Wall clock time and date at job start Tue Mar 31 2020 14:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47104 * 174.66070 * 3 2 1 5 5 H 1.48507 * 109.47011 * 294.65979 * 3 2 1 6 6 H 1.48503 * 109.46921 * 54.65890 * 3 2 1 7 7 C 1.37882 * 119.99640 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.85161 * 348.87494 * 7 2 1 9 9 C 1.53085 * 108.49827 * 231.33732 * 8 7 2 10 10 C 1.52959 * 109.47638 * 305.32114 * 9 8 7 11 11 H 1.09000 * 109.41120 * 303.56589 * 10 9 8 12 12 N 1.46501 * 109.41416 * 183.71137 * 10 9 8 13 13 C 1.34780 * 120.00302 * 84.85428 * 12 10 9 14 14 O 1.21591 * 119.99501 * 0.02562 * 13 12 10 15 15 C 1.47534 * 119.99942 * 180.02562 * 13 12 10 16 16 C 1.39748 * 120.08519 * 359.72604 * 15 13 12 17 17 C 1.37739 * 120.01245 * 179.71737 * 16 15 13 18 18 C 1.38895 * 120.17991 * 0.55883 * 17 16 15 19 19 O 1.35801 * 119.91884 * 179.69686 * 18 17 16 20 20 C 1.39308 * 120.16411 * 359.71996 * 18 17 16 21 21 O 1.36027 * 120.00683 * 179.97438 * 20 18 17 22 22 C 1.38296 * 119.98654 * 359.97438 * 20 18 17 23 23 Cl 1.73601 * 120.08798 * 180.02562 * 22 20 18 24 24 C 1.52955 * 109.76230 * 63.63650 * 10 9 8 25 25 C 1.51266 * 120.84950 * 168.86033 * 7 2 1 26 26 H 0.97002 * 119.99775 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.62328 * 351.04598 * 8 7 2 28 28 H 1.08998 * 109.62612 * 111.42091 * 8 7 2 29 29 H 1.08994 * 109.38634 * 185.35547 * 9 8 7 30 30 H 1.09005 * 109.50641 * 65.35581 * 9 8 7 31 31 H 0.97009 * 119.99921 * 264.85753 * 12 10 9 32 32 H 1.08004 * 119.99544 * 0.02562 * 16 15 13 33 33 H 1.07999 * 119.91217 * 180.27480 * 17 16 15 34 34 H 0.96704 * 113.99831 * 270.01597 * 19 18 17 35 35 H 0.96701 * 113.99574 * 270.02092 * 21 20 18 36 36 H 1.09005 * 109.48307 * 56.42178 * 24 10 9 37 37 H 1.08998 * 109.48244 * 176.45590 * 24 10 9 38 38 H 1.09000 * 109.62612 * 8.95115 * 25 7 2 39 39 H 1.09002 * 109.62412 * 248.38676 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7039 1.3493 0.1303 5 1 1.9909 2.3385 -1.2725 6 1 1.7954 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2888 -2.5032 0.2495 9 6 2.0329 -3.2607 1.3521 10 6 3.5042 -3.4129 0.9627 11 1 3.5734 -3.9126 -0.0036 12 7 4.1957 -4.2141 1.9757 13 6 4.1681 -5.5597 1.9050 14 8 3.5696 -6.1087 1.0001 15 6 4.8640 -6.3664 2.9255 16 6 5.5572 -5.7371 3.9630 17 6 6.2016 -6.4918 4.9183 18 6 6.1746 -7.8787 4.8476 19 8 6.8168 -8.6175 5.7888 20 6 5.4907 -8.5137 3.8133 21 8 5.4668 -9.8722 3.7469 22 6 4.8361 -7.7628 2.8541 23 17 3.9825 -8.5514 1.5645 24 6 4.1600 -2.0341 0.8702 25 6 3.4958 -1.2288 -0.2514 26 1 -0.4850 0.8401 -0.0004 27 1 0.2650 -2.3057 0.5673 28 1 1.2802 -3.0962 -0.6650 29 1 1.5863 -4.2470 1.4782 30 1 1.9600 -2.7061 2.2877 31 1 4.6735 -3.7760 2.6975 32 1 5.5836 -4.6589 4.0187 33 1 6.7331 -6.0038 5.7219 34 1 7.7365 -8.8205 5.5694 35 1 6.1938 -10.2538 3.2360 36 1 4.0367 -1.5086 1.8172 37 1 5.2220 -2.1505 0.6544 38 1 3.8901 -0.2126 -0.2555 39 1 3.6945 -1.7053 -1.2114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193236533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:52 Heat of formation + Delta-G solvation = -127.231503 kcal Electronic energy + Delta-G solvation = -25001.928814 eV Core-core repulsion = 21127.622795 eV Total energy + Delta-G solvation = -3874.306020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66155 -40.58258 -38.57123 -38.16645 -37.51489 -37.09458 -35.38477 -33.47450 -31.52565 -31.37979 -30.80604 -28.84235 -25.18595 -24.00249 -23.61084 -23.36017 -21.60874 -21.31593 -20.06563 -19.24275 -18.34341 -17.96862 -17.71089 -16.75556 -16.64571 -16.36158 -16.19990 -15.90268 -15.41325 -15.23420 -14.89770 -14.60280 -14.19449 -14.08816 -14.02687 -13.73892 -13.59993 -13.34395 -12.79146 -12.75879 -12.70836 -12.54555 -12.36648 -12.18772 -11.86919 -11.77787 -11.48527 -11.21093 -10.96386 -10.72374 -10.49915 -10.45606 -9.99716 -9.82804 -9.71707 -8.14994 -6.09508 -0.52836 -0.10390 1.05831 1.43729 1.46312 1.56257 1.66548 2.11331 2.45089 2.50788 2.88475 3.09618 3.12708 3.63849 3.76509 3.97397 4.05505 4.23303 4.25190 4.48894 4.53411 4.73460 4.74861 4.88986 4.95694 5.00567 5.01901 5.07593 5.16737 5.25087 5.31675 5.38342 5.57528 5.60351 5.69233 5.79863 5.82479 6.35740 6.49504 6.62186 6.81370 6.96111 7.28071 7.48442 8.96701 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.002946 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.982022 B = 9502.916730 C =10217.161887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.224 1.224 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.501 4.501 8 C 0.011 3.989 9 C -0.102 4.102 10 C 0.169 3.831 11 H 0.055 0.945 12 N -0.704 5.704 13 C 0.543 3.457 14 O -0.558 6.558 15 C -0.139 4.139 16 C -0.055 4.055 17 C -0.122 4.122 18 C 0.128 3.872 19 O -0.488 6.488 20 C 0.072 3.928 21 O -0.486 6.486 22 C -0.023 4.023 23 Cl -0.041 7.041 24 C -0.104 4.104 25 C -0.025 4.025 26 H 0.262 0.738 27 H 0.018 0.982 28 H -0.015 1.015 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.412 0.588 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.418 0.582 35 H 0.409 0.591 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.239 -13.456 12.710 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.147 1.147 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.520 4.520 8 C -0.027 4.027 9 C -0.141 4.141 10 C 0.065 3.935 11 H 0.073 0.927 12 N -0.356 5.356 13 C 0.331 3.669 14 O -0.437 6.437 15 C -0.143 4.143 16 C -0.074 4.074 17 C -0.140 4.140 18 C 0.081 3.919 19 O -0.303 6.303 20 C 0.025 3.975 21 O -0.298 6.298 22 C -0.052 4.052 23 Cl -0.012 7.012 24 C -0.142 4.142 25 C -0.062 4.062 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.003 0.997 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.250 0.750 32 H 0.190 0.810 33 H 0.199 0.801 34 H 0.280 0.720 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 19.582 -13.744 12.571 27.025 hybrid contribution 0.174 0.553 -0.795 0.984 sum 19.755 -13.191 11.776 26.513 Atomic orbital electron populations 1.70080 1.08286 1.27555 1.51520 1.25785 0.95287 1.02464 0.94624 0.85754 0.81360 0.78911 0.77212 1.14719 1.21523 1.21454 1.20630 0.93131 0.91673 1.46565 1.19236 0.96224 0.94300 0.92944 1.21741 0.95689 0.97170 0.99469 1.20641 0.91090 0.91492 0.90320 0.92661 1.45975 1.54065 1.05099 1.30430 1.18436 0.80515 0.82861 0.85131 1.90872 1.44546 1.71897 1.36396 1.19768 1.03938 0.91542 0.99099 1.21525 0.92947 1.02088 0.90817 1.21716 1.00624 0.91647 1.00006 1.18842 0.94879 0.90211 0.87964 1.84814 1.31408 1.72382 1.41670 1.18459 1.00675 0.84424 0.93917 1.84923 1.54490 1.14121 1.76280 1.21592 0.98876 0.92378 0.92326 1.98420 1.75072 1.79706 1.47979 1.21742 0.98406 0.93270 1.00816 1.19918 0.93775 0.97706 0.94842 0.92909 0.96332 0.99690 0.95746 0.92873 0.74991 0.81019 0.80069 0.72047 0.73216 0.91235 0.90743 0.92754 0.96641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 12.82 21.45 0.28 -55.43 16 2 C 0.02 0.89 5.44 84.66 0.46 1.35 16 3 Si 0.94 41.00 27.95 68.60 1.92 42.92 16 4 H -0.22 -8.49 5.58 99.48 0.56 -7.94 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.50 -26.16 5.48 -16.17 -0.09 -26.25 16 8 C 0.01 0.59 5.92 30.06 0.18 0.77 16 9 C -0.10 -4.49 5.49 30.61 0.17 -4.32 16 10 C 0.17 6.24 2.35 44.96 0.11 6.35 16 11 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 12 N -0.70 -19.93 5.02 -445.83 -2.24 -22.17 16 13 C 0.54 17.15 7.72 86.69 0.67 17.82 16 14 O -0.56 -22.66 13.62 -4.00 -0.05 -22.71 16 15 C -0.14 -3.33 5.88 -20.07 -0.12 -3.45 16 16 C -0.06 -0.79 9.53 22.52 0.21 -0.57 16 17 C -0.12 -1.31 9.96 22.31 0.22 -1.09 16 18 C 0.13 1.79 6.72 22.68 0.15 1.94 16 19 O -0.49 -5.07 13.27 -77.25 -1.02 -6.10 16 20 C 0.07 1.39 6.70 22.54 0.15 1.54 16 21 O -0.49 -8.52 12.73 -79.79 -1.02 -9.53 16 22 C -0.02 -0.58 6.36 22.67 0.14 -0.43 16 23 Cl -0.04 -1.25 25.55 -2.72 -0.07 -1.32 16 24 C -0.10 -3.54 5.40 30.65 0.17 -3.38 16 25 C -0.02 -1.05 5.65 30.10 0.17 -0.88 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.02 1.08 7.19 -2.38 -0.02 1.06 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.41 8.05 6.62 -92.70 -0.61 7.44 16 32 H 0.17 1.41 6.39 -2.91 -0.02 1.39 16 33 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 34 H 0.42 -0.31 9.06 -74.05 -0.67 -0.98 16 35 H 0.41 3.06 9.06 -74.06 -0.67 2.39 16 36 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 2.20 4.36 -2.39 -0.01 2.19 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -78.35 334.85 -0.58 -78.93 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.96 Total: 6.01 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 2.60 Total: -10.60 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.96 Total: -77.60 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -2.10 Total: -38.34 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.92 Total: 42.92 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.32 kcal Total: -78.35 -0.58 -78.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193236533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.303 kcal (2) G-P(sol) polarization free energy of solvation -78.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds