Wall clock time and date at job start Tue Mar 31 2020 14:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37229 * 119.77950 * 2 1 4 4 C 1.38685 * 120.59816 * 179.76741 * 3 2 1 5 5 C 1.37733 * 119.98360 * 0.50632 * 4 3 2 6 6 C 1.39238 * 120.19572 * 359.74857 * 5 4 3 7 7 S 1.76191 * 131.20953 * 180.02562 * 6 5 4 8 8 C 1.75814 * 90.44079 * 179.97438 * 7 6 5 9 9 O 1.35324 * 124.80584 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99759 * 359.97182 * 9 8 7 11 11 H 1.09008 * 109.47123 * 30.00509 * 10 9 8 12 12 C 1.50700 * 109.47353 * 270.00210 * 10 9 8 13 13 H 1.07998 * 120.00033 * 328.66332 * 12 10 9 14 14 C 1.37879 * 120.00037 * 148.66736 * 12 10 9 15 15 N 1.31510 * 119.99903 * 183.06371 * 14 12 10 16 16 Si 1.86799 * 119.99931 * 3.06473 * 14 12 10 17 17 H 1.48499 * 109.46931 * 84.74575 * 16 14 12 18 18 H 1.48495 * 109.46876 * 204.73998 * 16 14 12 19 19 H 1.48497 * 109.47448 * 324.74414 * 16 14 12 20 20 C 1.50700 * 109.46948 * 149.99878 * 10 9 8 21 21 C 1.38234 * 119.99759 * 38.98962 * 20 10 9 22 22 C 1.38237 * 119.99832 * 179.80621 * 21 20 10 23 23 C 1.38235 * 120.00181 * 0.40194 * 22 21 20 24 24 C 1.38235 * 119.99370 * 359.85097 * 23 22 21 25 25 C 1.38227 * 120.00465 * 359.95903 * 24 23 22 26 26 N 1.28674 * 110.38850 * 359.97438 * 8 7 6 27 27 C 1.34819 * 117.92974 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.47292 * 269.72855 * 1 2 3 29 29 H 1.09001 * 109.47126 * 149.72746 * 1 2 3 30 30 H 1.09000 * 109.47227 * 29.72504 * 1 2 3 31 31 H 1.07999 * 119.69742 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.01008 * 180.27460 * 4 3 2 33 33 H 1.08000 * 119.90070 * 179.77519 * 5 4 3 34 34 H 0.97005 * 120.00217 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99908 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99913 * 180.22704 * 22 21 20 37 37 H 1.07996 * 119.99965 * 179.83367 * 23 22 21 38 38 H 1.08004 * 119.99141 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.99865 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.1911 0.0000 4 6 3.5753 1.2109 0.0048 5 6 4.2806 0.0279 -0.0008 6 6 3.6055 -1.1899 -0.0061 7 16 4.2021 -2.8477 -0.0134 8 6 2.5524 -3.4557 -0.0152 9 8 2.2118 -4.7654 -0.0201 10 6 3.2809 -5.7136 -0.0246 11 1 4.1437 -5.2909 0.4904 12 6 3.6558 -6.0414 -1.4470 13 1 2.9037 -6.0219 -2.2218 14 6 4.9589 -6.3663 -1.7591 15 7 5.2986 -6.5934 -3.0091 16 14 6.2418 -6.4838 -0.4064 17 1 6.1951 -7.8368 0.2038 18 1 7.5903 -6.2464 -0.9813 19 1 5.9600 -5.4617 0.6333 20 6 2.8407 -6.9702 0.6813 21 6 1.5540 -7.4451 0.5089 22 6 1.1514 -8.6000 1.1532 23 6 2.0329 -9.2754 1.9764 24 6 3.3180 -8.7975 2.1528 25 6 3.7218 -7.6449 1.5054 26 7 1.7147 -2.4790 -0.0103 27 6 2.2077 -1.2242 -0.0053 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3634 0.8924 -0.5095 31 1 1.6401 2.1214 0.0004 32 1 4.1020 2.1538 0.0093 33 1 5.3605 0.0449 -0.0007 34 1 6.2154 -6.8215 -3.2288 35 1 0.8641 -6.9154 -0.1313 36 1 0.1473 -8.9731 1.0157 37 1 1.7175 -10.1762 2.4819 38 1 4.0066 -9.3250 2.7963 39 1 4.7257 -7.2714 1.6437 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229929045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:11 Heat of formation + Delta-G solvation = 49.486236 kcal Electronic energy + Delta-G solvation = -24100.644480 eV Core-core repulsion = 20679.187237 eV Total energy + Delta-G solvation = -3421.457243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02235 -39.22736 -37.94661 -35.96864 -33.26450 -32.64536 -31.46675 -30.43115 -29.26066 -27.58491 -26.58425 -24.34478 -23.28390 -22.27366 -21.61241 -21.02749 -20.61270 -17.95695 -17.60834 -17.08791 -16.60824 -15.88326 -15.34556 -15.32671 -14.84796 -14.59173 -14.41590 -13.95082 -13.69297 -13.39959 -13.11450 -13.04003 -12.83280 -12.64475 -12.41877 -12.22366 -12.17310 -11.98948 -11.52792 -11.33235 -11.03719 -11.02935 -10.60879 -10.51534 -10.16172 -10.03109 -9.70757 -9.56365 -9.12018 -9.02837 -8.42541 -8.16729 -7.87461 -7.69198 -6.51530 -4.58342 0.88030 1.32036 1.45251 1.82755 1.90058 2.03643 2.75054 2.97964 3.02385 3.08830 3.15268 3.90199 4.00285 4.30207 4.76794 4.79820 4.88145 5.02423 5.32270 5.32970 5.36713 5.43856 5.48125 5.58945 5.62960 5.76102 5.79366 5.86212 5.88550 6.05721 6.10287 6.25260 6.37670 6.41373 6.43605 6.53749 6.58821 6.90421 6.91440 6.94190 6.96830 7.10355 7.36853 7.48546 7.97990 8.18984 8.58196 9.03182 10.59075 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.004473 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.168622 B = 6258.481176 C = 7395.729856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.051 4.051 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.066 4.066 6 C -0.193 4.193 7 S 0.033 5.967 8 C 0.358 3.642 9 O -0.262 6.262 10 C 0.206 3.794 11 H 0.055 0.945 12 C -0.537 4.537 13 H 0.094 0.906 14 C 0.096 3.904 15 N -0.863 5.863 16 Si 0.845 3.155 17 H -0.257 1.257 18 H -0.276 1.276 19 H -0.253 1.253 20 C -0.045 4.045 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.138 4.138 24 C -0.119 4.119 25 C -0.128 4.128 26 N -0.517 5.517 27 C 0.127 3.873 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.274 0.726 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 8.149 8.743 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.054 4.054 3 C -0.130 4.130 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.312 4.312 7 S 0.283 5.717 8 C 0.037 3.963 9 O -0.167 6.167 10 C 0.151 3.849 11 H 0.073 0.927 12 C -0.574 4.574 13 H 0.112 0.888 14 C -0.112 4.112 15 N -0.497 5.497 16 Si 0.671 3.329 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.178 1.178 20 C -0.046 4.046 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.137 4.137 25 C -0.146 4.146 26 N -0.249 5.249 27 C 0.007 3.993 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.691 7.155 8.581 11.492 hybrid contribution 0.697 0.310 0.375 0.850 sum -1.994 7.465 8.955 11.828 Atomic orbital electron populations 1.20695 0.90489 1.02911 1.02324 1.19396 0.96121 0.89421 1.00451 1.20711 0.94223 0.96714 1.01364 1.20908 0.94069 0.97221 1.02285 1.20231 0.99417 0.89527 0.99738 1.23606 0.97198 0.98079 1.12342 1.85689 1.11316 0.96868 1.77834 1.25354 0.89235 0.89257 0.92412 1.85870 1.37575 1.08270 1.84992 1.19966 0.83817 0.82907 0.98202 0.92735 1.21094 0.96463 1.49397 0.90403 0.88779 1.24831 0.97608 0.93337 0.95394 1.69829 1.19582 1.43277 1.17043 0.87389 0.82114 0.80365 0.82991 1.18183 1.20127 1.17800 1.19971 0.94021 0.97244 0.93382 1.20934 0.95775 0.95739 0.98829 1.21083 0.99359 0.95715 0.97804 1.20965 0.94165 1.00146 1.00341 1.20920 0.96278 0.96327 1.00195 1.20873 0.99165 0.96924 0.97668 1.65911 1.34859 0.97095 1.27016 1.18636 0.89025 0.90074 1.01525 0.91284 0.90599 0.91788 0.85355 0.85347 0.85747 0.91542 0.85710 0.86505 0.86732 0.86591 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.94 36.01 0.36 -1.00 16 2 C -0.05 -0.77 5.93 -103.92 -0.62 -1.38 16 3 C -0.11 -1.33 9.62 -39.78 -0.38 -1.72 16 4 C -0.12 -1.48 10.05 -39.60 -0.40 -1.88 16 5 C -0.07 -0.96 10.06 -39.39 -0.40 -1.36 16 6 C -0.19 -3.50 6.52 -38.62 -0.25 -3.75 16 7 S 0.03 0.67 21.43 -107.50 -2.30 -1.63 16 8 C 0.36 7.92 8.38 51.44 0.43 8.35 16 9 O -0.26 -6.05 9.11 -17.67 -0.16 -6.21 16 10 C 0.21 4.78 1.74 -29.03 -0.05 4.73 16 11 H 0.06 1.26 3.58 -51.92 -0.19 1.07 16 12 C -0.54 -14.23 9.18 -34.44 -0.32 -14.55 16 13 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 14 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 15 N -0.86 -24.44 13.96 55.43 0.77 -23.67 16 16 Si 0.85 19.30 24.41 -169.99 -4.15 15.15 16 17 H -0.26 -5.63 6.75 56.52 0.38 -5.25 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.25 -5.40 6.10 56.52 0.34 -5.06 16 20 C -0.05 -0.97 4.89 -104.63 -0.51 -1.48 16 21 C -0.09 -1.85 9.36 -39.58 -0.37 -2.22 16 22 C -0.12 -2.01 10.05 -39.58 -0.40 -2.40 16 23 C -0.14 -2.14 10.05 -39.58 -0.40 -2.54 16 24 C -0.12 -1.99 10.05 -39.59 -0.40 -2.38 16 25 C -0.13 -2.52 8.62 -39.59 -0.34 -2.86 16 26 N -0.52 -10.92 10.30 -11.85 -0.12 -11.05 16 27 C 0.13 2.38 6.72 -84.89 -0.57 1.81 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.12 2.44 7.75 -52.49 -0.41 2.03 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.11 2.14 5.35 -52.48 -0.28 1.86 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -29.46 341.29 -9.82 -39.28 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.30 Total: 5.15 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -4.71 Total: -22.16 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.65 Total: -34.72 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.16 Total: -6.21 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.15 Total: 15.15 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.30 Total: -1.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.46 -9.82 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229929045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.771 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds