Wall clock time and date at job start Tue Mar 31 2020 14:39:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30829 * 1
3 3 Si 1.86799 * 120.00248 * 2 1
4 4 H 1.48508 * 109.46885 * 270.00079 * 3 2 1
5 5 H 1.48500 * 109.47099 * 29.99739 * 3 2 1
6 6 H 1.48500 * 109.47430 * 150.00174 * 3 2 1
7 7 C 1.39936 * 119.99965 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99898 * 189.47689 * 7 2 1
9 9 C 1.41409 * 120.00094 * 9.47963 * 7 2 1
10 10 C 1.40785 * 120.20699 * 209.32852 * 9 7 2
11 11 C 1.37658 * 119.89428 * 180.02562 * 10 9 7
12 12 C 1.38509 * 120.33126 * 0.02562 * 11 10 9
13 13 C 1.39319 * 120.41737 * 359.97438 * 12 11 10
14 14 N 1.39711 * 119.94784 * 180.27894 * 13 12 11
15 15 C 1.39854 * 120.00164 * 317.53069 * 14 13 12
16 16 C 1.38908 * 120.05158 * 352.19006 * 15 14 13
17 17 C 1.38084 * 119.95076 * 179.97438 * 16 15 14
18 18 C 1.38501 * 120.05028 * 0.02562 * 17 16 15
19 19 F 1.35103 * 119.94689 * 179.97438 * 18 17 16
20 20 C 1.38444 * 120.09973 * 359.96371 * 18 17 16
21 21 C 1.38138 * 120.05140 * 359.77846 * 20 18 17
22 22 C 1.50697 * 120.02554 * 180.23666 * 21 20 18
23 23 F 1.39902 * 109.47072 * 0.25956 * 22 21 20
24 24 F 1.39900 * 109.46909 * 120.25421 * 22 21 20
25 25 F 1.39902 * 109.47457 * 240.25572 * 22 21 20
26 26 C 1.38332 * 120.09445 * 0.02562 * 13 12 11
27 27 H 0.97000 * 120.00009 * 359.97438 * 1 2 3
28 28 H 1.07995 * 120.05717 * 359.97438 * 10 9 7
29 29 H 1.07997 * 119.83343 * 179.97438 * 11 10 9
30 30 H 1.08001 * 119.79116 * 180.02562 * 12 11 10
31 31 H 0.97004 * 120.00020 * 137.53437 * 14 13 12
32 32 H 1.08004 * 120.02411 * 0.02562 * 16 15 14
33 33 H 1.08001 * 119.97860 * 180.02562 * 17 16 15
34 34 H 1.08004 * 119.97639 * 180.02562 * 20 18 17
35 35 H 1.08008 * 120.16137 * 179.97438 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6177 0.0000
4 1 2.4898 2.0463 -1.4002
5 1 1.4398 2.6527 0.7000
6 1 3.5399 1.4401 0.7000
7 6 2.0080 -1.2119 0.0005
8 1 3.0769 -1.2182 0.1545
9 6 1.3154 -2.4283 -0.2006
10 6 1.7959 -3.6203 0.3741
11 6 1.1169 -4.8009 0.1736
12 6 -0.0374 -4.8227 -0.5916
13 6 -0.5248 -3.6510 -1.1665
14 7 -1.6933 -3.6832 -1.9318
15 6 -1.9042 -4.7233 -2.8427
16 6 -0.8884 -5.6332 -3.1070
17 6 -1.0991 -6.6596 -4.0063
18 6 -2.3219 -6.7819 -4.6451
19 9 -2.5256 -7.7867 -5.5250
20 6 -3.3358 -5.8764 -4.3830
21 6 -3.1313 -4.8512 -3.4801
22 6 -4.2372 -3.8690 -3.1913
23 9 -5.3662 -4.2024 -3.9472
24 9 -4.5573 -3.9142 -1.8302
25 9 -3.8147 -2.5786 -3.5284
26 6 0.1436 -2.4549 -0.9764
27 1 -0.4850 0.8400 0.0004
28 1 2.6961 -3.6088 0.9705
29 1 1.4865 -5.7148 0.6146
30 1 -0.5635 -5.7538 -0.7428
31 1 -2.3583 -2.9842 -1.8313
32 1 0.0652 -5.5383 -2.6088
33 1 -0.3098 -7.3675 -4.2119
34 1 -4.2887 -5.9740 -4.8820
35 1 -0.2330 -1.5460 -1.4220
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001175103086.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:39:08
Heat of formation + Delta-G solvation = -159.252402 kcal
Electronic energy + Delta-G solvation = -27019.531670 eV
Core-core repulsion = 22480.952924 eV
Total energy + Delta-G solvation = -4538.578746 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.078 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-51.31228 -49.78805 -48.81042 -48.75949 -41.11518 -39.28285 -36.56157 -35.20725
-33.22580 -31.47592 -31.24211 -28.98292 -27.34301 -27.00307 -24.12107 -23.39157
-22.66320 -21.93679 -19.86283 -19.72188 -19.60876 -19.29529 -18.27606 -17.76202
-17.27623 -16.96448 -16.57493 -16.49756 -16.32025 -15.70281 -15.65798 -15.42797
-15.20199 -15.17855 -14.91145 -14.88966 -14.65470 -14.37942 -14.08515 -13.99093
-13.98258 -13.49785 -13.43622 -12.93203 -12.84509 -12.65855 -12.28077 -12.14987
-11.73929 -11.61979 -11.29359 -11.08384 -10.43099 -9.57949 -9.29926 -8.66583
-8.25329 -6.40575 -0.21365 0.09713 0.93972 1.09953 1.38839 1.49516
1.51961 1.53329 2.17378 2.20673 2.31663 2.59948 2.74583 2.85038
3.29374 3.37380 3.62514 3.70089 3.90842 4.16099 4.20757 4.47675
4.57547 4.64185 4.88690 4.89822 4.95170 5.11660 5.13151 5.19531
5.31216 5.40093 5.64213 5.83749 5.95967 6.04497 6.10249 6.42512
6.49115 6.73915 6.94139 6.98854 8.35134
Molecular weight = 325.08amu
Principal moments of inertia in cm(-1)
A = 0.014901 B = 0.003966 C = 0.003410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1878.591092 B = 7058.211275 C = 8208.586443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.834 5.834
2 C 0.033 3.967
3 Si 0.981 3.019
4 H -0.265 1.265
5 H -0.271 1.271
6 H -0.257 1.257
7 C -0.497 4.497
8 H 0.078 0.922
9 C 0.094 3.906
10 C -0.241 4.241
11 C -0.074 4.074
12 C -0.247 4.247
13 C 0.156 3.844
14 N -0.673 5.673
15 C 0.243 3.757
16 C -0.168 4.168
17 C -0.062 4.062
18 C 0.033 3.967
19 F -0.139 7.139
20 C -0.059 4.059
21 C -0.250 4.250
22 C 0.516 3.484
23 F -0.169 7.169
24 F -0.181 7.181
25 F -0.184 7.184
26 C -0.199 4.199
27 H 0.285 0.715
28 H 0.102 0.898
29 H 0.131 0.869
30 H 0.121 0.879
31 H 0.402 0.598
32 H 0.153 0.847
33 H 0.171 0.829
34 H 0.165 0.835
35 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.758 -9.250 -7.571 13.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.460 5.460
2 C -0.180 4.180
3 Si 0.802 3.198
4 H -0.190 1.190
5 H -0.196 1.196
6 H -0.181 1.181
7 C -0.527 4.527
8 H 0.096 0.904
9 C 0.092 3.908
10 C -0.261 4.261
11 C -0.092 4.092
12 C -0.268 4.268
13 C 0.063 3.937
14 N -0.292 5.292
15 C 0.137 3.863
16 C -0.189 4.189
17 C -0.081 4.081
18 C 0.012 3.988
19 F -0.118 7.118
20 C -0.078 4.078
21 C -0.257 4.257
22 C 0.462 3.538
23 F -0.150 7.150
24 F -0.163 7.163
25 F -0.165 7.165
26 C -0.221 4.221
27 H 0.095 0.905
28 H 0.121 0.879
29 H 0.149 0.851
30 H 0.139 0.861
31 H 0.239 0.761
32 H 0.171 0.829
33 H 0.189 0.811
34 H 0.183 0.817
35 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -5.870 -9.096 -7.490 13.165
hybrid contribution -0.363 1.455 0.186 1.512
sum -6.233 -7.641 -7.305 12.272
Atomic orbital electron populations
1.69843 1.08786 1.30150 1.37254 1.26694 0.95574 1.04345 0.91412
0.85205 0.79073 0.76149 0.79325 1.18954 1.19615 1.18057 1.19850
0.95955 0.91453 1.45435 0.90373 1.17772 0.91508 0.93286 0.88277
1.21292 1.03857 0.93686 1.07235 1.20770 0.94495 0.97236 0.96748
1.20595 1.01744 0.96517 1.07963 1.17613 0.87172 0.94855 0.94102
1.42451 1.20945 1.26012 1.39838 1.17805 0.92368 0.88552 0.87531
1.21119 0.99665 0.95967 1.02177 1.21381 0.96325 0.97435 0.92966
1.17217 0.95538 0.90052 0.96018 1.91492 1.95534 1.58142 1.66626
1.20738 1.00356 0.91427 0.95254 1.19121 0.93280 1.03050 1.10221
1.18114 0.81802 0.79794 0.74134 1.93155 1.53752 1.92163 1.75971
1.93226 1.93521 1.96394 1.33127 1.93217 1.89905 1.41281 1.92121
1.21164 0.99591 0.96061 1.05253 0.90478 0.87948 0.85085 0.86093
0.76114 0.82940 0.81127 0.81713 0.87924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -42.97 10.81 21.82 0.24 -42.74 16
2 C 0.03 1.64 5.27 85.25 0.45 2.09 16
3 Si 0.98 37.80 29.57 68.60 2.03 39.83 16
4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16
5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16
6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16
7 C -0.50 -25.86 9.06 23.46 0.21 -25.65 16
8 H 0.08 3.91 7.86 -2.91 -0.02 3.88 16
9 C 0.09 4.84 5.55 -21.31 -0.12 4.73 16
10 C -0.24 -10.89 9.79 22.76 0.22 -10.67 16
11 C -0.07 -2.87 10.01 22.20 0.22 -2.65 16
12 C -0.25 -9.53 7.40 22.59 0.17 -9.37 16
13 C 0.16 6.67 5.83 38.17 0.22 6.89 16
14 N -0.67 -25.11 5.19 -180.61 -0.94 -26.05 16
15 C 0.24 7.66 6.31 38.17 0.24 7.90 16
16 C -0.17 -4.70 8.05 22.39 0.18 -4.52 16
17 C -0.06 -1.37 10.02 22.30 0.22 -1.15 16
18 C 0.03 0.75 7.30 22.38 0.16 0.91 16
19 F -0.14 -3.10 17.27 44.97 0.78 -2.32 16
20 C -0.06 -1.37 9.40 22.29 0.21 -1.16 16
21 C -0.25 -6.96 5.39 -19.74 -0.11 -7.06 16
22 C 0.52 14.54 2.80 71.24 0.20 14.74 16
23 F -0.17 -4.21 15.97 44.97 0.72 -3.49 16
24 F -0.18 -5.51 16.41 44.97 0.74 -4.78 16
25 F -0.18 -5.67 16.10 44.97 0.72 -4.94 16
26 C -0.20 -9.94 8.57 22.86 0.20 -9.74 16
27 H 0.28 13.46 8.30 -92.71 -0.77 12.69 16
28 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16
29 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16
30 H 0.12 4.08 6.71 -2.91 -0.02 4.06 16
31 H 0.40 15.19 6.31 -92.71 -0.58 14.61 16
32 H 0.15 4.57 5.42 -2.91 -0.02 4.56 16
33 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16
34 H 0.17 3.12 7.15 -2.91 -0.02 3.10 16
35 H 0.10 5.54 6.22 -2.91 -0.02 5.52 16
Total: -1.00 -54.68 315.54 7.57 -47.11
By element:
Atomic # 1 Polarization: 31.47 SS G_CDS: 0.60 Total: 32.07 kcal
Atomic # 6 Polarization: -37.38 SS G_CDS: 2.69 Total: -34.69 kcal
Atomic # 7 Polarization: -68.09 SS G_CDS: -0.70 Total: -68.79 kcal
Atomic # 9 Polarization: -18.49 SS G_CDS: 2.96 Total: -15.53 kcal
Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal
Total: -54.68 7.57 -47.11 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001175103086.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -112.141 kcal
(2) G-P(sol) polarization free energy of solvation -54.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds