Wall clock time and date at job start Tue Mar 31 2020 14:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47104 * 174.66070 * 3 2 1 5 5 H 1.48507 * 109.47011 * 294.65979 * 3 2 1 6 6 H 1.48503 * 109.46921 * 54.65890 * 3 2 1 7 7 C 1.37882 * 119.99640 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.85161 * 348.87494 * 7 2 1 9 9 C 1.53085 * 108.49827 * 231.33732 * 8 7 2 10 10 C 1.52959 * 109.47638 * 305.32114 * 9 8 7 11 11 H 1.09000 * 109.41120 * 303.56589 * 10 9 8 12 12 N 1.46501 * 109.41416 * 183.71137 * 10 9 8 13 13 C 1.34780 * 120.00302 * 84.85428 * 12 10 9 14 14 O 1.21591 * 119.99501 * 0.02562 * 13 12 10 15 15 C 1.47534 * 119.99942 * 180.02562 * 13 12 10 16 16 C 1.39748 * 120.08519 * 359.72604 * 15 13 12 17 17 C 1.37739 * 120.01245 * 179.71737 * 16 15 13 18 18 C 1.38895 * 120.17991 * 0.55883 * 17 16 15 19 19 O 1.35801 * 119.91884 * 179.69686 * 18 17 16 20 20 C 1.39308 * 120.16411 * 359.71996 * 18 17 16 21 21 O 1.36027 * 120.00683 * 179.97438 * 20 18 17 22 22 C 1.38296 * 119.98654 * 359.97438 * 20 18 17 23 23 Cl 1.73601 * 120.08798 * 180.02562 * 22 20 18 24 24 C 1.52955 * 109.76230 * 63.63650 * 10 9 8 25 25 C 1.51266 * 120.84950 * 168.86033 * 7 2 1 26 26 H 0.97002 * 119.99775 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.62328 * 351.04598 * 8 7 2 28 28 H 1.08998 * 109.62612 * 111.42091 * 8 7 2 29 29 H 1.08994 * 109.38634 * 185.35547 * 9 8 7 30 30 H 1.09005 * 109.50641 * 65.35581 * 9 8 7 31 31 H 0.97009 * 119.99921 * 264.85753 * 12 10 9 32 32 H 1.08004 * 119.99544 * 0.02562 * 16 15 13 33 33 H 1.07999 * 119.91217 * 180.27480 * 17 16 15 34 34 H 0.96704 * 113.99831 * 270.01597 * 19 18 17 35 35 H 0.96701 * 113.99574 * 270.02092 * 21 20 18 36 36 H 1.09005 * 109.48307 * 56.42178 * 24 10 9 37 37 H 1.08998 * 109.48244 * 176.45590 * 24 10 9 38 38 H 1.09000 * 109.62612 * 8.95115 * 25 7 2 39 39 H 1.09002 * 109.62412 * 248.38676 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7039 1.3493 0.1303 5 1 1.9909 2.3385 -1.2725 6 1 1.7954 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2888 -2.5032 0.2495 9 6 2.0329 -3.2607 1.3521 10 6 3.5042 -3.4129 0.9627 11 1 3.5734 -3.9126 -0.0036 12 7 4.1957 -4.2141 1.9757 13 6 4.1681 -5.5597 1.9050 14 8 3.5696 -6.1087 1.0001 15 6 4.8640 -6.3664 2.9255 16 6 5.5572 -5.7371 3.9630 17 6 6.2016 -6.4918 4.9183 18 6 6.1746 -7.8787 4.8476 19 8 6.8168 -8.6175 5.7888 20 6 5.4907 -8.5137 3.8133 21 8 5.4668 -9.8722 3.7469 22 6 4.8361 -7.7628 2.8541 23 17 3.9825 -8.5514 1.5645 24 6 4.1600 -2.0341 0.8702 25 6 3.4958 -1.2288 -0.2514 26 1 -0.4850 0.8401 -0.0004 27 1 0.2650 -2.3057 0.5673 28 1 1.2802 -3.0962 -0.6650 29 1 1.5863 -4.2470 1.4782 30 1 1.9600 -2.7061 2.2877 31 1 4.6735 -3.7760 2.6975 32 1 5.5836 -4.6589 4.0187 33 1 6.7331 -6.0038 5.7219 34 1 7.7365 -8.8205 5.5694 35 1 6.1938 -10.2538 3.2360 36 1 4.0367 -1.5086 1.8172 37 1 5.2220 -2.1505 0.6544 38 1 3.8901 -0.2126 -0.2555 39 1 3.6945 -1.7053 -1.2114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193236533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:53 Heat of formation + Delta-G solvation = -100.907620 kcal Electronic energy + Delta-G solvation = -25000.787325 eV Core-core repulsion = 21127.622795 eV Total energy + Delta-G solvation = -3873.164530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80806 -39.45442 -37.55002 -37.12800 -36.42174 -36.22852 -33.76987 -31.74277 -30.62518 -29.93500 -29.58808 -27.21706 -24.13127 -23.18238 -22.03992 -21.66338 -20.40185 -19.72469 -19.26298 -18.35866 -17.38162 -16.91693 -16.20455 -15.79220 -15.47574 -15.37365 -14.70712 -14.54791 -14.47068 -14.08221 -13.44186 -13.18402 -13.05200 -12.82687 -12.67450 -12.28626 -12.10203 -12.05467 -11.63136 -11.51804 -11.15521 -11.06401 -10.86894 -10.82178 -10.75408 -10.24866 -9.93494 -9.44467 -9.39939 -9.12765 -9.07224 -9.02434 -8.83138 -8.42730 -8.28285 -6.11788 -4.01168 0.27577 0.61704 1.96199 2.55140 3.23148 3.25710 3.32197 3.34455 3.48199 3.63047 3.68744 4.36298 4.41563 4.60666 4.68535 4.96829 5.11833 5.14650 5.50254 5.59366 5.68900 5.70954 5.84919 5.97542 6.14142 6.45048 6.47219 6.67288 6.75518 6.79288 6.89678 7.05150 7.08520 7.22485 7.26674 7.39495 7.63106 7.75188 7.81324 7.87181 8.38631 8.45989 8.96276 9.53273 10.97726 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.002946 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.982022 B = 9502.916730 C =10217.161887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.490 4.490 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.081 0.919 12 N -0.717 5.717 13 C 0.546 3.454 14 O -0.513 6.513 15 C -0.116 4.116 16 C -0.068 4.068 17 C -0.135 4.135 18 C 0.113 3.887 19 O -0.482 6.482 20 C 0.077 3.923 21 O -0.473 6.473 22 C -0.003 4.003 23 Cl -0.009 7.009 24 C -0.113 4.113 25 C -0.021 4.021 26 H 0.263 0.737 27 H 0.054 0.946 28 H 0.007 0.993 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.391 0.609 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.392 0.608 35 H 0.389 0.611 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 -14.122 10.013 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.127 4.127 3 Si 0.707 3.293 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.509 4.509 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.053 3.947 11 H 0.099 0.901 12 N -0.367 5.367 13 C 0.331 3.669 14 O -0.389 6.389 15 C -0.121 4.121 16 C -0.087 4.087 17 C -0.154 4.154 18 C 0.067 3.933 19 O -0.292 6.292 20 C 0.031 3.969 21 O -0.282 6.282 22 C -0.032 4.032 23 Cl 0.021 6.979 24 C -0.152 4.152 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 15.372 -14.387 9.846 23.243 hybrid contribution 1.432 0.933 -0.025 1.709 sum 16.804 -13.454 9.822 23.661 Atomic orbital electron populations 1.69912 1.06261 1.26832 1.49174 1.24863 0.94617 0.98558 0.94618 0.86758 0.80977 0.83798 0.77815 1.18122 1.20942 1.21263 1.20044 0.90889 0.92040 1.47935 1.19293 0.97251 0.93315 0.92572 1.21953 0.93808 0.98598 1.00984 1.21105 0.92630 0.90543 0.90423 0.90106 1.46351 1.54375 1.05417 1.30605 1.17893 0.81206 0.82735 0.85078 1.90890 1.42565 1.71084 1.34342 1.19994 1.01800 0.91997 0.98282 1.21241 0.94564 1.00662 0.92210 1.21363 1.01772 0.92277 0.99997 1.18765 0.95891 0.89617 0.89073 1.84873 1.29407 1.72585 1.42360 1.18349 1.00635 0.84143 0.93812 1.84979 1.52991 1.14429 1.75834 1.21374 0.97693 0.91978 0.92117 1.98439 1.74086 1.79140 1.46254 1.21880 0.96889 0.94697 1.01730 1.19906 0.96096 0.96371 0.93534 0.92658 0.92723 0.97484 0.94535 0.93301 0.77495 0.83801 0.83692 0.75113 0.75511 0.92630 0.94444 0.93779 0.96204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 12.82 55.43 0.71 -24.66 16 2 C 0.08 2.05 5.44 -17.82 -0.10 1.96 16 3 Si 0.88 20.20 27.95 -169.99 -4.75 15.45 16 4 H -0.26 -5.52 5.58 56.52 0.32 -5.21 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.49 -12.67 5.48 -98.92 -0.54 -13.22 16 8 C 0.01 0.35 5.92 -27.56 -0.16 0.18 16 9 C -0.11 -2.48 5.49 -26.71 -0.15 -2.62 16 10 C 0.16 2.95 2.35 -67.97 -0.16 2.79 16 11 H 0.08 1.71 7.57 -51.93 -0.39 1.31 16 12 N -0.72 -10.89 5.02 -54.89 -0.28 -11.16 16 13 C 0.55 8.79 7.72 -12.47 -0.10 8.69 16 14 O -0.51 -10.09 13.62 5.29 0.07 -10.01 16 15 C -0.12 -1.49 5.88 -104.94 -0.62 -2.11 16 16 C -0.07 -0.62 9.53 -39.20 -0.37 -1.00 16 17 C -0.14 -1.07 9.96 -39.52 -0.39 -1.46 16 18 C 0.11 1.00 6.72 -38.94 -0.26 0.74 16 19 O -0.48 -3.54 13.27 -33.83 -0.45 -3.99 16 20 C 0.08 0.82 6.70 -39.16 -0.26 0.56 16 21 O -0.47 -4.48 12.73 -34.54 -0.44 -4.92 16 22 C 0.00 -0.04 6.36 -38.96 -0.25 -0.28 16 23 Cl -0.01 -0.13 25.55 -51.86 -1.32 -1.45 16 24 C -0.11 -2.11 5.40 -26.64 -0.14 -2.26 16 25 C -0.02 -0.47 5.65 -27.49 -0.16 -0.63 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 1.52 7.19 -51.93 -0.37 1.14 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.39 4.59 6.62 -40.82 -0.27 4.32 16 32 H 0.14 0.98 6.39 -52.48 -0.34 0.65 16 33 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.39 0.75 9.06 45.56 0.41 1.16 16 35 H 0.39 1.73 9.06 45.56 0.41 2.14 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.97 4.36 -51.93 -0.23 0.74 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -33.78 334.85 -8.02 -41.80 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -2.95 Total: 2.56 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.66 Total: -8.66 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.44 Total: -35.83 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.82 Total: -18.92 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.75 Total: 15.45 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.32 Total: -1.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.78 -8.02 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193236533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.104 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds