Wall clock time and date at job start Tue Mar 31 2020 13:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00199 * 2 1 4 4 O 1.20828 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99984 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.34439 * 60.67665 * 5 3 2 7 7 C 1.54343 * 110.30212 * 182.79843 * 5 3 2 8 8 C 1.54331 * 102.39836 * 92.54097 * 7 5 3 9 9 C 1.51386 * 105.17381 * 26.37946 * 8 7 5 10 10 C 1.38377 * 130.32786 * 162.79238 * 9 8 7 11 11 C 1.38776 * 120.16145 * 180.02562 * 10 9 8 12 12 N 1.39674 * 120.11347 * 180.02562 * 11 10 9 13 13 S 1.65602 * 119.99643 * 133.87134 * 12 11 10 14 14 O 1.42098 * 106.39911 * 184.91148 * 13 12 11 15 15 O 1.42097 * 106.40205 * 51.99353 * 13 12 11 16 16 C 1.76202 * 107.21788 * 298.45028 * 13 12 11 17 17 H 1.08002 * 119.99956 * 11.54144 * 16 13 12 18 18 C 1.37874 * 119.99765 * 191.53804 * 16 13 12 19 19 N 1.31513 * 119.99776 * 180.02562 * 18 16 13 20 20 Si 1.86803 * 120.00109 * 0.02562 * 18 16 13 21 21 H 1.48496 * 109.46861 * 90.00168 * 20 18 16 22 22 H 1.48499 * 109.47042 * 209.99783 * 20 18 16 23 23 H 1.48496 * 109.47098 * 329.99820 * 20 18 16 24 24 C 1.38930 * 119.77334 * 0.28290 * 11 10 9 25 25 C 1.37966 * 119.85652 * 359.44337 * 24 11 10 26 26 C 1.38284 * 109.74992 * 342.79897 * 9 8 7 27 27 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46836 * 299.99885 * 1 2 3 29 29 H 1.09002 * 109.47140 * 59.99684 * 1 2 3 30 30 H 1.09001 * 110.81859 * 210.77216 * 7 5 3 31 31 H 1.09000 * 110.81394 * 334.31384 * 7 5 3 32 32 H 1.08994 * 110.30820 * 267.45641 * 8 7 5 33 33 H 1.09003 * 110.30281 * 145.29794 * 8 7 5 34 34 H 1.08005 * 119.91840 * 359.97438 * 10 9 8 35 35 H 0.96994 * 119.99942 * 313.87313 * 12 11 10 36 36 H 0.97000 * 119.99987 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.07315 * 179.69898 * 24 11 10 38 38 H 1.07997 * 119.83979 * 180.25358 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9713 0.7946 -0.8902 7 6 4.0255 2.7467 0.0711 8 6 4.1911 2.9697 1.5892 9 6 4.4850 1.5993 2.1614 10 6 5.0234 1.2355 3.3831 11 6 5.2043 -0.1048 3.6940 12 7 5.7474 -0.4709 4.9277 13 16 5.0455 -1.6801 5.8152 14 8 5.7495 -1.7331 7.0484 15 8 4.9190 -2.7956 4.9440 16 6 3.4064 -1.1607 6.1999 17 1 2.9843 -0.2967 5.7081 18 6 2.6627 -1.8571 7.1287 19 7 1.4391 -1.4697 7.4155 20 14 3.3931 -3.3510 7.9798 21 1 4.0854 -2.9237 9.2220 22 1 2.3082 -4.3059 8.3213 23 1 4.3660 -4.0111 7.0727 24 6 4.8484 -1.0811 2.7718 25 6 4.3067 -0.7138 1.5573 26 6 4.1260 0.6249 1.2482 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.9754 2.8814 -0.4462 31 1 3.2632 3.4102 -0.3371 32 1 3.2706 3.3681 2.0157 33 1 5.0229 3.6468 1.7835 34 1 5.3042 1.9966 4.0961 35 1 6.5355 -0.0169 5.2645 36 1 0.9157 -1.9599 8.0687 37 1 4.9917 -2.1255 3.0068 38 1 4.0264 -1.4731 0.8423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192986368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:52 Heat of formation + Delta-G solvation = -162.972748 kcal Electronic energy + Delta-G solvation = -25670.227113 eV Core-core repulsion = 21796.414943 eV Total energy + Delta-G solvation = -3873.812170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05421 -40.66791 -38.23819 -37.74341 -37.19881 -36.64113 -35.25570 -34.47779 -32.41639 -29.60042 -28.95938 -28.61152 -27.82456 -24.00768 -23.45045 -22.30182 -21.10513 -21.01214 -19.53428 -18.92454 -18.75102 -18.28894 -17.79513 -17.63821 -17.18897 -16.64104 -16.09849 -15.96166 -15.52568 -15.47806 -15.01880 -14.70586 -14.43543 -14.30542 -14.15245 -13.90855 -13.69958 -13.45668 -13.17347 -13.10649 -12.89209 -12.79402 -12.71903 -12.34738 -12.21020 -12.16281 -11.95356 -11.92448 -11.79389 -11.61369 -11.41097 -11.36397 -11.02849 -9.72401 -9.18745 -9.00478 -7.58885 -0.18347 0.32145 0.41479 1.04035 1.10294 1.14694 1.19194 1.79483 1.85106 2.29090 2.41818 2.71346 3.11190 3.37992 3.45531 3.80436 3.89085 4.02542 4.09781 4.18859 4.27166 4.30623 4.34391 4.37163 4.48204 4.66252 4.69568 4.78180 4.90707 5.00550 5.07323 5.20259 5.24754 5.31277 5.36849 5.40919 5.52585 5.58333 5.90114 5.97294 6.22744 6.47129 6.68112 8.17434 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004252 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.288166 B = 6583.032558 C = 7399.766758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.469 3.531 4 O -0.531 6.531 5 C -0.035 4.035 6 H 0.152 0.848 7 C -0.099 4.099 8 C -0.083 4.083 9 C -0.075 4.075 10 C -0.135 4.135 11 C 0.156 3.844 12 N -1.050 6.050 13 S 2.695 3.305 14 O -1.018 7.018 15 O -1.012 7.012 16 C -1.032 5.032 17 H 0.100 0.900 18 C 0.107 3.893 19 N -0.850 5.850 20 Si 0.854 3.146 21 H -0.237 1.237 22 H -0.225 1.225 23 H -0.248 1.248 24 C -0.174 4.174 25 C -0.065 4.065 26 C -0.125 4.125 27 H 0.125 0.875 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.431 0.569 36 H 0.293 0.707 37 H 0.141 0.859 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 6.628 -16.642 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.313 3.687 4 O -0.420 6.420 5 C -0.054 4.054 6 H 0.169 0.831 7 C -0.136 4.136 8 C -0.120 4.120 9 C -0.076 4.076 10 C -0.156 4.156 11 C 0.060 3.940 12 N -0.801 5.801 13 S 2.796 3.204 14 O -1.009 7.009 15 O -1.002 7.002 16 C -1.165 5.165 17 H 0.118 0.882 18 C -0.110 4.110 19 N -0.480 5.480 20 Si 0.673 3.327 21 H -0.161 1.161 22 H -0.147 1.147 23 H -0.172 1.172 24 C -0.196 4.196 25 C -0.083 4.083 26 C -0.126 4.126 27 H 0.143 0.857 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.269 0.731 36 H 0.104 0.896 37 H 0.159 0.841 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.250 5.982 -16.288 17.865 hybrid contribution -0.646 -0.021 1.147 1.316 sum 3.604 5.961 -15.142 16.667 Atomic orbital electron populations 1.23510 0.75174 1.05480 1.02361 1.86522 1.24707 1.33229 1.83412 1.24035 0.92587 0.81124 0.70907 1.90619 1.67643 1.37005 1.46746 1.20631 0.85552 1.00031 0.99142 0.83103 1.22404 1.03933 0.91535 0.95734 1.21177 1.02925 0.92507 0.95416 1.20754 0.96397 0.97531 0.92952 1.20729 1.02768 0.94378 0.97766 1.17509 0.97704 0.93994 0.84817 1.52880 1.41318 1.57306 1.28617 1.00796 0.75210 0.72542 0.71830 1.93363 1.75729 1.86898 1.44892 1.93392 1.88343 1.51423 1.67030 1.30765 1.22707 1.26990 1.36019 0.88152 1.25206 0.94338 0.98019 0.93442 1.70015 1.09178 1.39244 1.29539 0.87068 0.81354 0.80915 0.83406 1.16075 1.14721 1.17183 1.21831 1.03149 1.00644 0.93942 1.20676 0.96173 0.95654 0.95795 1.20243 1.02606 0.93289 0.96479 0.85695 0.93193 0.90693 0.86234 0.88752 0.90956 0.87491 0.84001 0.73079 0.89645 0.84122 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -9.39 10.53 -51.44 -0.54 -9.93 16 3 C 0.47 12.13 7.27 71.23 0.52 12.65 16 4 O -0.53 -15.77 15.20 21.96 0.33 -15.43 16 5 C -0.03 -0.70 3.38 -11.61 -0.04 -0.74 16 6 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 7 C -0.10 -1.60 6.40 31.50 0.20 -1.40 16 8 C -0.08 -1.69 6.76 30.52 0.21 -1.48 16 9 C -0.08 -2.06 6.13 -19.60 -0.12 -2.18 16 10 C -0.13 -4.21 9.96 22.43 0.22 -3.98 16 11 C 0.16 5.75 6.13 38.19 0.23 5.98 16 12 N -1.05 -40.46 5.77 -51.44 -0.30 -40.76 16 13 S 2.69 133.35 4.10 -56.49 -0.23 133.11 16 14 O -1.02 -52.75 15.77 -128.00 -2.02 -54.77 16 15 O -1.01 -52.61 14.39 -128.00 -1.84 -54.46 16 16 C -1.03 -58.75 10.17 67.73 0.69 -58.06 16 17 H 0.10 6.00 8.06 -2.91 -0.02 5.98 16 18 C 0.11 6.18 5.47 84.65 0.46 6.64 16 19 N -0.85 -49.39 13.96 21.45 0.30 -49.09 16 20 Si 0.85 42.30 26.08 68.60 1.79 44.09 16 21 H -0.24 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.22 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.25 -12.50 6.23 99.48 0.62 -11.88 16 24 C -0.17 -6.45 9.22 22.37 0.21 -6.25 16 25 C -0.06 -1.94 10.03 22.29 0.22 -1.71 16 26 C -0.13 -3.33 5.41 -19.55 -0.11 -3.43 16 27 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.07 1.33 8.13 -2.39 -0.02 1.32 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.60 6.94 -2.39 -0.02 1.58 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.43 13.33 8.95 -96.75 -0.87 12.46 16 36 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.14 5.71 5.73 -2.91 -0.02 5.70 16 38 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -74.08 334.22 1.54 -72.54 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.16 Total: 26.88 kcal Atomic # 6 Polarization: -56.08 SS G_CDS: 3.90 Total: -52.18 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: 0.00 Total: -89.85 kcal Atomic # 8 Polarization: -130.52 SS G_CDS: -4.07 Total: -134.59 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.79 Total: 44.09 kcal Atomic # 16 Polarization: 133.35 SS G_CDS: -0.23 Total: 133.11 kcal Total: -74.08 1.54 -72.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.438 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds