Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38343 * 119.87644 * 2 1 4 4 C 1.37991 * 120.12118 * 179.70042 * 3 2 1 5 5 C 1.39370 * 119.87734 * 0.57637 * 4 3 2 6 6 C 1.48378 * 120.12100 * 179.69792 * 5 4 3 7 7 C 1.39013 * 120.41952 * 64.72676 * 6 5 4 8 8 C 1.40948 * 118.12897 * 180.02562 * 7 6 5 9 9 C 1.41376 * 120.57748 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00327 * 203.54853 * 9 8 7 11 11 C 1.39906 * 119.99515 * 23.54009 * 9 8 7 12 12 N 1.30863 * 120.00072 * 17.60964 * 11 9 8 13 13 Si 1.86802 * 119.99760 * 197.60175 * 11 9 8 14 14 H 1.48506 * 109.46855 * 94.69729 * 13 11 9 15 15 H 1.48505 * 109.47187 * 214.69693 * 13 11 9 16 16 H 1.48499 * 109.47269 * 334.69937 * 13 11 9 17 17 C 1.40803 * 118.85330 * 0.02562 * 8 7 6 18 18 N 1.31494 * 120.69729 * 359.97438 * 17 8 7 19 19 C 1.32165 * 122.07850 * 359.97438 * 18 17 8 20 20 F 1.35102 * 119.46140 * 179.97438 * 19 18 17 21 21 C 1.39321 * 119.75598 * 359.42491 * 5 4 3 22 22 C 1.50696 * 120.06225 * 180.29706 * 21 5 4 23 23 F 1.39903 * 109.47050 * 179.97438 * 22 21 5 24 24 F 1.39891 * 109.47454 * 300.00011 * 22 21 5 25 25 F 1.39905 * 109.47120 * 60.00322 * 22 21 5 26 26 C 1.38046 * 119.87487 * 0.27387 * 21 5 4 27 27 H 1.09003 * 109.46740 * 270.01929 * 1 2 3 28 28 H 1.08996 * 109.47238 * 30.02042 * 1 2 3 29 29 H 1.08996 * 109.47109 * 150.02823 * 1 2 3 30 30 H 1.08005 * 119.93866 * 359.97438 * 3 2 1 31 31 H 1.08006 * 120.06487 * 180.29286 * 4 3 2 32 32 H 1.08003 * 120.93283 * 0.04549 * 7 6 5 33 33 H 0.96996 * 119.99988 * 179.97438 * 12 11 9 34 34 H 1.08001 * 119.65334 * 179.72339 * 17 8 7 35 35 H 1.07996 * 119.93872 * 179.97438 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1996 0.0000 4 6 3.5760 1.2055 0.0062 5 6 4.2755 0.0000 0.0004 6 6 5.7593 0.0001 0.0003 7 6 6.4632 0.5067 1.0867 8 6 7.8715 0.4835 1.0353 9 6 8.6388 0.9848 2.1117 10 1 9.6519 1.3191 1.9432 11 6 8.0857 1.0482 3.3952 12 7 7.0186 0.3474 3.6831 13 14 8.8704 2.1329 4.6979 14 1 8.1907 3.4531 4.7178 15 1 8.7348 1.4862 6.0279 16 1 10.3094 2.3217 4.3837 17 6 8.5011 -0.0477 -0.1066 18 7 7.7899 -0.5152 -1.1090 19 6 6.4684 -0.5102 -1.0944 20 9 5.7903 -1.0035 -2.1537 21 6 3.5764 -1.2051 0.0004 22 6 4.3257 -2.5125 0.0009 23 9 3.4132 -3.5730 0.0014 24 9 5.1301 -2.5895 -1.1411 25 9 5.1294 -2.5890 1.1435 26 6 2.1959 -1.1992 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6531 2.1332 -0.0004 31 1 4.1131 2.1425 0.0110 32 1 5.9454 0.9065 1.9461 33 1 6.6354 0.3911 4.5731 34 1 9.5796 -0.0678 -0.1616 35 1 1.6530 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242561444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = -159.241063 kcal Electronic energy + Delta-G solvation = -28212.380053 eV Core-core repulsion = 23673.801799 eV Total energy + Delta-G solvation = -4538.578254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.19459 -49.44629 -48.69036 -48.55527 -40.84941 -39.79334 -36.03511 -35.02616 -32.97995 -32.32649 -31.48538 -27.73953 -27.38074 -27.01440 -24.28871 -23.42428 -23.15451 -21.97869 -19.57860 -19.54556 -19.43735 -18.70459 -18.47015 -17.81130 -17.34819 -16.87619 -16.53995 -16.29975 -15.65300 -15.45342 -15.32568 -15.17497 -15.02762 -14.85344 -14.67697 -14.58546 -14.53810 -14.11671 -13.97360 -13.74354 -13.65829 -13.55731 -13.11123 -13.06390 -12.97551 -12.81547 -12.50744 -12.26019 -12.15748 -11.79808 -11.25010 -10.45107 -10.35216 -10.22252 -9.73484 -9.33379 -8.79603 -6.51147 -0.16498 0.12966 0.53846 0.80104 1.41565 1.49386 1.56473 1.67788 2.16731 2.43292 2.54815 2.72261 3.04646 3.26295 3.41270 3.43470 3.58013 3.85734 3.94680 4.18736 4.25571 4.30911 4.51314 4.60433 4.73939 4.85348 4.90551 4.91318 4.98659 5.10892 5.19904 5.26187 5.33228 5.46234 5.54166 5.69309 5.83240 5.89862 6.33173 6.58602 6.62850 7.30945 8.14727 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.005333 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.399938 B = 5248.613945 C = 6027.646677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.113 4.113 5 C -0.006 4.006 6 C -0.113 4.113 7 C -0.102 4.102 8 C 0.034 3.966 9 C -0.458 4.458 10 H 0.098 0.902 11 C 0.036 3.964 12 N -0.807 5.807 13 Si 0.992 3.008 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.253 1.253 17 C -0.004 4.004 18 N -0.504 5.504 19 C 0.149 3.851 20 F -0.139 7.139 21 C -0.183 4.183 22 C 0.494 3.506 23 F -0.176 7.176 24 F -0.174 7.174 25 F -0.188 7.188 26 C -0.080 4.080 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.171 0.829 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.296 0.704 34 H 0.156 0.844 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 2.770 -0.119 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.096 4.096 4 C -0.131 4.131 5 C -0.007 4.007 6 C -0.117 4.117 7 C -0.127 4.127 8 C 0.029 3.971 9 C -0.486 4.486 10 H 0.116 0.884 11 C -0.182 4.182 12 N -0.431 5.431 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.165 4.165 18 N -0.216 5.216 19 C -0.005 4.005 20 F -0.118 7.118 21 C -0.185 4.185 22 C 0.440 3.560 23 F -0.158 7.158 24 F -0.155 7.155 25 F -0.169 7.169 26 C -0.098 4.098 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.188 0.812 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.652 2.284 -0.707 12.876 hybrid contribution 0.566 -0.168 0.918 1.091 sum -12.086 2.116 0.211 12.272 Atomic orbital electron populations 1.20870 0.87144 1.04560 1.03831 1.20348 0.98529 0.91371 0.98494 1.21570 0.92545 0.99684 0.95821 1.21408 0.95406 0.96240 1.00082 1.18537 0.91162 0.93523 0.97431 1.19298 0.92685 1.04619 0.95088 1.21636 0.93923 1.00946 0.96203 1.18802 0.92984 0.91084 0.94224 1.19929 1.01170 1.35399 0.92084 0.88356 1.26933 0.94768 0.94635 1.01847 1.69847 1.19304 1.30142 1.23766 0.85027 0.79873 0.78144 0.75829 1.18295 1.19463 1.17609 1.22593 0.98688 1.03938 0.91272 1.66259 1.06692 1.17359 1.31314 1.17676 0.86917 1.09131 0.86766 1.91424 1.78125 1.86354 1.55942 1.20064 0.95848 0.90398 1.12155 1.18679 0.77745 0.85684 0.73893 1.93106 1.66534 1.59834 1.96308 1.93337 1.74761 1.96632 1.50789 1.93228 1.75281 1.96764 1.51639 1.21058 0.90370 1.00828 0.97511 0.89573 0.89229 0.90331 0.81172 0.84525 0.84958 0.89252 0.82724 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.97 5.88 -19.82 -0.12 -2.09 16 3 C -0.08 -1.85 9.68 22.24 0.22 -1.63 16 4 C -0.11 -3.66 9.74 22.48 0.22 -3.44 16 5 C -0.01 -0.23 5.01 -20.04 -0.10 -0.33 16 6 C -0.11 -5.46 4.07 -19.95 -0.08 -5.54 16 7 C -0.10 -5.14 8.50 23.12 0.20 -4.94 16 8 C 0.03 1.74 5.59 -21.22 -0.12 1.62 16 9 C -0.46 -22.17 9.08 23.45 0.21 -21.95 16 10 H 0.10 4.43 7.90 -2.91 -0.02 4.41 16 11 C 0.04 1.64 5.17 85.24 0.44 2.08 16 12 N -0.81 -38.61 10.92 21.82 0.24 -38.37 16 13 Si 0.99 33.82 29.59 68.60 2.03 35.85 16 14 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 15 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 16 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 17 C 0.00 -0.18 10.96 85.37 0.94 0.75 16 18 N -0.50 -26.65 10.33 -193.74 -2.00 -28.65 16 19 C 0.15 7.65 6.95 85.08 0.59 8.24 16 20 F -0.14 -6.94 13.48 44.97 0.61 -6.33 16 21 C -0.18 -6.92 5.34 -19.65 -0.10 -7.02 16 22 C 0.49 20.46 2.88 71.23 0.21 20.67 16 23 F -0.18 -6.24 15.98 44.97 0.72 -5.52 16 24 F -0.17 -7.99 11.91 44.97 0.54 -7.46 16 25 F -0.19 -8.85 16.52 44.97 0.74 -8.11 16 26 C -0.08 -2.27 9.07 22.24 0.20 -2.07 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 29 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.13 6.74 6.19 -2.91 -0.02 6.72 16 33 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 34 H 0.16 7.00 8.06 -2.91 -0.02 6.98 16 35 H 0.15 3.63 7.15 -2.91 -0.02 3.61 16 Total: -1.00 -62.99 316.00 7.44 -55.55 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.16 Total: 19.40 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.41 Total: -16.36 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -1.76 Total: -67.02 kcal Atomic # 9 Polarization: -30.02 SS G_CDS: 2.60 Total: -27.42 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Total: -62.99 7.44 -55.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242561444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.690 kcal (2) G-P(sol) polarization free energy of solvation -62.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds