Wall clock time and date at job start Tue Mar 31 2020 14:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47286 * 300.00662 * 3 2 1 6 6 H 1.48498 * 109.46875 * 60.00518 * 3 2 1 7 7 C 1.40042 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00146 * 159.63738 * 7 2 1 9 9 C 1.40757 * 119.99986 * 339.63603 * 7 2 1 10 10 C 1.41047 * 120.34930 * 323.71371 * 9 7 2 11 11 F 1.35102 * 120.09713 * 0.02787 * 10 9 7 12 12 C 1.37693 * 119.80171 * 180.27807 * 10 9 7 13 13 C 1.38862 * 120.54649 * 359.72696 * 12 10 9 14 14 C 1.38060 * 120.72653 * 0.04365 * 13 12 10 15 15 C 1.39174 * 120.16721 * 359.95514 * 14 13 12 16 16 C 1.47706 * 120.26959 * 180.02562 * 15 14 13 17 17 C 1.39638 * 120.20104 * 65.25174 * 16 15 14 18 18 C 1.37856 * 119.92665 * 180.27839 * 17 16 15 19 19 C 1.50699 * 119.83484 * 179.74369 * 18 17 16 20 20 F 1.39903 * 109.46840 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.47261 * 299.97399 * 19 18 17 22 22 F 1.39899 * 109.47417 * 59.97989 * 19 18 17 23 23 C 1.38548 * 120.32436 * 359.72051 * 18 17 16 24 24 C 1.38120 * 120.40365 * 0.02562 * 23 18 17 25 25 C 1.38790 * 120.06588 * 359.97438 * 24 23 18 26 26 N 1.39241 * 120.16115 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99668 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.72535 * 179.75018 * 12 10 9 29 29 H 1.07993 * 119.63572 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.91905 * 179.97438 * 14 13 12 31 31 H 1.08003 * 120.03201 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.80258 * 180.02562 * 23 18 17 33 33 H 1.07993 * 119.97084 * 179.97438 * 24 23 18 34 34 H 0.97001 * 120.00506 * 359.97438 * 26 25 24 35 35 H 0.97004 * 119.99723 * 179.72686 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0084 -1.2128 -0.0005 8 1 3.0377 -1.2420 -0.3260 9 6 1.3705 -2.3939 0.4231 10 6 0.4415 -2.3610 1.4839 11 9 0.1579 -1.1926 2.1002 12 6 -0.1715 -3.5241 1.8930 13 6 0.1127 -4.7300 1.2659 14 6 1.0147 -4.7869 0.2223 15 6 1.6517 -3.6296 -0.2155 16 6 2.6167 -3.6878 -1.3323 17 6 2.1869 -4.0353 -2.6146 18 6 3.0935 -4.0935 -3.6516 19 6 2.6284 -4.4743 -5.0335 20 9 3.7177 -4.4646 -5.9113 21 9 2.0677 -5.7556 -5.0002 22 9 1.6681 -3.5563 -5.4720 23 6 4.4298 -3.8031 -3.4296 24 6 4.8688 -3.4527 -2.1677 25 6 3.9703 -3.3890 -1.1118 26 7 4.4105 -3.0355 0.1610 27 1 -0.4849 0.8400 0.0004 28 1 -0.8797 -3.4981 2.7081 29 1 -0.3770 -5.6332 1.5984 30 1 1.2264 -5.7319 -0.2558 31 1 1.1463 -4.2630 -2.7928 32 1 5.1327 -3.8509 -4.2482 33 1 5.9121 -3.2282 -2.0024 34 1 5.3472 -2.8335 0.3116 35 1 3.7798 -2.9879 0.8965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243007371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:35 Heat of formation + Delta-G solvation = -155.629393 kcal Electronic energy + Delta-G solvation = -27523.335211 eV Core-core repulsion = 22984.913571 eV Total energy + Delta-G solvation = -4538.421640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.77995 -47.32927 -47.21800 -47.07451 -39.33000 -37.06354 -34.47247 -33.69846 -31.67419 -29.74947 -29.60279 -28.06871 -25.36294 -24.79591 -22.92014 -21.51906 -20.98453 -20.05952 -18.09927 -18.06801 -17.81281 -17.44713 -16.56126 -16.36958 -15.64723 -15.38830 -14.63318 -14.33294 -14.19882 -14.15848 -13.85093 -13.79476 -13.71445 -13.53244 -13.46974 -13.42460 -13.00602 -12.88153 -12.82535 -12.67589 -11.89789 -11.58415 -11.44397 -11.39323 -11.07452 -10.97798 -10.75496 -10.61432 -10.28053 -10.21039 -9.55363 -9.16170 -8.48358 -7.69249 -7.32764 -7.02545 -6.93252 -4.55076 1.68106 1.79873 2.50185 2.64496 3.03056 3.06196 3.06813 3.11577 3.86492 4.06993 4.19717 4.39106 4.44537 4.48908 4.87905 5.15789 5.29028 5.33101 5.64817 5.85110 5.93587 5.98042 6.08154 6.24985 6.41202 6.47601 6.59398 6.68077 6.84259 6.92191 7.04491 7.13246 7.36758 7.46770 7.64718 7.70614 7.92235 8.00393 8.22287 8.29765 8.61940 8.70933 10.05526 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.005089 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.635241 B = 5500.786897 C = 6233.047544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.094 0.906 9 C 0.100 3.900 10 C 0.038 3.962 11 F -0.143 7.143 12 C -0.132 4.132 13 C -0.216 4.216 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.055 4.055 17 C -0.020 4.020 18 C -0.252 4.252 19 C 0.514 3.486 20 F -0.187 7.187 21 F -0.185 7.185 22 F -0.182 7.182 23 C -0.041 4.041 24 C -0.212 4.212 25 C 0.260 3.740 26 N -0.856 5.856 27 H 0.284 0.716 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.392 0.608 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 -5.130 -3.262 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.112 0.888 9 C 0.097 3.903 10 C 0.017 3.983 11 F -0.122 7.122 12 C -0.151 4.151 13 C -0.235 4.235 14 C -0.099 4.099 15 C -0.156 4.156 16 C -0.060 4.060 17 C -0.040 4.040 18 C -0.256 4.256 19 C 0.460 3.540 20 F -0.168 7.168 21 F -0.166 7.166 22 F -0.163 7.163 23 C -0.060 4.060 24 C -0.235 4.235 25 C 0.152 3.848 26 N -0.392 5.392 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.220 0.780 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.729 -4.932 -3.278 8.964 hybrid contribution 0.060 1.147 0.128 1.155 sum 6.789 -3.785 -3.150 8.387 Atomic orbital electron populations 1.69763 1.07854 1.29991 1.31335 1.25851 0.94588 1.01322 0.92426 0.86301 0.80999 0.81197 0.78635 1.18350 1.19931 1.19627 1.19514 0.99828 0.90934 1.38524 0.88774 1.17491 0.90809 0.92529 0.89509 1.17766 1.03828 0.80336 0.96329 1.91338 1.92555 1.47140 1.81161 1.20665 1.00729 0.92648 1.01070 1.20064 1.05283 0.96054 1.02143 1.20651 0.96519 0.96135 0.96552 1.18175 1.04778 0.93496 0.99141 1.18022 0.90778 1.04017 0.93148 1.20683 0.98320 0.94398 0.90555 1.19396 0.96396 1.18224 0.91543 1.18370 0.74596 0.74339 0.86727 1.93102 1.55122 1.96348 1.72272 1.93173 1.85892 1.40679 1.96890 1.93199 1.65192 1.66804 1.91134 1.20486 0.93451 0.95247 0.96791 1.20327 0.98919 1.12084 0.92122 1.18021 0.92120 0.89125 0.85584 1.42644 1.12064 1.76044 1.08411 0.90479 0.88178 0.88305 0.88460 0.85691 0.85677 0.85970 0.78048 0.75794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.65 11.12 55.55 0.62 -19.03 16 2 C 0.08 1.95 4.49 -17.31 -0.08 1.87 16 3 Si 0.90 18.52 29.61 -169.99 -5.03 13.49 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -11.09 7.61 -37.95 -0.29 -11.38 16 8 H 0.09 2.17 5.46 -52.49 -0.29 1.88 16 9 C 0.10 2.39 4.55 -106.48 -0.48 1.90 16 10 C 0.04 0.92 6.68 -38.72 -0.26 0.66 16 11 F -0.14 -3.67 14.25 2.25 0.03 -3.64 16 12 C -0.13 -2.86 9.99 -39.55 -0.40 -3.26 16 13 C -0.22 -4.33 10.02 -39.42 -0.40 -4.72 16 14 C -0.08 -1.61 9.72 -39.30 -0.38 -1.99 16 15 C -0.15 -3.30 4.58 -104.28 -0.48 -3.78 16 16 C -0.06 -1.07 4.72 -104.71 -0.49 -1.57 16 17 C -0.02 -0.38 9.27 -39.20 -0.36 -0.74 16 18 C -0.25 -4.22 5.37 -104.65 -0.56 -4.78 16 19 C 0.51 8.12 3.31 36.00 0.12 8.24 16 20 F -0.19 -2.74 15.95 2.25 0.04 -2.71 16 21 F -0.18 -2.91 17.23 2.25 0.04 -2.87 16 22 F -0.18 -3.07 17.23 2.25 0.04 -3.03 16 23 C -0.04 -0.61 9.42 -39.51 -0.37 -0.99 16 24 C -0.21 -3.17 9.88 -39.42 -0.39 -3.56 16 25 C 0.26 4.47 5.66 -83.49 -0.47 4.00 16 26 N -0.86 -13.10 7.72 32.59 0.25 -12.85 16 27 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 28 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 29 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 32 H 0.13 1.59 7.13 -52.48 -0.37 1.21 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.39 4.67 8.84 -40.82 -0.36 4.31 16 35 H 0.41 6.97 6.57 -40.82 -0.27 6.70 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -26.39 316.29 -7.08 -33.47 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -2.54 Total: 12.50 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -5.29 Total: -20.10 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.87 Total: -31.88 kcal Atomic # 9 Polarization: -12.39 SS G_CDS: 0.15 Total: -12.25 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.39 -7.08 -33.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243007371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.161 kcal (2) G-P(sol) polarization free energy of solvation -26.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds