Wall clock time and date at job start Tue Mar 31 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86802 * 120.00411 * 2 1 4 4 H 1.48496 * 109.46787 * 270.00406 * 3 2 1 5 5 H 1.48502 * 109.46882 * 29.99828 * 3 2 1 6 6 H 1.48496 * 109.47292 * 149.99755 * 3 2 1 7 7 C 1.39843 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 196.75814 * 7 2 1 9 9 C 1.41104 * 120.00321 * 16.75630 * 7 2 1 10 10 C 1.40902 * 120.14717 * 25.34197 * 9 7 2 11 11 C 1.36303 * 119.83909 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15758 * 0.02562 * 11 10 9 13 13 N 1.38776 * 119.84476 * 179.97438 * 12 11 10 14 14 C 1.39716 * 119.99886 * 173.80628 * 13 12 11 15 15 C 1.39188 * 120.08869 * 272.13122 * 14 13 12 16 16 F 1.35106 * 120.05916 * 0.02562 * 15 14 13 17 17 C 1.38231 * 119.88394 * 180.02562 * 15 14 13 18 18 C 1.38336 * 120.05034 * 0.02562 * 17 15 14 19 19 C 1.38257 * 120.17906 * 0.25620 * 18 17 15 20 20 C 1.38160 * 120.11571 * 359.48215 * 19 18 17 21 21 C 1.50704 * 120.02753 * 180.25690 * 20 19 18 22 22 F 1.39901 * 109.46829 * 0.25850 * 21 20 19 23 23 F 1.39903 * 109.46903 * 120.25789 * 21 20 19 24 24 F 1.39897 * 109.47040 * 240.25993 * 21 20 19 25 25 C 1.39620 * 120.30698 * 0.24446 * 12 11 10 26 26 C 1.36303 * 120.15239 * 359.48998 * 25 12 11 27 27 H 0.97004 * 120.00433 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08251 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.92338 * 179.97438 * 11 10 9 30 30 H 0.97001 * 120.00423 * 353.79941 * 13 12 11 31 31 H 1.08005 * 119.97802 * 179.97438 * 17 15 14 32 32 H 1.08009 * 119.91232 * 179.97438 * 18 17 15 33 33 H 1.08001 * 119.93925 * 179.72321 * 19 18 17 34 34 H 1.07995 * 119.92058 * 179.74861 * 25 12 11 35 35 H 1.08008 * 120.07358 * 180.26734 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4406 2.6527 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0082 -1.2111 -0.0005 8 1 3.0538 -1.2311 0.2691 9 6 1.3477 -2.4070 -0.3534 10 6 0.2132 -2.3690 -1.1882 11 6 -0.4203 -3.5280 -1.5246 12 6 0.0520 -4.7508 -1.0437 13 7 -0.5984 -5.9268 -1.3899 14 6 -0.0563 -7.1600 -1.0192 15 6 0.8671 -7.7932 -1.8460 16 9 1.2417 -7.2162 -3.0088 17 6 1.4004 -9.0135 -1.4754 18 6 1.0164 -9.6044 -0.2850 19 6 0.0949 -8.9803 0.5353 20 6 -0.4385 -7.7580 0.1744 21 6 -1.4385 -7.0767 1.0729 22 9 -1.6610 -7.8663 2.2061 23 9 -0.9399 -5.8294 1.4641 24 9 -2.6426 -6.9020 0.3824 25 6 1.1722 -4.7952 -0.2115 26 6 1.8187 -3.6444 0.1285 27 1 -0.4851 0.8400 0.0004 28 1 -0.1535 -1.4239 -1.5606 29 1 -1.2902 -3.5005 -2.1640 30 1 -1.4293 -5.8927 -1.8891 31 1 2.1167 -9.5064 -2.1160 32 1 1.4341 -10.5582 0.0022 33 1 -0.2055 -9.4473 1.4616 34 1 1.5298 -5.7441 0.1602 35 1 2.6877 -3.6807 0.7688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210128178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:39 Heat of formation + Delta-G solvation = -137.828520 kcal Electronic energy + Delta-G solvation = -27561.683986 eV Core-core repulsion = 23024.034249 eV Total energy + Delta-G solvation = -4537.649737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90532 -48.79919 -47.50008 -47.23759 -39.65318 -37.73996 -35.19677 -33.12026 -31.74269 -30.21776 -29.29537 -28.21328 -26.01019 -24.58455 -22.65488 -22.15199 -20.97910 -20.39545 -18.56617 -18.30952 -18.16357 -17.27125 -16.87815 -16.44462 -16.40418 -16.10043 -15.31498 -15.18436 -14.73247 -14.27707 -14.18435 -13.89361 -13.80645 -13.51645 -13.46336 -13.41504 -12.95077 -12.79681 -12.68046 -12.39107 -12.36036 -12.05498 -11.86946 -11.53463 -11.30777 -11.06994 -10.88765 -10.54129 -9.75321 -9.50710 -9.42150 -9.29697 -8.80669 -8.75487 -7.52817 -6.72215 -6.55976 -4.11614 0.66270 0.92073 2.78410 2.86143 3.08446 3.13897 3.16092 3.17242 3.29209 3.77462 3.83394 4.02750 4.07304 4.35837 4.63979 4.68973 4.70822 4.88810 4.99596 5.19799 5.62678 5.75447 5.82679 5.93261 5.97065 6.19829 6.22930 6.45881 6.82518 6.98058 7.13744 7.26637 7.48964 7.61054 7.72799 8.10235 8.25537 8.36261 8.44902 8.71722 9.01079 9.08098 10.33007 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.003980 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.746980 B = 7033.141808 C = 7745.544471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.086 3.914 10 C -0.128 4.128 11 C -0.143 4.143 12 C 0.074 3.926 13 N -0.719 5.719 14 C 0.199 3.801 15 C 0.093 3.907 16 F -0.122 7.122 17 C -0.123 4.123 18 C -0.102 4.102 19 C -0.084 4.084 20 C -0.168 4.168 21 C 0.513 3.487 22 F -0.185 7.185 23 F -0.152 7.152 24 F -0.177 7.177 25 C -0.133 4.133 26 C -0.191 4.191 27 H 0.277 0.723 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.403 0.597 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -17.032 -0.761 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.148 4.148 11 C -0.165 4.165 12 C -0.019 4.019 13 N -0.354 5.354 14 C 0.103 3.897 15 C 0.071 3.929 16 F -0.101 7.101 17 C -0.143 4.143 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.171 4.171 21 C 0.459 3.541 22 F -0.166 7.166 23 F -0.133 7.133 24 F -0.159 7.159 25 C -0.155 4.155 26 C -0.211 4.211 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.240 0.760 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.575 -16.828 -0.692 16.916 hybrid contribution -0.074 0.976 -0.166 0.993 sum -1.649 -15.852 -0.858 15.961 Atomic orbital electron populations 1.69849 1.07376 1.28778 1.37048 1.25818 0.94694 1.00987 0.92591 0.86366 0.80455 0.81024 0.79129 1.19475 1.20505 1.18806 1.19408 0.97587 0.91199 1.41319 0.90781 1.17532 0.92044 0.91999 0.90147 1.20905 0.98257 0.96275 0.99404 1.20000 1.01114 0.91601 1.03767 1.17177 0.97135 0.83868 1.03732 1.41263 1.28132 0.99941 1.66073 1.17043 0.93784 0.87711 0.91195 1.18213 0.97672 0.92853 0.84179 1.91544 1.89660 1.84179 1.44682 1.21330 1.00622 0.94099 0.98232 1.20945 0.97229 1.00471 0.93391 1.20993 0.95913 0.93003 1.00345 1.20543 1.02128 0.98013 0.96465 1.18000 0.80087 0.77632 0.78379 1.93132 1.95186 1.74511 1.53797 1.93375 1.86882 1.41906 1.91165 1.93183 1.47866 1.95513 1.79308 1.19791 0.97296 0.96971 1.01434 1.20523 1.02785 0.92606 1.05227 0.91181 0.86109 0.89265 0.76019 0.83942 0.83998 0.83927 0.90034 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.27 10.94 55.54 0.61 -20.66 16 2 C 0.07 1.93 5.15 -17.35 -0.09 1.84 16 3 Si 0.91 19.19 29.59 -169.99 -5.03 14.16 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.59 9.03 -37.90 -0.34 -12.93 16 8 H 0.07 1.94 7.90 -52.49 -0.41 1.53 16 9 C 0.09 2.32 5.57 -106.80 -0.59 1.72 16 10 C -0.13 -3.36 8.63 -39.27 -0.34 -3.70 16 11 C -0.14 -3.35 9.82 -39.76 -0.39 -3.74 16 12 C 0.07 1.62 5.72 -83.69 -0.48 1.14 16 13 N -0.72 -12.86 4.12 -8.25 -0.03 -12.89 16 14 C 0.20 3.12 4.22 -83.68 -0.35 2.77 16 15 C 0.09 1.33 7.31 -39.23 -0.29 1.04 16 16 F -0.12 -1.98 17.08 2.25 0.04 -1.94 16 17 C -0.12 -1.29 10.02 -39.55 -0.40 -1.69 16 18 C -0.10 -0.91 10.04 -39.54 -0.40 -1.31 16 19 C -0.08 -0.90 9.43 -39.60 -0.37 -1.27 16 20 C -0.17 -2.38 5.32 -104.41 -0.56 -2.93 16 21 C 0.51 8.02 2.97 36.01 0.11 8.12 16 22 F -0.18 -2.57 15.97 2.25 0.04 -2.53 16 23 F -0.15 -2.94 14.88 2.25 0.03 -2.90 16 24 F -0.18 -2.80 16.89 2.25 0.04 -2.76 16 25 C -0.13 -3.05 8.12 -39.76 -0.32 -3.38 16 26 C -0.19 -4.80 9.74 -39.27 -0.38 -5.18 16 27 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 28 H 0.12 3.26 6.17 -52.48 -0.32 2.94 16 29 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.40 6.56 8.83 -40.82 -0.36 6.20 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.22 7.15 -52.49 -0.38 0.85 16 34 H 0.08 1.74 6.92 -52.49 -0.36 1.38 16 35 H 0.09 2.20 8.06 -52.48 -0.42 1.77 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -29.10 319.38 -7.36 -36.46 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -2.66 Total: 7.75 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -5.19 Total: -19.50 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.57 Total: -33.55 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 0.15 Total: -10.13 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.10 -7.36 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210128178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.369 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds