Wall clock time and date at job start Tue Mar 31 2020 14:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86799 * 119.99623 * 2 1 4 4 H 1.48502 * 109.46730 * 270.00115 * 3 2 1 5 5 H 1.48498 * 109.47436 * 29.99773 * 3 2 1 6 6 H 1.48493 * 109.47197 * 150.00229 * 3 2 1 7 7 C 1.38636 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.35668 * 116.99873 * 185.06185 * 9 7 2 11 11 C 1.38703 * 120.12321 * 354.39846 * 10 9 7 12 12 C 1.38331 * 120.02882 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.86108 * 179.97438 * 12 11 10 14 14 C 1.38692 * 120.27704 * 0.02562 * 12 11 10 15 15 C 1.37960 * 120.24471 * 359.73980 * 14 12 11 16 16 C 1.39328 * 119.96859 * 0.51167 * 15 14 12 17 17 C 1.48233 * 120.13758 * 179.76763 * 16 15 14 18 18 C 1.40419 * 119.78940 * 129.71944 * 17 16 15 19 19 C 1.35817 * 120.91306 * 179.97438 * 18 17 16 20 20 C 1.40670 * 120.08605 * 359.97438 * 19 18 17 21 21 N 1.33791 * 120.77828 * 180.29385 * 20 19 18 22 22 C 1.31536 * 121.32458 * 180.28035 * 21 20 19 23 23 O 1.35577 * 119.19368 * 179.71812 * 22 21 20 24 24 C 1.40032 * 121.60746 * 359.43805 * 22 21 20 25 25 C 1.36295 * 119.86715 * 0.27793 * 24 22 21 26 26 C 1.41036 * 118.26521 * 359.97438 * 25 24 22 27 27 C 1.38370 * 119.79103 * 309.68447 * 17 16 15 28 28 H 0.96997 * 120.00527 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.98607 * 359.95922 * 11 10 9 30 30 H 1.07997 * 119.87581 * 180.02562 * 14 12 11 31 31 H 1.07997 * 120.01290 * 180.25791 * 15 14 12 32 32 H 1.07999 * 119.54539 * 0.02562 * 18 17 16 33 33 H 1.07991 * 119.95626 * 180.02562 * 19 18 17 34 34 H 0.96707 * 113.99745 * 269.72452 * 23 22 21 35 35 H 1.08004 * 120.06490 * 180.29950 * 24 22 21 36 36 H 1.07997 * 120.86265 * 179.97438 * 25 24 22 37 37 H 1.08005 * 120.27904 * 0.04303 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0016 10 6 2.0698 -3.5035 0.1087 11 6 3.4553 -3.4398 0.0940 12 6 4.2027 -4.5986 0.2039 13 9 5.5521 -4.5327 0.1887 14 6 3.5727 -5.8279 0.3286 15 6 2.1953 -5.9039 0.3493 16 6 1.4325 -4.7438 0.2341 17 6 -0.0477 -4.8216 0.2508 18 6 -0.7805 -3.9885 1.1114 19 6 -2.1372 -4.0405 1.1449 20 6 -2.8295 -4.9367 0.3104 21 7 -4.1660 -4.9953 0.3279 22 6 -4.8239 -5.8330 -0.4438 23 8 -6.1782 -5.8602 -0.3869 24 6 -4.1599 -6.6933 -1.3269 25 6 -2.7988 -6.6774 -1.3953 26 6 -2.0986 -5.7807 -0.5617 27 6 -0.6986 -5.7143 -0.5824 28 1 -0.4851 0.8400 0.0004 29 1 3.9507 -2.4852 -0.0035 30 1 4.1626 -6.7285 0.4144 31 1 1.7087 -6.8627 0.4508 32 1 -0.2581 -3.2963 1.7550 33 1 -2.6854 -3.3924 1.8126 34 1 -6.5322 -6.4855 0.2603 35 1 -4.7253 -7.3679 -1.9528 36 1 -2.2702 -7.3342 -2.0703 37 1 -0.1327 -6.3541 -1.2434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244235282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:40 Heat of formation + Delta-G solvation = -53.553347 kcal Electronic energy + Delta-G solvation = -25877.608367 eV Core-core repulsion = 21885.469816 eV Total energy + Delta-G solvation = -3992.138550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86321 -41.88702 -40.89114 -39.18549 -38.09528 -36.71467 -34.51050 -34.34769 -32.51870 -31.19128 -30.88426 -29.09159 -27.39987 -25.16133 -24.70308 -23.72723 -22.89955 -22.61099 -20.15531 -19.97589 -19.24321 -18.88002 -18.10699 -17.30300 -17.04611 -16.87871 -16.59589 -16.37831 -15.99850 -15.86247 -15.51075 -15.25377 -15.02390 -14.93019 -14.76512 -14.52761 -14.12915 -14.02229 -13.67100 -13.42889 -13.03335 -12.84381 -12.61617 -12.47874 -12.41298 -12.22975 -12.16548 -12.02621 -11.55149 -11.48148 -10.84899 -10.43680 -9.93865 -9.54056 -9.33151 -8.74952 -8.51090 -6.19237 -0.62948 -0.25297 0.29794 0.54336 1.04899 1.33262 1.40645 1.49156 1.86281 2.12383 2.62683 2.67919 3.00943 3.10925 3.23988 3.45397 3.58639 3.67118 3.73297 3.92231 3.99818 4.15022 4.23549 4.26265 4.37735 4.47213 4.49471 4.77498 4.86785 4.90886 4.98482 5.08598 5.11537 5.15171 5.27694 5.32806 5.42374 5.45565 5.51039 5.68691 5.85482 5.95219 6.04533 6.64925 6.92285 6.94320 7.65883 8.68339 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.004210 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.268992 B = 6648.680670 C = 8913.031816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.009 2.991 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.419 4.419 8 H 0.099 0.901 9 O -0.196 6.196 10 C 0.157 3.843 11 C -0.286 4.286 12 C 0.137 3.863 13 F -0.147 7.147 14 C -0.218 4.218 15 C -0.018 4.018 16 C -0.145 4.145 17 C -0.028 4.028 18 C -0.063 4.063 19 C -0.118 4.118 20 C 0.130 3.870 21 N -0.537 5.537 22 C 0.329 3.671 23 O -0.492 6.492 24 C -0.185 4.185 25 C -0.029 4.029 26 C -0.121 4.121 27 C -0.078 4.078 28 H 0.273 0.727 29 H 0.126 0.874 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.422 0.578 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -17.154 -1.526 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.209 4.209 3 Si 0.829 3.171 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.116 0.884 9 O -0.100 6.100 10 C 0.104 3.896 11 C -0.306 4.306 12 C 0.118 3.882 13 F -0.125 7.125 14 C -0.237 4.237 15 C -0.035 4.035 16 C -0.146 4.146 17 C -0.028 4.028 18 C -0.083 4.083 19 C -0.136 4.136 20 C 0.010 3.990 21 N -0.258 5.258 22 C 0.135 3.865 23 O -0.303 6.303 24 C -0.205 4.205 25 C -0.054 4.054 26 C -0.123 4.123 27 C -0.096 4.096 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.182 0.818 31 H 0.191 0.809 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.283 0.717 35 H 0.197 0.803 36 H 0.205 0.795 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.637 -15.954 -1.381 16.422 hybrid contribution 0.890 1.062 0.182 1.397 sum -2.748 -14.892 -1.199 15.191 Atomic orbital electron populations 1.70180 1.07689 1.28798 1.47169 1.26403 0.96680 1.02270 0.95548 0.84707 0.77940 0.75204 0.79209 1.18951 1.19644 1.17893 1.21763 0.92411 0.81453 1.53844 0.88371 1.83999 1.34809 1.11982 1.79215 1.19514 0.89712 0.88033 0.92352 1.21020 0.94010 0.99083 1.16519 1.17680 0.76039 0.94595 0.99871 1.91437 1.29852 1.97390 1.93845 1.20990 0.95342 0.96038 1.11351 1.21056 0.92059 0.97020 0.93410 1.18211 0.92037 0.90975 1.13400 1.18646 0.91742 0.96140 0.96256 1.20843 0.93600 0.96283 0.97571 1.20598 0.93678 0.98932 1.00436 1.18568 0.87803 0.96324 0.96327 1.67362 1.09111 1.23201 1.26118 1.19758 0.84792 0.90329 0.91644 1.84702 1.14264 1.67642 1.63654 1.22103 0.95426 1.01232 1.01757 1.21851 0.93833 0.94752 0.94936 1.18976 0.94967 0.99339 0.99032 1.21517 0.92043 0.98418 0.97670 0.91833 0.85624 0.81821 0.80927 0.87814 0.85998 0.71670 0.80250 0.79488 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.51 13.67 21.61 0.30 -53.21 16 2 C -0.01 -0.49 5.49 84.83 0.47 -0.03 16 3 Si 1.01 42.21 29.55 68.60 2.03 44.24 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.42 -23.32 9.49 67.91 0.64 -22.67 16 8 H 0.10 5.11 5.21 -2.91 -0.02 5.10 16 9 O -0.20 -10.86 8.07 -21.67 -0.17 -11.04 16 10 C 0.16 7.22 6.54 22.81 0.15 7.37 16 11 C -0.29 -12.19 9.13 22.40 0.20 -11.98 16 12 C 0.14 4.86 7.30 22.40 0.16 5.02 16 13 F -0.15 -4.99 17.26 44.97 0.78 -4.22 16 14 C -0.22 -6.12 10.01 22.31 0.22 -5.90 16 15 C -0.02 -0.49 9.48 22.47 0.21 -0.28 16 16 C -0.14 -5.42 5.47 -19.93 -0.11 -5.53 16 17 C -0.03 -1.03 5.27 -20.06 -0.11 -1.13 16 18 C -0.06 -2.64 8.67 22.24 0.19 -2.45 16 19 C -0.12 -4.73 9.95 22.30 0.22 -4.51 16 20 C 0.13 4.71 6.61 40.29 0.27 4.98 16 21 N -0.54 -18.78 10.36 -302.00 -3.13 -21.90 16 22 C 0.33 8.74 7.72 85.17 0.66 9.40 16 23 O -0.49 -10.62 13.55 -88.85 -1.20 -11.82 16 24 C -0.18 -3.57 9.95 22.25 0.22 -3.35 16 25 C -0.03 -0.57 9.88 22.50 0.22 -0.35 16 26 C -0.12 -3.56 5.74 -21.28 -0.12 -3.69 16 27 C -0.08 -2.28 9.24 22.77 0.21 -2.07 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.13 5.61 5.64 -2.91 -0.02 5.60 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.17 3.26 8.03 -2.91 -0.02 3.24 16 32 H 0.10 4.87 7.64 -2.91 -0.02 4.85 16 33 H 0.12 4.89 8.06 -2.92 -0.02 4.87 16 34 H 0.42 4.27 9.06 -74.05 -0.67 3.60 16 35 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.17 3.49 8.03 -2.91 -0.02 3.47 16 Total: -1.00 -75.25 333.87 2.80 -72.46 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.48 Total: 22.69 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.72 Total: -37.19 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.83 Total: -75.11 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.38 Total: -22.86 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -75.25 2.80 -72.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244235282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.904 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds