Wall clock time and date at job start Tue Mar 31 2020 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86795 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47537 * 300.00428 * 3 2 1 6 6 H 1.48500 * 109.47063 * 60.00404 * 3 2 1 7 7 C 1.39909 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99847 * 157.58184 * 7 2 1 9 9 C 1.41016 * 119.99962 * 337.58509 * 7 2 1 10 10 C 1.40737 * 120.30711 * 338.70934 * 9 7 2 11 11 C 1.36434 * 119.95012 * 180.02562 * 10 9 7 12 12 C 1.38930 * 120.60478 * 359.97080 * 11 10 9 13 13 C 1.38117 * 120.63570 * 0.03142 * 12 11 10 14 14 C 1.38811 * 120.02221 * 359.97438 * 13 12 11 15 15 N 1.38679 * 120.29842 * 179.97438 * 14 13 12 16 16 C 1.39590 * 120.00111 * 352.54909 * 15 14 13 17 17 C 1.39012 * 120.06474 * 135.02602 * 16 15 14 18 18 C 1.38072 * 119.96730 * 180.02562 * 17 16 15 19 19 C 1.38291 * 120.10518 * 359.97291 * 18 17 16 20 20 C 1.50700 * 119.93379 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47190 * 0.02562 * 20 19 18 22 22 F 1.39898 * 109.46912 * 120.00237 * 20 19 18 23 23 F 1.39891 * 109.47306 * 240.00357 * 20 19 18 24 24 C 1.38514 * 120.13266 * 0.02562 * 19 18 17 25 25 F 1.35102 * 119.98217 * 180.02562 * 24 19 18 26 26 C 1.38326 * 120.02959 * 359.75607 * 24 19 18 27 27 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.02956 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.69682 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.67863 * 180.02562 * 12 11 10 31 31 H 1.07993 * 119.98626 * 179.71757 * 13 12 11 32 32 H 0.97006 * 120.00382 * 172.54537 * 15 14 13 33 33 H 1.07996 * 120.02136 * 0.02634 * 17 16 15 34 34 H 1.07993 * 119.94736 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.05366 * 180.28146 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3965 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0085 -1.2116 -0.0005 8 1 3.0272 -1.2468 -0.3573 9 6 1.3833 -2.3869 0.4646 10 6 0.2707 -2.3076 1.3229 11 6 -0.3282 -3.4494 1.7689 12 6 0.1494 -4.6958 1.3834 13 6 1.2396 -4.8022 0.5421 14 6 1.8691 -3.6576 0.0726 15 7 2.9644 -3.7578 -0.7719 16 6 3.5350 -5.0054 -1.0298 17 6 3.8738 -5.3608 -2.3304 18 6 4.4376 -6.5956 -2.5833 19 6 4.6665 -7.4794 -1.5446 20 6 5.2826 -8.8259 -1.8250 21 9 5.5324 -8.9481 -3.1961 22 9 6.4852 -8.9443 -1.1200 23 9 4.4028 -9.8349 -1.4191 24 6 4.3306 -7.1297 -0.2471 25 9 4.5561 -7.9953 0.7653 26 6 3.7697 -5.8923 0.0131 27 1 -0.4850 0.8400 0.0004 28 1 -0.1082 -1.3437 1.6288 29 1 -1.1820 -3.3838 2.4271 30 1 -0.3364 -5.5900 1.7451 31 1 1.6049 -5.7764 0.2527 32 1 3.3341 -2.9610 -1.1835 33 1 3.6961 -4.6716 -3.1426 34 1 4.7010 -6.8712 -3.5937 35 1 3.5118 -5.6174 1.0252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209913199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:24 Heat of formation + Delta-G solvation = -155.305315 kcal Electronic energy + Delta-G solvation = -26653.002270 eV Core-core repulsion = 22114.594683 eV Total energy + Delta-G solvation = -4538.407587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.23831 -50.16363 -48.67147 -48.65743 -41.03922 -39.32545 -36.38906 -35.51765 -32.42782 -31.89328 -31.23088 -29.70706 -27.18002 -26.34632 -24.21977 -23.50024 -22.59804 -21.85956 -19.64697 -19.54960 -19.53301 -19.15678 -18.77632 -18.11072 -17.25278 -16.85528 -16.77286 -16.61114 -16.07796 -15.63397 -15.51832 -15.39943 -15.08876 -14.93843 -14.81858 -14.77253 -14.66195 -14.62647 -14.41991 -14.06297 -13.72732 -13.36614 -13.24225 -12.91951 -12.80720 -12.74272 -12.54119 -12.15590 -11.62829 -11.48153 -11.42083 -10.99253 -10.05706 -9.88551 -9.40322 -8.72156 -8.22638 -6.16802 -0.28965 0.05151 0.97656 1.18966 1.41760 1.51818 1.55637 1.60274 2.20421 2.28081 2.44898 2.65865 2.74875 2.90231 3.13210 3.36734 3.68103 3.77675 4.02773 4.10126 4.32254 4.47228 4.57952 4.64694 4.78092 4.83378 4.98761 5.05562 5.17434 5.24753 5.34650 5.43901 5.61129 5.79899 5.86514 6.21753 6.24539 6.44975 6.73631 6.83424 7.00108 7.09258 8.31868 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.003243 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.699092 B = 8632.531031 C = 9431.473452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.042 3.958 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.058 3.942 10 C -0.174 4.174 11 C -0.134 4.134 12 C -0.212 4.212 13 C -0.151 4.151 14 C 0.056 3.944 15 N -0.664 5.664 16 C 0.241 3.759 17 C -0.170 4.170 18 C -0.003 4.003 19 C -0.273 4.273 20 C 0.521 3.479 21 F -0.168 7.168 22 F -0.182 7.182 23 F -0.182 7.182 24 C 0.167 3.833 25 F -0.135 7.135 26 C -0.207 4.207 27 H 0.288 0.712 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.415 0.585 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 -9.168 -5.691 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.174 4.174 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.054 3.946 10 C -0.194 4.194 11 C -0.153 4.153 12 C -0.232 4.232 13 C -0.173 4.173 14 C -0.040 4.040 15 N -0.286 5.286 16 C 0.139 3.861 17 C -0.191 4.191 18 C -0.022 4.022 19 C -0.276 4.276 20 C 0.467 3.533 21 F -0.149 7.149 22 F -0.163 7.163 23 F -0.164 7.164 24 C 0.147 3.853 25 F -0.113 7.113 26 C -0.229 4.229 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.195 0.805 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.427 -9.114 -5.615 13.624 hybrid contribution 0.144 0.744 0.458 0.886 sum 8.571 -8.370 -5.157 13.043 Atomic orbital electron populations 1.69923 1.09085 1.30526 1.34739 1.26614 0.95194 1.04226 0.91364 0.85279 0.79748 0.76847 0.78616 1.17923 1.19334 1.19656 1.19490 1.00131 0.92708 1.39524 0.89875 1.17545 0.93697 0.91064 0.92312 1.20872 0.99957 0.97422 1.01157 1.20618 1.00117 0.93107 1.01483 1.20507 1.00530 0.96582 1.05586 1.20609 0.98590 0.95916 1.02144 1.17833 0.92755 0.93800 0.99639 1.41646 1.30733 1.06156 1.50066 1.17827 0.89693 0.85896 0.92693 1.21312 1.04776 0.98029 0.94973 1.20928 0.91554 0.90659 0.99009 1.19900 1.16100 0.96940 0.94698 1.17930 0.76005 0.85109 0.74230 1.93164 1.94347 1.96446 1.30980 1.93209 1.47487 1.96596 1.79000 1.93209 1.69088 1.63619 1.90473 1.17028 0.97312 0.87683 0.83325 1.91526 1.92164 1.68476 1.59148 1.21020 1.06602 0.94373 1.00950 0.90173 0.87917 0.87706 0.86826 0.86848 0.74607 0.81993 0.80475 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.03 11.03 21.82 0.24 -39.79 16 2 C 0.04 1.95 5.06 85.24 0.43 2.39 16 3 Si 0.97 35.27 29.61 68.60 2.03 37.30 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 6 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.49 -23.41 8.52 23.36 0.20 -23.21 16 8 H 0.08 3.68 6.69 -2.91 -0.02 3.66 16 9 C 0.06 2.85 5.61 -21.17 -0.12 2.73 16 10 C -0.17 -8.68 8.68 22.46 0.19 -8.49 16 11 C -0.13 -6.03 9.97 22.01 0.22 -5.82 16 12 C -0.21 -8.94 10.03 22.41 0.22 -8.72 16 13 C -0.15 -6.31 8.16 22.38 0.18 -6.13 16 14 C 0.06 2.46 6.45 39.02 0.25 2.71 16 15 N -0.66 -23.78 5.35 -179.38 -0.96 -24.74 16 16 C 0.24 7.28 5.74 38.25 0.22 7.50 16 17 C -0.17 -3.93 9.97 22.42 0.22 -3.70 16 18 C 0.00 -0.06 9.42 22.24 0.21 0.15 16 19 C -0.27 -6.74 5.38 -19.79 -0.11 -6.85 16 20 C 0.52 12.46 3.02 71.24 0.22 12.68 16 21 F -0.17 -3.48 15.97 44.97 0.72 -2.76 16 22 F -0.18 -4.61 17.05 44.97 0.77 -3.84 16 23 F -0.18 -4.74 17.05 44.97 0.77 -3.97 16 24 C 0.17 4.80 7.12 22.36 0.16 4.96 16 25 F -0.13 -4.07 16.45 44.97 0.74 -3.33 16 26 C -0.21 -6.41 7.40 22.45 0.17 -6.25 16 27 H 0.29 12.78 8.30 -92.71 -0.77 12.01 16 28 H 0.10 5.39 6.09 -2.91 -0.02 5.38 16 29 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 31 H 0.11 4.31 5.54 -2.91 -0.02 4.30 16 32 H 0.41 14.18 7.07 -92.70 -0.65 13.52 16 33 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.18 2.45 7.15 -2.91 -0.02 2.43 16 35 H 0.13 4.57 6.98 -2.91 -0.02 4.55 16 Total: -1.00 -53.49 316.35 7.51 -45.99 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.53 Total: 31.19 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 2.67 Total: -36.04 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.72 Total: -64.52 kcal Atomic # 9 Polarization: -16.90 SS G_CDS: 2.99 Total: -13.91 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -53.49 7.51 -45.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209913199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.318 kcal (2) G-P(sol) polarization free energy of solvation -53.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds