Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86795 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47537 * 300.00428 * 3 2 1 6 6 H 1.48500 * 109.47063 * 60.00404 * 3 2 1 7 7 C 1.39909 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99847 * 157.58184 * 7 2 1 9 9 C 1.41016 * 119.99962 * 337.58509 * 7 2 1 10 10 C 1.40737 * 120.30711 * 338.70934 * 9 7 2 11 11 C 1.36434 * 119.95012 * 180.02562 * 10 9 7 12 12 C 1.38930 * 120.60478 * 359.97080 * 11 10 9 13 13 C 1.38117 * 120.63570 * 0.03142 * 12 11 10 14 14 C 1.38811 * 120.02221 * 359.97438 * 13 12 11 15 15 N 1.38679 * 120.29842 * 179.97438 * 14 13 12 16 16 C 1.39590 * 120.00111 * 352.54909 * 15 14 13 17 17 C 1.39012 * 120.06474 * 135.02602 * 16 15 14 18 18 C 1.38072 * 119.96730 * 180.02562 * 17 16 15 19 19 C 1.38291 * 120.10518 * 359.97291 * 18 17 16 20 20 C 1.50700 * 119.93379 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47190 * 0.02562 * 20 19 18 22 22 F 1.39898 * 109.46912 * 120.00237 * 20 19 18 23 23 F 1.39891 * 109.47306 * 240.00357 * 20 19 18 24 24 C 1.38514 * 120.13266 * 0.02562 * 19 18 17 25 25 F 1.35102 * 119.98217 * 180.02562 * 24 19 18 26 26 C 1.38326 * 120.02959 * 359.75607 * 24 19 18 27 27 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.02956 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.69682 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.67863 * 180.02562 * 12 11 10 31 31 H 1.07993 * 119.98626 * 179.71757 * 13 12 11 32 32 H 0.97006 * 120.00382 * 172.54537 * 15 14 13 33 33 H 1.07996 * 120.02136 * 0.02634 * 17 16 15 34 34 H 1.07993 * 119.94736 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.05366 * 180.28146 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3965 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0085 -1.2116 -0.0005 8 1 3.0272 -1.2468 -0.3573 9 6 1.3833 -2.3869 0.4646 10 6 0.2707 -2.3076 1.3229 11 6 -0.3282 -3.4494 1.7689 12 6 0.1494 -4.6958 1.3834 13 6 1.2396 -4.8022 0.5421 14 6 1.8691 -3.6576 0.0726 15 7 2.9644 -3.7578 -0.7719 16 6 3.5350 -5.0054 -1.0298 17 6 3.8738 -5.3608 -2.3304 18 6 4.4376 -6.5956 -2.5833 19 6 4.6665 -7.4794 -1.5446 20 6 5.2826 -8.8259 -1.8250 21 9 5.5324 -8.9481 -3.1961 22 9 6.4852 -8.9443 -1.1200 23 9 4.4028 -9.8349 -1.4191 24 6 4.3306 -7.1297 -0.2471 25 9 4.5561 -7.9953 0.7653 26 6 3.7697 -5.8923 0.0131 27 1 -0.4850 0.8400 0.0004 28 1 -0.1082 -1.3437 1.6288 29 1 -1.1820 -3.3838 2.4271 30 1 -0.3364 -5.5900 1.7451 31 1 1.6049 -5.7764 0.2527 32 1 3.3341 -2.9610 -1.1835 33 1 3.6961 -4.6716 -3.1426 34 1 4.7010 -6.8712 -3.5937 35 1 3.5118 -5.6174 1.0252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209913199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = -146.165581 kcal Electronic energy + Delta-G solvation = -26652.605941 eV Core-core repulsion = 22114.594683 eV Total energy + Delta-G solvation = -4538.011259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.15953 -48.95681 -47.62475 -47.55727 -39.71657 -37.82028 -34.97048 -33.83949 -31.04384 -30.69633 -29.62511 -28.18742 -25.60048 -25.03311 -23.01952 -22.17744 -21.02183 -20.32798 -18.51778 -18.45619 -18.42600 -17.51278 -17.49011 -16.61500 -15.95457 -15.60375 -15.46187 -15.06948 -14.62599 -14.57281 -14.43521 -14.08220 -14.02538 -13.79998 -13.74635 -13.52909 -13.34366 -13.02887 -12.86412 -12.72594 -12.22895 -11.95630 -11.74527 -11.60803 -11.43667 -11.28454 -11.11012 -10.64617 -10.13285 -9.86145 -9.76808 -9.30525 -8.83667 -8.56007 -7.66444 -7.05549 -6.64232 -4.43215 0.89949 1.20234 2.62091 2.69938 2.85535 2.96285 2.99690 3.07806 3.48819 3.70894 3.76902 3.80891 4.02551 4.29751 4.44208 4.46162 4.80747 5.14561 5.28614 5.48814 5.51754 5.84614 5.91590 6.05275 6.11179 6.25072 6.32814 6.39788 6.67288 6.76211 6.94456 7.00140 7.21224 7.46853 7.51978 7.91750 7.94594 8.10585 8.32061 8.45131 8.65314 8.78060 9.96216 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.003243 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.699092 B = 8632.531031 C = 9431.473452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.147 4.147 11 C -0.122 4.122 12 C -0.211 4.211 13 C -0.140 4.140 14 C 0.046 3.954 15 N -0.658 5.658 16 C 0.259 3.741 17 C -0.185 4.185 18 C -0.016 4.016 19 C -0.280 4.280 20 C 0.518 3.482 21 F -0.179 7.179 22 F -0.179 7.179 23 F -0.178 7.178 24 C 0.177 3.823 25 F -0.129 7.129 26 C -0.201 4.201 27 H 0.283 0.717 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.413 0.587 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 -8.218 -4.021 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.167 4.167 11 C -0.141 4.141 12 C -0.231 4.231 13 C -0.161 4.161 14 C -0.050 4.050 15 N -0.278 5.278 16 C 0.153 3.847 17 C -0.207 4.207 18 C -0.035 4.035 19 C -0.284 4.284 20 C 0.464 3.536 21 F -0.161 7.161 22 F -0.160 7.160 23 F -0.159 7.159 24 C 0.156 3.844 25 F -0.108 7.108 26 C -0.224 4.224 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.251 0.749 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.003 -8.117 -3.926 11.416 hybrid contribution 0.491 0.689 0.004 0.846 sum 7.494 -7.428 -3.922 11.257 Atomic orbital electron populations 1.69866 1.07681 1.29529 1.33460 1.25846 0.94614 1.01344 0.92099 0.86318 0.81074 0.80991 0.78770 1.18344 1.19928 1.19531 1.19247 0.99674 0.92065 1.38419 0.90612 1.17231 0.92982 0.89725 0.91429 1.20882 0.98669 0.97490 0.99698 1.20420 0.99509 0.93175 1.01018 1.20186 1.00637 0.96148 1.06136 1.20395 0.98455 0.95367 1.01915 1.17732 0.92291 0.94404 1.00556 1.41778 1.30952 1.05046 1.50049 1.17625 0.88785 0.86696 0.91565 1.21046 1.06568 0.97450 0.95639 1.20550 0.93248 0.91804 0.97890 1.19679 1.17259 0.96481 0.94961 1.18031 0.76230 0.85540 0.73798 1.93138 1.94446 1.96527 1.31957 1.93208 1.47359 1.96622 1.78824 1.93212 1.68908 1.63467 1.90348 1.16955 0.96735 0.87892 0.82774 1.91539 1.92073 1.68405 1.58753 1.21111 1.06043 0.93837 1.01384 0.90622 0.86134 0.89308 0.89126 0.88359 0.74869 0.84349 0.83975 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 11.03 55.55 0.61 -17.92 16 2 C 0.08 1.83 5.06 -17.33 -0.09 1.74 16 3 Si 0.90 17.03 29.61 -169.99 -5.03 12.00 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.47 -10.88 8.52 -37.90 -0.32 -11.20 16 8 H 0.08 1.66 6.69 -52.49 -0.35 1.31 16 9 C 0.09 2.16 5.61 -106.63 -0.60 1.57 16 10 C -0.15 -3.54 8.68 -39.29 -0.34 -3.88 16 11 C -0.12 -2.70 9.97 -39.98 -0.40 -3.10 16 12 C -0.21 -4.48 10.03 -39.37 -0.40 -4.87 16 13 C -0.14 -2.95 8.16 -39.41 -0.32 -3.27 16 14 C 0.05 0.99 6.45 -83.28 -0.54 0.45 16 15 N -0.66 -11.97 5.35 -8.05 -0.04 -12.01 16 16 C 0.26 4.11 5.74 -83.79 -0.48 3.63 16 17 C -0.19 -2.45 9.97 -39.36 -0.39 -2.84 16 18 C -0.02 -0.19 9.42 -39.62 -0.37 -0.57 16 19 C -0.28 -3.87 5.38 -104.50 -0.56 -4.44 16 20 C 0.52 6.94 3.02 36.01 0.11 7.05 16 21 F -0.18 -2.19 15.97 2.25 0.04 -2.15 16 22 F -0.18 -2.48 17.05 2.25 0.04 -2.44 16 23 F -0.18 -2.52 17.05 2.25 0.04 -2.48 16 24 C 0.18 2.69 7.12 -39.45 -0.28 2.41 16 25 F -0.13 -2.02 16.45 2.25 0.04 -1.99 16 26 C -0.20 -3.22 7.40 -39.30 -0.29 -3.51 16 27 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 28 H 0.12 2.99 6.09 -52.49 -0.32 2.67 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.10 1.91 5.54 -52.49 -0.29 1.62 16 32 H 0.41 7.14 7.07 -40.82 -0.29 6.85 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.14 1.38 7.15 -52.49 -0.38 1.00 16 35 H 0.15 2.53 6.98 -52.49 -0.37 2.16 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -24.53 316.35 -7.22 -31.75 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -2.39 Total: 11.30 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -5.27 Total: -20.83 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.57 Total: -29.93 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 0.15 Total: -9.06 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -24.53 -7.22 -31.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209913199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.417 kcal (2) G-P(sol) polarization free energy of solvation -24.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds