Wall clock time and date at job start Tue Mar 31 2020 14:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37229 * 119.77950 * 2 1 4 4 C 1.38685 * 120.59816 * 179.76741 * 3 2 1 5 5 C 1.37733 * 119.98360 * 0.50632 * 4 3 2 6 6 C 1.39238 * 120.19572 * 359.74857 * 5 4 3 7 7 S 1.76191 * 131.20953 * 180.02562 * 6 5 4 8 8 C 1.75814 * 90.44079 * 179.97438 * 7 6 5 9 9 O 1.35324 * 124.80584 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99759 * 359.97182 * 9 8 7 11 11 H 1.09008 * 109.47123 * 30.00509 * 10 9 8 12 12 C 1.50700 * 109.47353 * 270.00210 * 10 9 8 13 13 H 1.07998 * 120.00033 * 328.66332 * 12 10 9 14 14 C 1.37879 * 120.00037 * 148.66736 * 12 10 9 15 15 N 1.31510 * 119.99903 * 183.06371 * 14 12 10 16 16 Si 1.86799 * 119.99931 * 3.06473 * 14 12 10 17 17 H 1.48499 * 109.46931 * 84.74575 * 16 14 12 18 18 H 1.48495 * 109.46876 * 204.73998 * 16 14 12 19 19 H 1.48497 * 109.47448 * 324.74414 * 16 14 12 20 20 C 1.50700 * 109.46948 * 149.99878 * 10 9 8 21 21 C 1.38234 * 119.99759 * 38.98962 * 20 10 9 22 22 C 1.38237 * 119.99832 * 179.80621 * 21 20 10 23 23 C 1.38235 * 120.00181 * 0.40194 * 22 21 20 24 24 C 1.38235 * 119.99370 * 359.85097 * 23 22 21 25 25 C 1.38227 * 120.00465 * 359.95903 * 24 23 22 26 26 N 1.28674 * 110.38850 * 359.97438 * 8 7 6 27 27 C 1.34819 * 117.92974 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.47292 * 269.72855 * 1 2 3 29 29 H 1.09001 * 109.47126 * 149.72746 * 1 2 3 30 30 H 1.09000 * 109.47227 * 29.72504 * 1 2 3 31 31 H 1.07999 * 119.69742 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.01008 * 180.27460 * 4 3 2 33 33 H 1.08000 * 119.90070 * 179.77519 * 5 4 3 34 34 H 0.97005 * 120.00217 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99908 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99913 * 180.22704 * 22 21 20 37 37 H 1.07996 * 119.99965 * 179.83367 * 23 22 21 38 38 H 1.08004 * 119.99141 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.99865 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.1911 0.0000 4 6 3.5753 1.2109 0.0048 5 6 4.2806 0.0279 -0.0008 6 6 3.6055 -1.1899 -0.0061 7 16 4.2021 -2.8477 -0.0134 8 6 2.5524 -3.4557 -0.0152 9 8 2.2118 -4.7654 -0.0201 10 6 3.2809 -5.7136 -0.0246 11 1 4.1437 -5.2909 0.4904 12 6 3.6558 -6.0414 -1.4470 13 1 2.9037 -6.0219 -2.2218 14 6 4.9589 -6.3663 -1.7591 15 7 5.2986 -6.5934 -3.0091 16 14 6.2418 -6.4838 -0.4064 17 1 6.1951 -7.8368 0.2038 18 1 7.5903 -6.2464 -0.9813 19 1 5.9600 -5.4617 0.6333 20 6 2.8407 -6.9702 0.6813 21 6 1.5540 -7.4451 0.5089 22 6 1.1514 -8.6000 1.1532 23 6 2.0329 -9.2754 1.9764 24 6 3.3180 -8.7975 2.1528 25 6 3.7218 -7.6449 1.5054 26 7 1.7147 -2.4790 -0.0103 27 6 2.2077 -1.2242 -0.0053 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3634 0.8924 -0.5095 31 1 1.6401 2.1214 0.0004 32 1 4.1020 2.1538 0.0093 33 1 5.3605 0.0449 -0.0007 34 1 6.2154 -6.8215 -3.2288 35 1 0.8641 -6.9154 -0.1313 36 1 0.1473 -8.9731 1.0157 37 1 1.7175 -10.1762 2.4819 38 1 4.0066 -9.3250 2.7963 39 1 4.7257 -7.2714 1.6437 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229929045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:11 Heat of formation + Delta-G solvation = 31.046892 kcal Electronic energy + Delta-G solvation = -24101.444070 eV Core-core repulsion = 20679.187237 eV Total energy + Delta-G solvation = -3422.256833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39455 -40.73518 -39.41168 -37.34069 -35.18960 -33.75943 -33.09352 -31.81357 -30.52719 -29.31366 -27.73011 -25.84561 -24.93604 -23.67017 -22.88084 -22.46299 -22.02261 -19.58339 -19.38992 -18.59305 -17.99762 -17.23090 -17.03934 -16.63825 -16.37790 -15.95049 -15.79104 -15.32392 -15.06117 -14.96431 -14.75510 -14.33913 -14.30664 -14.09515 -13.80534 -13.55015 -13.40345 -13.21633 -13.05024 -12.70654 -12.44788 -12.42652 -12.13387 -12.03452 -11.76403 -11.65484 -11.36890 -11.02981 -10.91725 -10.69521 -9.81636 -9.62730 -9.31041 -9.00742 -8.56519 -6.68508 -0.49468 -0.07558 0.16600 0.41066 0.50306 0.58351 1.16532 1.18481 1.25536 1.35847 1.59057 2.09016 2.69357 2.74288 2.95783 3.47668 3.68078 3.81796 4.00517 4.05324 4.13385 4.20675 4.27316 4.31202 4.31809 4.52350 4.63741 4.68628 4.72837 4.81217 4.87394 4.94392 5.09530 5.13308 5.17771 5.27287 5.35158 5.44830 5.52775 5.57649 5.60926 5.73632 5.86455 6.03232 6.13186 6.37376 6.65941 6.98113 8.58834 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.004473 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.168622 B = 6258.481176 C = 7395.729856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.060 4.060 3 C -0.095 4.095 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.199 4.199 7 S 0.000 6.000 8 C 0.321 3.679 9 O -0.281 6.281 10 C 0.218 3.782 11 H 0.056 0.944 12 C -0.541 4.541 13 H 0.041 0.959 14 C 0.050 3.950 15 N -0.915 5.915 16 Si 0.896 3.104 17 H -0.237 1.237 18 H -0.271 1.271 19 H -0.237 1.237 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.147 4.147 26 N -0.524 5.524 27 C 0.079 3.921 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.145 0.855 34 H 0.277 0.723 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 10.038 11.515 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.317 4.317 7 S 0.249 5.751 8 C 0.000 4.000 9 O -0.187 6.187 10 C 0.162 3.838 11 H 0.073 0.927 12 C -0.578 4.578 13 H 0.060 0.940 14 C -0.153 4.153 15 N -0.551 5.551 16 Si 0.718 3.282 17 H -0.160 1.160 18 H -0.196 1.196 19 H -0.162 1.162 20 C -0.080 4.080 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.165 4.165 26 N -0.255 5.255 27 C -0.038 4.038 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.194 0.806 32 H 0.196 0.804 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.532 9.072 11.367 14.762 hybrid contribution 0.450 0.006 -0.479 0.657 sum -2.083 9.078 10.888 14.329 Atomic orbital electron populations 1.20736 0.89080 1.03308 1.03069 1.19904 0.97477 0.88996 0.99908 1.21316 0.94691 0.97178 0.98391 1.21552 0.94176 0.97948 0.97859 1.20689 1.00810 0.88925 1.00088 1.23792 0.97068 0.97508 1.13371 1.85457 1.11089 0.99834 1.78672 1.25452 0.90203 0.88977 0.95371 1.85791 1.37713 1.09186 1.85991 1.19760 0.84111 0.83749 0.96131 0.92702 1.21061 0.95631 1.49637 0.91518 0.94048 1.25559 0.99476 0.92674 0.97559 1.69962 1.20286 1.45574 1.19290 0.86589 0.79174 0.81810 0.80659 1.16020 1.19645 1.16154 1.19973 0.95577 0.96843 0.95573 1.20981 0.95267 0.97475 0.99954 1.21459 1.01170 0.94178 0.96735 1.21501 0.93174 1.00755 0.98763 1.21390 0.97516 0.95013 0.99415 1.21057 0.98934 0.98271 0.98281 1.65852 1.35732 0.98240 1.25716 1.19139 0.89956 0.90166 1.04586 0.90266 0.93372 0.88214 0.80587 0.80411 0.83732 0.91328 0.87580 0.83341 0.82165 0.82864 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 9.94 71.24 0.71 -1.77 16 2 C -0.06 -1.69 5.93 -19.41 -0.12 -1.81 16 3 C -0.10 -1.87 9.62 22.14 0.21 -1.66 16 4 C -0.09 -1.79 10.05 22.26 0.22 -1.57 16 5 C -0.08 -2.19 10.06 22.39 0.23 -1.96 16 6 C -0.20 -7.30 6.52 22.89 0.15 -7.15 16 7 S 0.00 0.02 21.43 -56.49 -1.21 -1.19 16 8 C 0.32 15.44 8.38 130.71 1.10 16.54 16 9 O -0.28 -14.28 9.11 -86.12 -0.78 -15.07 16 10 C 0.22 10.88 1.74 29.10 0.05 10.93 16 11 H 0.06 2.70 3.58 -2.38 -0.01 2.69 16 12 C -0.54 -31.31 9.18 25.60 0.23 -31.07 16 13 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 14 C 0.05 2.86 5.47 84.66 0.46 3.32 16 15 N -0.91 -55.22 13.96 21.45 0.30 -54.92 16 16 Si 0.90 40.97 24.41 68.60 1.67 42.65 16 17 H -0.24 -9.97 6.75 99.48 0.67 -9.30 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.24 -10.14 6.10 99.48 0.61 -9.53 16 20 C -0.08 -3.53 4.89 -19.87 -0.10 -3.63 16 21 C -0.12 -4.86 9.36 22.27 0.21 -4.65 16 22 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 23 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.15 -5.73 8.62 22.27 0.19 -5.54 16 26 N -0.52 -23.68 10.30 -306.22 -3.15 -26.84 16 27 C 0.08 3.03 6.72 39.76 0.27 3.30 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.40 7.91 -2.39 -0.02 1.38 16 30 H 0.10 1.60 8.08 -2.39 -0.02 1.59 16 31 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.28 15.45 8.31 -92.70 -0.77 14.68 16 35 H 0.11 4.58 7.75 -2.91 -0.02 4.56 16 36 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.11 4.20 5.35 -2.91 -0.02 4.18 16 Total: -1.00 -74.24 341.29 2.26 -71.98 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.95 Total: 20.09 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.49 Total: -36.69 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.86 Total: -81.76 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.78 Total: -15.07 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.67 Total: 42.65 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.21 Total: -1.19 kcal Total: -74.24 2.26 -71.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229929045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.022 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds