16 15 14 18 18 C 1.38494 * 120.04992 * 0.02562 * 17 16 15 19 19 F 1.35105 * 119.94625 * 179.97438 * 18 17 16 20 20 C 1.38452 * 120.10433 * 359.97438 * 18 17 16 21 21 C 1.50694 * 119.97240 * 179.97438 * 20 18 17 22 22 F 1.39907 * 109.46832 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.47651 * 299.99764 * 21 20 18 24 24 F 1.39902 * 109.47316 * 60.00181 * 21 20 18 25 25 C 1.38128 * 120.04966 * 359.72208 * 20 18 17 26 26 C 1.38334 * 120.09025 * 359.95089 * 13 12 11 27 27 H 0.97008 * 119.99865 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05050 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83834 * 180.02562 * 11 10 9 30 30 H 1.07992 * 119.78581 * 180.02562 * 12 11 10 31 31 H 0.96995 * 119.99687 * 149.93025 * 14 13 12 32 32 H 1.07996 * 120.02704 * 0.03212 * 16 15 14 33 33 H 1.08006 * 119.97283 * 180.02562 * 17 16 15 34 34 H 1.07995 * 120.02980 * 180.27972 * 25 20 18 35 35 H 1.08002 * 120.16005 * 180.29551 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0527 -1.2323 -0.2721 9 6 1.3469 -2.4097 0.3581 10 6 1.8155 -3.6477 -0.1215 11 6 1.1668 -4.8098 0.2301 12 6 0.0546 -4.7680 1.0546 13 6 -0.4209 -3.5504 1.5366 14 7 -1.5432 -3.5196 2.3680 15 6 -2.5363 -4.4958 2.2386 16 6 -3.2830 -4.8794 3.3454 17 6 -4.2627 -5.8439 3.2154 18 6 -4.5006 -6.4290 1.9828 19 9 -5.4592 -7.3727 1.8581 20 6 -3.7575 -6.0482 0.8784 21 6 -4.0185 -6.6872 -0.4612 22 9 -3.1507 -6.1433 -1.4143 23 9 -3.8053 -8.0668 -0.3694 24 9 -5.3421 -6.4444 -0.8439 25 6 -2.7808 -5.0794 1.0024 26 6 0.2177 -2.3719 1.1942 27 1 -0.4850 0.8401 -0.0004 28 1 2.6826 -3.6855 -0.7644 29 1 1.5274 -5.7590 -0.1381 30 1 -0.4473 -5.6850 1.3253 31 1 -1.6336 -2.8212 3.0350 32 1 -3.0976 -4.4236 4.3068 33 1 -4.8438 -6.1421 4.0755 34 1 -2.2045 -4.7795 0.1397 35 1 -0.1471 -1.4278 1.5710 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175078439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -159.825696 kcal Electronic energy + Delta-G solvation = -26872.715796 eV Core-core repulsion = 22334.112191 eV Total energy + Delta-G solvation = -4538.603606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.33521 -50.01643 -48.77685 -48.76082 -41.00122 -39.25610 -36.55598 -35.20775 -33.20712 -31.46695 -31.22761 -28.86259 -27.33985 -27.00645 -24.08396 -23.44281 -22.72440 -21.90886 -19.86044 -19.65270 -19.60909 -19.08812 -18.46949 -18.01787 -17.24729 -16.82659 -16.74252 -16.47185 -16.34485 -15.69559 -15.61839 -15.26729 -15.19204 -15.16881 -14.92142 -14.87720 -14.68377 -14.44364 -14.14084 -14.08644 -13.75388 -13.57986 -13.47483 -13.01369 -12.77496 -12.56284 -12.31568 -12.13971 -11.76142 -11.64939 -11.32971 -10.97392 -10.43494 -9.65254 -9.33013 -8.65460 -8.10561 -6.36958 -0.29832 0.03567 0.98934 1.15579 1.40196 1.48333 1.51164 1.54649 2.21713 2.30146 2.38810 2.54488 2.75653 2.84426 3.11725 3.25358 3.67272 3.74263 3.99705 4.08206 4.32089 4.48576 4.60106 4.65389 4.81372 4.90969 4.97868 5.06682 5.15204 5.20254 5.33399 5.46954 5.57281 5.87269 5.99925 6.10117 6.13220 6.46948 6.78631 6.80696 6.96055 7.05319 8.33243 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.003416 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.616692 B = 8194.895884 C = 8561.414674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.040 3.960 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.101 3.899 10 C -0.260 4.260 11 C -0.072 4.072 12 C -0.270 4.270 13 C 0.181 3.819 14 N -0.676 5.676 15 C 0.184 3.816 16 C -0.104 4.104 17 C -0.099 4.099 18 C 0.087 3.913 19 F -0.136 7.136 20 C -0.194 4.194 21 C 0.511 3.489 22 F -0.178 7.178 23 F -0.175 7.175 24 F -0.176 7.176 25 C -0.109 4.109 26 C -0.218 4.218 27 H 0.287 0.713 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.416 0.584 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.128 0.872 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 -7.590 7.247 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.098 3.902 10 C -0.280 4.280 11 C -0.091 4.091 12 C -0.292 4.292 13 C 0.085 3.915 14 N -0.299 5.299 15 C 0.083 3.917 16 C -0.126 4.126 17 C -0.118 4.118 18 C 0.066 3.934 19 F -0.114 7.114 20 C -0.197 4.197 21 C 0.456 3.544 22 F -0.160 7.160 23 F -0.156 7.156 24 F -0.157 7.157 25 C -0.131 4.131 26 C -0.241 4.241 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.254 0.746 32 H 0.194 0.806 33 H 0.203 0.797 34 H 0.146 0.854 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.497 -7.536 7.104 14.052 hybrid contribution 0.280 0.751 -0.683 1.053 sum -9.217 -6.785 6.421 13.123 Atomic orbital electron populations 1.69884 1.08828 1.30346 1.35688 1.26672 0.95449 1.04230 0.91197 0.85213 0.79477 0.76474 0.78891 1.18311 1.19386 1.18733 1.19846 0.98026 0.92345 1.42576 0.90725 1.17748 0.91101 0.92935 0.88451 1.21156 1.05038 0.93247 1.08528 1.20679 0.94745 0.97186 0.96443 1.20360 1.02807 0.95035 1.10956 1.17567 0.87436 0.93559 0.92906 1.42018 1.18301 1.30206 1.39409 1.17866 0.90031 0.90950 0.92805 1.21234 0.95915 0.97306 0.98114 1.21236 0.98710 0.95977 0.95860 1.17269 0.89976 0.91820 0.94382 1.91518 1.61033 1.62183 1.96695 1.19753 1.03634 1.04180 0.92123 1.18177 0.74119 0.76474 0.85588 1.93203 1.69996 1.85695 1.67078 1.93208 1.94544 1.31453 1.96424 1.93207 1.35981 1.94101 1.92444 1.20654 0.97037 0.97065 0.98301 1.20908 1.02661 0.95373 1.05145 0.90234 0.88642 0.86342 0.87506 0.74631 0.80636 0.79735 0.85408 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.42 10.97 21.82 0.24 -41.18 16 2 C 0.04 1.94 5.15 85.25 0.44 2.38 16 3 Si 0.98 37.03 29.59 68.60 2.03 39.06 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.50 -26.19 9.05 23.46 0.21 -25.98 16 8 H 0.07 3.82 7.90 -2.92 -0.02 3.80 16 9 C 0.10 5.26 5.57 -21.31 -0.12 5.14 16 10 C -0.26 -12.50 9.79 22.76 0.22 -12.28 16 11 C -0.07 -3.08 10.02 22.20 0.22 -2.86 16 12 C -0.27 -11.17 7.93 22.60 0.18 -10.99 16 13 C 0.18 7.61 5.91 38.17 0.23 7.83 16 14 N -0.68 -22.05 5.46 -180.60 -0.99 -23.04 16 15 C 0.18 5.24 5.92 38.18 0.23 5.46 16 16 C -0.10 -2.04 9.95 22.40 0.22 -1.81 16 17 C -0.10 -1.79 10.02 22.29 0.22 -1.57 16 18 C 0.09 2.13 7.13 22.38 0.16 2.29 16 19 F -0.14 -3.42 16.45 44.97 0.74 -2.68 16 20 C -0.19 -5.65 5.37 -19.84 -0.11 -5.76 16 21 C 0.51 15.48 3.02 71.23 0.22 15.69 16 22 F -0.18 -5.92 15.97 44.97 0.72 -5.20 16 23 F -0.17 -5.19 17.05 44.97 0.77 -4.42 16 24 F -0.18 -5.24 17.05 44.97 0.77 -4.47 16 25 C -0.11 -3.47 7.29 22.40 0.16 -3.31 16 26 C -0.22 -10.71 8.58 22.86 0.20 -10.51 16 27 H 0.29 13.07 8.30 -92.70 -0.77 12.30 16 28 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.11 4.05 6.60 -2.91 -0.02 4.03 16 31 H 0.42 11.64 8.90 -92.71 -0.83 10.81 16 32 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 4.83 5.73 -2.91 -0.02 4.82 16 35 H 0.11 5.51 6.20 -2.91 -0.02 5.49 16 Total: -1.00 -58.39 320.41 7.31 -51.08 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.36 Total: 27.11 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 2.68 Total: -36.27 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.75 Total: -64.21 kcal Atomic # 9 Polarization: -19.76 SS G_CDS: 2.99 Total: -16.77 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -58.39 7.31 -51.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175078439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.744 kcal (2) G-P(sol) polarization free energy of solvation -58.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds