Wall clock time and date at job start Tue Mar 31 2020 14:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47286 * 300.00662 * 3 2 1 6 6 H 1.48498 * 109.46875 * 60.00518 * 3 2 1 7 7 C 1.40042 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00146 * 159.63738 * 7 2 1 9 9 C 1.40757 * 119.99986 * 339.63603 * 7 2 1 10 10 C 1.41047 * 120.34930 * 323.71371 * 9 7 2 11 11 F 1.35102 * 120.09713 * 0.02787 * 10 9 7 12 12 C 1.37693 * 119.80171 * 180.27807 * 10 9 7 13 13 C 1.38862 * 120.54649 * 359.72696 * 12 10 9 14 14 C 1.38060 * 120.72653 * 0.04365 * 13 12 10 15 15 C 1.39174 * 120.16721 * 359.95514 * 14 13 12 16 16 C 1.47706 * 120.26959 * 180.02562 * 15 14 13 17 17 C 1.39638 * 120.20104 * 65.25174 * 16 15 14 18 18 C 1.37856 * 119.92665 * 180.27839 * 17 16 15 19 19 C 1.50699 * 119.83484 * 179.74369 * 18 17 16 20 20 F 1.39903 * 109.46840 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.47261 * 299.97399 * 19 18 17 22 22 F 1.39899 * 109.47417 * 59.97989 * 19 18 17 23 23 C 1.38548 * 120.32436 * 359.72051 * 18 17 16 24 24 C 1.38120 * 120.40365 * 0.02562 * 23 18 17 25 25 C 1.38790 * 120.06588 * 359.97438 * 24 23 18 26 26 N 1.39241 * 120.16115 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99668 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.72535 * 179.75018 * 12 10 9 29 29 H 1.07993 * 119.63572 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.91905 * 179.97438 * 14 13 12 31 31 H 1.08003 * 120.03201 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.80258 * 180.02562 * 23 18 17 33 33 H 1.07993 * 119.97084 * 179.97438 * 24 23 18 34 34 H 0.97001 * 120.00506 * 359.97438 * 26 25 24 35 35 H 0.97004 * 119.99723 * 179.72686 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0084 -1.2128 -0.0005 8 1 3.0377 -1.2420 -0.3260 9 6 1.3705 -2.3939 0.4231 10 6 0.4415 -2.3610 1.4839 11 9 0.1579 -1.1926 2.1002 12 6 -0.1715 -3.5241 1.8930 13 6 0.1127 -4.7300 1.2659 14 6 1.0147 -4.7869 0.2223 15 6 1.6517 -3.6296 -0.2155 16 6 2.6167 -3.6878 -1.3323 17 6 2.1869 -4.0353 -2.6146 18 6 3.0935 -4.0935 -3.6516 19 6 2.6284 -4.4743 -5.0335 20 9 3.7177 -4.4646 -5.9113 21 9 2.0677 -5.7556 -5.0002 22 9 1.6681 -3.5563 -5.4720 23 6 4.4298 -3.8031 -3.4296 24 6 4.8688 -3.4527 -2.1677 25 6 3.9703 -3.3890 -1.1118 26 7 4.4105 -3.0355 0.1610 27 1 -0.4849 0.8400 0.0004 28 1 -0.8797 -3.4981 2.7081 29 1 -0.3770 -5.6332 1.5984 30 1 1.2264 -5.7319 -0.2558 31 1 1.1463 -4.2630 -2.7928 32 1 5.1327 -3.8509 -4.2482 33 1 5.9121 -3.2282 -2.0024 34 1 5.3472 -2.8335 0.3116 35 1 3.7798 -2.9879 0.8965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243007371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:34 Heat of formation + Delta-G solvation = -167.642446 kcal Electronic energy + Delta-G solvation = -27523.856136 eV Core-core repulsion = 22984.913571 eV Total energy + Delta-G solvation = -4538.942565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.03150 -48.93933 -48.55335 -48.49936 -40.70815 -38.64826 -35.82126 -35.37140 -33.15169 -31.44614 -30.87627 -29.60136 -27.08645 -26.06639 -24.35262 -22.99850 -22.57562 -21.53530 -19.41011 -19.35834 -19.27971 -18.99771 -17.82625 -17.70009 -17.24220 -17.06837 -16.38258 -15.98620 -15.65408 -15.45428 -15.42697 -15.18530 -14.96127 -14.83421 -14.74421 -14.68383 -14.58494 -14.28552 -14.19666 -14.06365 -13.51745 -13.26362 -13.08287 -13.02415 -12.52275 -12.48693 -12.33781 -12.05383 -11.86395 -11.59059 -11.20928 -10.91295 -9.87090 -9.27744 -9.05929 -8.68951 -8.35806 -6.34573 0.35227 0.45392 0.87247 0.94138 1.35724 1.44226 1.47971 1.85323 2.18675 2.69799 2.78301 2.93887 3.16365 3.21877 3.46152 3.61305 3.98847 4.03888 4.20848 4.34376 4.39884 4.60954 4.64159 4.82252 4.89075 5.09523 5.16157 5.26539 5.32996 5.39050 5.50938 5.67822 5.73287 5.88003 6.02170 6.02647 6.29083 6.52307 6.63204 6.87472 6.94685 7.07607 8.32361 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.005089 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.635241 B = 5500.786897 C = 6233.047544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.963 3.037 4 H -0.248 1.248 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.079 3.921 10 C -0.001 4.001 11 F -0.160 7.160 12 C -0.140 4.140 13 C -0.204 4.204 14 C -0.089 4.089 15 C -0.142 4.142 16 C -0.090 4.090 17 C -0.032 4.032 18 C -0.261 4.261 19 C 0.519 3.481 20 F -0.177 7.177 21 F -0.185 7.185 22 F -0.191 7.191 23 C -0.032 4.032 24 C -0.204 4.204 25 C 0.255 3.745 26 N -0.849 5.849 27 H 0.284 0.716 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.409 0.591 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -6.138 -4.025 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.171 1.171 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.508 4.508 8 H 0.118 0.882 9 C 0.076 3.924 10 C -0.021 4.021 11 F -0.138 7.138 12 C -0.159 4.159 13 C -0.223 4.223 14 C -0.108 4.108 15 C -0.143 4.143 16 C -0.095 4.095 17 C -0.051 4.051 18 C -0.265 4.265 19 C 0.465 3.535 20 F -0.158 7.158 21 F -0.167 7.167 22 F -0.172 7.172 23 C -0.051 4.051 24 C -0.226 4.226 25 C 0.145 3.855 26 N -0.385 5.385 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.239 0.761 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.914 -5.954 -4.037 11.455 hybrid contribution -0.584 1.236 0.336 1.407 sum 8.330 -4.718 -3.701 10.264 Atomic orbital electron populations 1.69838 1.09251 1.30493 1.34176 1.26614 0.95124 1.04285 0.91908 0.85414 0.80289 0.77512 0.78243 1.17148 1.19875 1.19889 1.19675 1.00156 0.91417 1.39574 0.88232 1.17762 0.91285 0.93594 0.89764 1.18217 1.05649 0.80633 0.97628 1.91279 1.92857 1.48190 1.81520 1.20942 1.00853 0.92501 1.01635 1.20486 1.04238 0.96524 1.01022 1.21015 0.96294 0.96852 0.96602 1.18497 1.04110 0.92943 0.98799 1.18059 0.91711 1.06834 0.92896 1.20637 0.98297 0.95095 0.91050 1.19493 0.97013 1.18611 0.91351 1.18234 0.74587 0.74132 0.86562 1.93119 1.54515 1.96296 1.71900 1.93172 1.85948 1.40645 1.96893 1.93184 1.65642 1.67183 1.91204 1.20874 0.93089 0.93367 0.97767 1.20711 1.00227 1.10496 0.91192 1.18174 0.91690 0.88886 0.86732 1.42623 1.12869 1.75431 1.07605 0.90561 0.86663 0.85040 0.86106 0.86845 0.82720 0.82392 0.76083 0.76795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.29 11.12 21.85 0.24 -43.05 16 2 C 0.04 1.87 4.49 85.28 0.38 2.26 16 3 Si 0.96 38.53 29.61 68.60 2.03 40.56 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.48 -23.50 7.61 23.32 0.18 -23.32 16 8 H 0.10 4.58 5.46 -2.91 -0.02 4.56 16 9 C 0.08 3.84 4.55 -21.07 -0.10 3.74 16 10 C 0.00 -0.05 6.68 22.83 0.15 0.10 16 11 F -0.16 -8.52 14.25 44.97 0.64 -7.88 16 12 C -0.14 -6.08 9.99 22.29 0.22 -5.85 16 13 C -0.20 -7.84 10.02 22.38 0.22 -7.61 16 14 C -0.09 -3.49 9.72 22.45 0.22 -3.27 16 15 C -0.14 -6.05 4.58 -19.64 -0.09 -6.14 16 16 C -0.09 -3.45 4.72 -19.92 -0.09 -3.54 16 17 C -0.03 -1.15 9.27 22.52 0.21 -0.94 16 18 C -0.26 -8.24 5.37 -19.88 -0.11 -8.35 16 19 C 0.52 15.51 3.31 71.24 0.24 15.74 16 20 F -0.18 -4.71 15.95 44.97 0.72 -3.99 16 21 F -0.19 -5.56 17.23 44.97 0.77 -4.78 16 22 F -0.19 -6.26 17.23 44.97 0.77 -5.48 16 23 C -0.03 -0.86 9.42 22.32 0.21 -0.65 16 24 C -0.20 -5.38 9.88 22.37 0.22 -5.16 16 25 C 0.26 8.25 5.66 38.61 0.22 8.47 16 26 N -0.85 -24.58 7.72 -50.81 -0.39 -24.97 16 27 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 30 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.16 3.21 7.13 -2.91 -0.02 3.19 16 33 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.41 8.72 8.84 -92.71 -0.82 7.90 16 35 H 0.40 13.41 6.57 -92.71 -0.61 12.80 16 Total: -1.00 -57.92 316.29 6.65 -51.27 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.23 Total: 32.84 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 2.09 Total: -34.52 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -0.15 Total: -68.02 kcal Atomic # 9 Polarization: -25.04 SS G_CDS: 2.91 Total: -22.14 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -57.92 6.65 -51.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243007371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.368 kcal (2) G-P(sol) polarization free energy of solvation -57.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds