Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86802 * 120.00411 * 2 1 4 4 H 1.48496 * 109.46787 * 270.00406 * 3 2 1 5 5 H 1.48502 * 109.46882 * 29.99828 * 3 2 1 6 6 H 1.48496 * 109.47292 * 149.99755 * 3 2 1 7 7 C 1.39843 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 196.75814 * 7 2 1 9 9 C 1.41104 * 120.00321 * 16.75630 * 7 2 1 10 10 C 1.40902 * 120.14717 * 25.34197 * 9 7 2 11 11 C 1.36303 * 119.83909 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15758 * 0.02562 * 11 10 9 13 13 N 1.38776 * 119.84476 * 179.97438 * 12 11 10 14 14 C 1.39716 * 119.99886 * 173.80628 * 13 12 11 15 15 C 1.39188 * 120.08869 * 272.13122 * 14 13 12 16 16 F 1.35106 * 120.05916 * 0.02562 * 15 14 13 17 17 C 1.38231 * 119.88394 * 180.02562 * 15 14 13 18 18 C 1.38336 * 120.05034 * 0.02562 * 17 15 14 19 19 C 1.38257 * 120.17906 * 0.25620 * 18 17 15 20 20 C 1.38160 * 120.11571 * 359.48215 * 19 18 17 21 21 C 1.50704 * 120.02753 * 180.25690 * 20 19 18 22 22 F 1.39901 * 109.46829 * 0.25850 * 21 20 19 23 23 F 1.39903 * 109.46903 * 120.25789 * 21 20 19 24 24 F 1.39897 * 109.47040 * 240.25993 * 21 20 19 25 25 C 1.39620 * 120.30698 * 0.24446 * 12 11 10 26 26 C 1.36303 * 120.15239 * 359.48998 * 25 12 11 27 27 H 0.97004 * 120.00433 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08251 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.92338 * 179.97438 * 11 10 9 30 30 H 0.97001 * 120.00423 * 353.79941 * 13 12 11 31 31 H 1.08005 * 119.97802 * 179.97438 * 17 15 14 32 32 H 1.08009 * 119.91232 * 179.97438 * 18 17 15 33 33 H 1.08001 * 119.93925 * 179.72321 * 19 18 17 34 34 H 1.07995 * 119.92058 * 179.74861 * 25 12 11 35 35 H 1.08008 * 120.07358 * 180.26734 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4406 2.6527 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0082 -1.2111 -0.0005 8 1 3.0538 -1.2311 0.2691 9 6 1.3477 -2.4070 -0.3534 10 6 0.2132 -2.3690 -1.1882 11 6 -0.4203 -3.5280 -1.5246 12 6 0.0520 -4.7508 -1.0437 13 7 -0.5984 -5.9268 -1.3899 14 6 -0.0563 -7.1600 -1.0192 15 6 0.8671 -7.7932 -1.8460 16 9 1.2417 -7.2162 -3.0088 17 6 1.4004 -9.0135 -1.4754 18 6 1.0164 -9.6044 -0.2850 19 6 0.0949 -8.9803 0.5353 20 6 -0.4385 -7.7580 0.1744 21 6 -1.4385 -7.0767 1.0729 22 9 -1.6610 -7.8663 2.2061 23 9 -0.9399 -5.8294 1.4641 24 9 -2.6426 -6.9020 0.3824 25 6 1.1722 -4.7952 -0.2115 26 6 1.8187 -3.6444 0.1285 27 1 -0.4851 0.8400 0.0004 28 1 -0.1535 -1.4239 -1.5606 29 1 -1.2902 -3.5005 -2.1640 30 1 -1.4293 -5.8927 -1.8891 31 1 2.1167 -9.5064 -2.1160 32 1 1.4341 -10.5582 0.0022 33 1 -0.2055 -9.4473 1.4616 34 1 1.5298 -5.7441 0.1602 35 1 2.6877 -3.6807 0.7688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210128178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = -152.196473 kcal Electronic energy + Delta-G solvation = -27562.307027 eV Core-core repulsion = 23024.034249 eV Total energy + Delta-G solvation = -4538.272778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.14712 -49.93059 -48.69410 -48.57944 -40.81447 -39.38910 -36.73940 -34.88343 -32.79531 -31.77408 -31.05605 -29.76082 -27.19526 -26.31804 -23.90610 -23.23961 -22.77511 -22.09108 -19.69334 -19.52053 -19.43518 -19.17964 -18.14748 -18.02804 -17.51062 -17.14824 -16.94758 -16.51501 -15.83955 -15.70547 -15.49633 -15.40743 -15.04634 -14.80088 -14.76859 -14.69089 -14.57295 -14.51452 -13.96301 -13.83713 -13.70048 -13.52362 -13.29752 -13.03912 -12.79298 -12.71838 -12.40730 -12.31071 -11.61621 -11.33341 -11.21303 -10.57501 -10.30258 -9.81122 -9.45561 -8.60526 -8.38581 -6.09688 -0.29242 -0.03973 1.04055 1.14482 1.39694 1.52565 1.55572 1.62367 2.24009 2.25813 2.49488 2.69380 2.80285 2.95486 3.33171 3.40911 3.77450 3.85752 4.00364 4.14621 4.23968 4.37895 4.40196 4.69993 4.94555 4.96434 5.05558 5.10931 5.13819 5.23215 5.35384 5.56206 5.66806 5.73287 5.86511 6.13168 6.33644 6.57439 6.77847 6.89373 7.03672 7.14380 8.44806 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.003980 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.746980 B = 7033.141808 C = 7745.544471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.049 3.951 10 C -0.146 4.146 11 C -0.158 4.158 12 C 0.103 3.897 13 N -0.713 5.713 14 C 0.161 3.839 15 C 0.069 3.931 16 F -0.141 7.141 17 C -0.109 4.109 18 C -0.077 4.077 19 C -0.075 4.075 20 C -0.180 4.180 21 C 0.509 3.491 22 F -0.174 7.174 23 F -0.180 7.180 24 F -0.182 7.182 25 C -0.136 4.136 26 C -0.202 4.202 27 H 0.284 0.716 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.408 0.592 31 H 0.175 0.825 32 H 0.193 0.807 33 H 0.169 0.831 34 H 0.099 0.901 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -20.002 -0.487 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.046 3.954 10 C -0.166 4.166 11 C -0.180 4.180 12 C 0.007 3.993 13 N -0.348 5.348 14 C 0.066 3.934 15 C 0.048 3.952 16 F -0.120 7.120 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.094 4.094 20 C -0.183 4.183 21 C 0.455 3.545 22 F -0.155 7.155 23 F -0.162 7.162 24 F -0.164 7.164 25 C -0.158 4.158 26 C -0.222 4.222 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.245 0.755 31 H 0.193 0.807 32 H 0.210 0.790 33 H 0.187 0.813 34 H 0.117 0.883 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.768 -19.857 -0.423 19.876 hybrid contribution -0.405 1.557 -0.230 1.625 sum -1.172 -18.300 -0.653 18.349 Atomic orbital electron populations 1.69915 1.08802 1.29967 1.37933 1.26642 0.95472 1.04186 0.91642 0.85250 0.79010 0.76335 0.79333 1.18835 1.19486 1.18396 1.19618 0.97680 0.92506 1.43564 0.91202 1.17836 0.93150 0.92957 0.91478 1.20842 0.98904 0.96572 1.00249 1.20210 1.01789 0.91596 1.04366 1.17213 0.95908 0.84970 1.01211 1.41134 1.28059 0.99981 1.65607 1.17255 0.95996 0.87298 0.92803 1.18496 0.98434 0.94464 0.83839 1.91497 1.89937 1.84800 1.45730 1.21765 0.99880 0.92191 0.98951 1.21530 0.94971 1.01392 0.91514 1.21420 0.95194 0.91402 1.01377 1.20486 1.02622 0.99416 0.95780 1.18273 0.80380 0.76893 0.78956 1.93143 1.95159 1.73891 1.53332 1.93317 1.87282 1.44042 1.91536 1.93168 1.48279 1.95529 1.79405 1.19904 0.97444 0.96950 1.01511 1.20705 1.03189 0.92906 1.05380 0.90602 0.87836 0.87323 0.75468 0.80746 0.79008 0.81350 0.88253 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.16 10.94 21.81 0.24 -45.92 16 2 C 0.03 1.75 5.15 85.22 0.44 2.19 16 3 Si 0.98 40.33 29.59 68.60 2.03 42.36 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.50 -28.53 9.03 23.36 0.21 -28.32 16 8 H 0.07 3.84 7.90 -2.91 -0.02 3.82 16 9 C 0.05 2.75 5.57 -21.27 -0.12 2.63 16 10 C -0.15 -8.00 8.63 22.47 0.19 -7.80 16 11 C -0.16 -7.61 9.82 22.15 0.22 -7.39 16 12 C 0.10 4.54 5.72 38.71 0.22 4.76 16 13 N -0.71 -25.39 4.12 -180.01 -0.74 -26.13 16 14 C 0.16 4.85 4.22 38.26 0.16 5.01 16 15 C 0.07 1.83 7.31 22.50 0.16 1.99 16 16 F -0.14 -4.44 17.08 44.97 0.77 -3.67 16 17 C -0.11 -1.79 10.02 22.29 0.22 -1.57 16 18 C -0.08 -0.91 10.04 22.30 0.22 -0.69 16 19 C -0.08 -1.28 9.43 22.26 0.21 -1.07 16 20 C -0.18 -4.70 5.32 -19.73 -0.10 -4.80 16 21 C 0.51 15.37 2.97 71.24 0.21 15.58 16 22 F -0.17 -4.50 15.97 44.97 0.72 -3.78 16 23 F -0.18 -6.99 14.88 44.97 0.67 -6.32 16 24 F -0.18 -5.67 16.89 44.97 0.76 -4.91 16 25 C -0.14 -6.31 8.12 22.15 0.18 -6.13 16 26 C -0.20 -10.45 9.74 22.47 0.22 -10.23 16 27 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 28 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 29 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.41 13.30 8.83 -92.71 -0.82 12.48 16 31 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.17 2.01 7.15 -2.91 -0.02 1.99 16 34 H 0.10 4.19 6.92 -2.91 -0.02 4.17 16 35 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -67.66 319.38 7.45 -60.21 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.36 Total: 24.00 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 2.65 Total: -35.84 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -0.50 Total: -72.05 kcal Atomic # 9 Polarization: -21.60 SS G_CDS: 2.92 Total: -18.68 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -67.66 7.45 -60.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210128178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.990 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds