Wall clock time and date at job start Tue Mar 31 2020 14:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86802 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00157 * 3 2 1 5 5 H 1.48502 * 109.46861 * 29.99851 * 3 2 1 6 6 H 1.48496 * 109.47428 * 149.99972 * 3 2 1 7 7 C 1.39928 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00662 * 197.79721 * 7 2 1 9 9 C 1.41317 * 119.99846 * 17.79038 * 7 2 1 10 10 C 1.40786 * 120.20375 * 24.65621 * 9 7 2 11 11 C 1.37620 * 120.01745 * 179.97438 * 10 9 7 12 12 C 1.38512 * 120.45380 * 0.02562 * 11 10 9 13 13 C 1.39551 * 120.42118 * 359.75659 * 12 11 10 14 14 C 1.48382 * 120.01471 * 180.26823 * 13 12 11 15 15 C 1.39764 * 120.53818 * 309.94965 * 14 13 12 16 16 C 1.38413 * 118.31656 * 179.73952 * 15 14 13 17 17 C 1.38314 * 119.28002 * 0.53923 * 16 15 14 18 18 C 1.50703 * 119.48612 * 179.69845 * 17 16 15 19 19 C 1.52997 * 109.47057 * 125.02318 * 18 17 16 20 20 F 1.39900 * 109.46885 * 59.99856 * 19 18 17 21 21 F 1.39895 * 109.47027 * 180.02562 * 19 18 17 22 22 F 1.39904 * 109.46933 * 300.00471 * 19 18 17 23 23 N 1.31886 * 121.02688 * 359.72625 * 17 16 15 24 24 C 1.31740 * 121.85609 * 359.97438 * 23 17 16 25 25 C 1.39100 * 119.96486 * 0.49303 * 13 12 11 26 26 F 1.35103 * 120.22287 * 179.76639 * 25 13 12 27 27 H 0.97001 * 120.00762 * 359.97438 * 1 2 3 28 28 H 1.07990 * 119.99190 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.77339 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.78503 * 180.02562 * 12 11 10 31 31 H 1.08006 * 120.83865 * 0.02562 * 15 14 13 32 32 H 1.08000 * 120.35974 * 180.23800 * 16 15 14 33 33 H 1.09002 * 109.47194 * 245.02690 * 18 17 16 34 34 H 1.09001 * 109.46679 * 5.02250 * 18 17 16 35 35 H 1.08000 * 119.70322 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4402 0.7000 7 6 2.0081 -1.2117 -0.0005 8 1 3.0494 -1.2343 0.2853 9 6 1.3523 -2.4062 -0.3750 10 6 0.2231 -2.3609 -1.2146 11 6 -0.4123 -3.5266 -1.5773 12 6 0.0508 -4.7498 -1.1213 13 6 1.1711 -4.8166 -0.2920 14 6 1.6630 -6.1323 0.1865 15 6 0.7846 -7.0492 0.7706 16 6 1.2917 -8.2649 1.1957 17 6 2.6410 -8.5265 1.0407 18 6 3.1993 -9.8459 1.5081 19 6 3.9297 -10.5295 0.3505 20 9 4.9750 -9.7105 -0.0898 21 9 4.4475 -11.7545 0.7843 22 9 3.0341 -10.7485 -0.7016 23 7 3.4467 -7.6390 0.4906 24 6 3.0087 -6.4714 0.0657 25 6 1.8236 -3.6490 0.0898 26 9 2.9059 -3.7073 0.8963 27 1 -0.4851 0.8400 0.0004 28 1 -0.1445 -1.4113 -1.5742 29 1 -1.2779 -3.4873 -2.2219 30 1 -0.4559 -5.6578 -1.4130 31 1 -0.2641 -6.8168 0.8831 32 1 0.6418 -8.9993 1.6481 33 1 3.8971 -9.6752 2.3279 34 1 2.3848 -10.4839 1.8512 35 1 3.6992 -5.7707 -0.3799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244292608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:01 Heat of formation + Delta-G solvation = -170.753676 kcal Electronic energy + Delta-G solvation = -26282.973053 eV Core-core repulsion = 21743.895575 eV Total energy + Delta-G solvation = -4539.077478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.99630 -49.25788 -48.54248 -48.44221 -41.29074 -39.14342 -36.05755 -34.72543 -33.49956 -31.89855 -31.43760 -28.95130 -27.32707 -25.36884 -24.66131 -23.40847 -22.51619 -22.05994 -19.49153 -19.42038 -19.30436 -18.52402 -17.99215 -17.64062 -17.17997 -16.96722 -16.45935 -16.17994 -15.93037 -15.45859 -15.37908 -15.27290 -15.03378 -14.92000 -14.69179 -14.64465 -14.59990 -14.37868 -14.02348 -13.80301 -13.59935 -13.47073 -13.15373 -13.11243 -12.90234 -12.78071 -12.52638 -12.19574 -11.80179 -11.51405 -11.14439 -10.86356 -10.54857 -10.15239 -9.43386 -9.06688 -8.73408 -6.46061 -0.20747 0.26537 0.78545 0.89997 1.36087 1.47036 1.48860 1.87039 2.16987 2.55801 2.69623 2.80749 3.02653 3.18257 3.38284 3.45595 3.73999 3.78255 3.92870 4.02316 4.13285 4.30169 4.40335 4.49397 4.59168 4.67970 4.76365 4.92521 5.02237 5.10125 5.19559 5.29276 5.54106 5.65321 5.69234 5.96870 5.97680 6.12341 6.51295 6.73526 6.82235 6.88368 8.21910 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.002810 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.618066 B = 9960.888726 C =10518.960754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.068 0.932 9 C 0.058 3.942 10 C -0.160 4.160 11 C -0.106 4.106 12 C -0.189 4.189 13 C -0.061 4.061 14 C -0.083 4.083 15 C -0.067 4.067 16 C -0.136 4.136 17 C 0.086 3.914 18 C -0.101 4.101 19 C 0.454 3.546 20 F -0.186 7.186 21 F -0.184 7.184 22 F -0.194 7.194 23 N -0.487 5.487 24 C 0.101 3.899 25 C -0.043 4.043 26 F -0.167 7.167 27 H 0.294 0.706 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.186 0.814 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -16.277 2.600 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.524 4.524 8 H 0.086 0.914 9 C 0.055 3.945 10 C -0.180 4.180 11 C -0.125 4.125 12 C -0.208 4.208 13 C -0.063 4.063 14 C -0.085 4.085 15 C -0.093 4.093 16 C -0.155 4.155 17 C -0.052 4.052 18 C -0.139 4.139 19 C 0.400 3.600 20 F -0.168 7.168 21 F -0.166 7.166 22 F -0.175 7.175 23 N -0.196 5.196 24 C -0.056 4.056 25 C -0.063 4.063 26 F -0.146 7.146 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.204 0.796 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.298 -16.349 2.536 16.547 hybrid contribution 0.050 1.365 -0.097 1.369 sum 0.347 -14.984 2.439 15.185 Atomic orbital electron populations 1.69809 1.08695 1.31122 1.34210 1.26662 0.95580 1.04227 0.91002 0.85197 0.78918 0.75789 0.79845 1.18149 1.18586 1.18959 1.19669 0.98226 0.92585 1.41929 0.91368 1.17902 0.93698 0.91307 0.91632 1.21281 0.98354 0.98242 1.00102 1.21023 0.99539 0.92092 0.99808 1.20646 0.98164 0.97828 1.04187 1.18424 0.97570 0.89407 1.00880 1.19932 0.95045 0.94300 0.99213 1.21965 1.00885 0.92391 0.94039 1.22237 0.95298 0.97899 1.00064 1.21111 0.91441 0.95152 0.97496 1.21891 1.04366 0.92329 0.95282 1.20644 0.77908 0.76747 0.84683 1.93229 1.60036 1.72580 1.90935 1.93183 1.87892 1.46064 1.89415 1.93171 1.68084 1.94985 1.61293 1.67403 1.39584 1.02364 1.10243 1.22632 0.93356 0.92936 0.96660 1.18138 0.91465 0.94696 1.01969 1.91244 1.53796 1.97250 1.72291 0.89510 0.86666 0.85136 0.84745 0.82457 0.79636 0.84042 0.81570 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.60 10.96 21.82 0.24 -40.36 16 2 C 0.04 2.07 5.14 85.25 0.44 2.50 16 3 Si 0.98 37.73 29.60 68.60 2.03 39.76 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.50 -27.03 8.78 23.44 0.21 -26.83 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.06 3.08 5.57 -21.27 -0.12 2.97 16 10 C -0.16 -7.91 8.69 22.75 0.20 -7.71 16 11 C -0.11 -4.41 10.01 22.19 0.22 -4.19 16 12 C -0.19 -7.37 9.54 22.65 0.22 -7.15 16 13 C -0.06 -2.61 5.50 -20.05 -0.11 -2.72 16 14 C -0.08 -2.99 5.32 -19.95 -0.11 -3.10 16 15 C -0.07 -1.83 9.67 22.68 0.22 -1.61 16 16 C -0.14 -2.81 9.70 22.33 0.22 -2.60 16 17 C 0.09 2.07 5.92 42.57 0.25 2.32 16 18 C -0.10 -1.53 5.69 29.85 0.17 -1.36 16 19 C 0.45 9.48 3.15 71.98 0.23 9.70 16 20 F -0.19 -5.13 15.95 44.97 0.72 -4.41 16 21 F -0.18 -3.51 17.32 44.97 0.78 -2.73 16 22 F -0.19 -4.56 17.02 44.97 0.77 -3.79 16 23 N -0.49 -15.82 8.88 -183.01 -1.63 -17.45 16 24 C 0.10 3.73 10.04 84.96 0.85 4.58 16 25 C -0.04 -2.15 7.17 23.11 0.17 -1.98 16 26 F -0.17 -8.58 15.35 44.97 0.69 -7.89 16 27 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 28 H 0.12 5.86 6.16 -2.92 -0.02 5.84 16 29 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.13 4.27 8.04 -2.91 -0.02 4.24 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.19 1.94 7.94 -2.91 -0.02 1.92 16 33 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.17 1.03 7.86 -2.39 -0.02 1.01 16 35 H 0.14 5.44 7.79 -2.91 -0.02 5.42 16 Total: -1.00 -64.55 324.35 7.80 -56.75 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.16 Total: 17.29 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.05 Total: -37.17 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -1.39 Total: -57.81 kcal Atomic # 9 Polarization: -21.77 SS G_CDS: 2.95 Total: -18.82 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -64.55 7.80 -56.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244292608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.003 kcal (2) G-P(sol) polarization free energy of solvation -64.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds