Wall clock time and date at job start Tue Mar 31 2020 14:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86804 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47042 * 275.27312 * 3 2 1 5 5 H 1.48505 * 109.46950 * 35.27546 * 3 2 1 6 6 H 1.48499 * 109.46788 * 155.27110 * 3 2 1 7 7 C 1.40025 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 340.72007 * 7 2 1 9 9 C 1.40763 * 120.00022 * 160.72252 * 7 2 1 10 10 C 1.41036 * 120.35197 * 316.36937 * 9 7 2 11 11 F 1.35100 * 120.09739 * 359.96939 * 10 9 7 12 12 C 1.37687 * 119.80421 * 180.27615 * 10 9 7 13 13 C 1.38859 * 120.54239 * 359.71779 * 12 10 9 14 14 C 1.38064 * 120.72472 * 0.02705 * 13 12 10 15 15 C 1.39165 * 120.16887 * 359.97438 * 14 13 12 16 16 C 1.47748 * 120.26893 * 180.02562 * 15 14 13 17 17 C 1.39783 * 120.07198 * 129.95602 * 16 15 14 18 18 C 1.37676 * 119.93002 * 179.97438 * 17 16 15 19 19 C 1.39190 * 120.07054 * 0.04095 * 18 17 16 20 20 N 1.39349 * 119.92889 * 179.97438 * 19 18 17 21 21 C 1.39143 * 120.14322 * 359.97438 * 19 18 17 22 22 C 1.50700 * 119.96412 * 179.97438 * 21 19 18 23 23 F 1.39908 * 109.47146 * 180.02562 * 22 21 19 24 24 F 1.39898 * 109.47421 * 300.02202 * 22 21 19 25 25 F 1.39897 * 109.47006 * 60.02633 * 22 21 19 26 26 C 1.37723 * 120.07246 * 0.02562 * 21 19 18 27 27 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.73395 * 179.74555 * 12 10 9 29 29 H 1.07998 * 119.64158 * 179.97438 * 13 12 10 30 30 H 1.07999 * 119.91603 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.03761 * 0.04413 * 17 16 15 32 32 H 1.08001 * 119.96525 * 180.02562 * 18 17 16 33 33 H 0.96994 * 120.00014 * 179.97438 * 20 19 18 34 34 H 0.96996 * 119.99943 * 359.97438 * 20 19 18 35 35 H 1.08002 * 120.03460 * 179.72082 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3781 2.1108 -1.3941 5 1 1.4997 2.6180 0.8086 6 1 3.5909 1.4106 0.5857 7 6 2.0083 -1.2126 -0.0005 8 1 1.5137 -2.1219 0.3079 9 6 3.3567 -1.2466 -0.4030 10 6 3.7779 -0.5335 -1.5446 11 9 2.8870 0.1874 -2.2600 12 6 5.0985 -0.5792 -1.9314 13 6 6.0219 -1.3176 -1.2032 14 6 5.6348 -2.0198 -0.0792 15 6 4.3076 -1.9944 0.3386 16 6 3.8911 -2.7445 1.5415 17 6 3.1432 -2.1109 2.5380 18 6 2.7561 -2.8128 3.6573 19 6 3.1095 -4.1518 3.7977 20 7 2.7166 -4.8592 4.9322 21 6 3.8542 -4.7854 2.8078 22 6 4.2350 -6.2351 2.9642 23 9 4.9761 -6.6453 1.8506 24 9 5.0058 -6.3926 4.1210 25 9 3.0768 -7.0131 3.0660 26 6 4.2445 -4.0889 1.6856 27 1 -0.4851 0.8400 -0.0004 28 1 5.4191 -0.0360 -2.8081 29 1 7.0541 -1.3437 -1.5199 30 1 6.3639 -2.5901 0.4772 31 1 2.8683 -1.0721 2.4295 32 1 2.1779 -2.3239 4.4274 33 1 2.9620 -5.7924 5.0309 34 1 2.1978 -4.4185 5.6231 35 1 4.8264 -4.5800 0.9197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244376313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:29 Heat of formation + Delta-G solvation = -153.696073 kcal Electronic energy + Delta-G solvation = -27391.036862 eV Core-core repulsion = 22852.699057 eV Total energy + Delta-G solvation = -4538.337805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.02996 -47.70759 -47.52518 -47.48384 -39.33255 -37.51587 -34.43786 -33.68559 -31.62024 -30.78609 -30.05260 -27.50453 -25.52513 -25.25209 -22.62538 -21.85776 -20.98144 -20.26143 -18.36959 -18.34250 -18.00795 -17.69958 -16.70991 -16.41601 -15.90009 -15.64988 -14.96304 -14.52391 -14.43137 -14.42081 -14.06558 -13.98949 -13.93355 -13.78155 -13.64312 -13.55865 -13.37040 -13.08690 -12.91512 -12.40958 -12.29105 -11.87816 -11.72612 -11.34468 -11.10299 -10.90646 -10.76380 -10.29462 -10.26646 -10.18690 -9.65878 -9.20275 -8.77461 -8.03114 -7.59101 -7.06639 -6.97141 -4.56930 1.51252 1.67800 2.37617 2.43399 2.88841 3.14147 3.18022 3.23968 3.81707 3.97157 3.99985 4.05999 4.22680 4.38583 4.66388 5.02712 5.15928 5.42258 5.62645 5.69659 5.79263 5.81226 5.92153 6.10994 6.22735 6.31851 6.40922 6.57488 6.68767 7.01859 7.06567 7.10575 7.16210 7.34399 7.40964 7.55818 7.61486 7.71061 7.89803 8.24445 8.46523 8.65760 10.03073 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.004580 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.531675 B = 6112.453160 C = 7091.381128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.093 3.907 3 Si 0.897 3.103 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.454 4.454 8 H 0.100 0.900 9 C 0.081 3.919 10 C -0.016 4.016 11 F -0.146 7.146 12 C -0.116 4.116 13 C -0.208 4.208 14 C -0.079 4.079 15 C -0.128 4.128 16 C -0.047 4.047 17 C -0.003 4.003 18 C -0.202 4.202 19 C 0.251 3.749 20 N -0.875 5.875 21 C -0.272 4.272 22 C 0.514 3.486 23 F -0.178 7.178 24 F -0.186 7.186 25 F -0.184 7.184 26 C -0.036 4.036 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.394 0.606 34 H 0.401 0.599 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -6.177 7.869 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.127 4.127 3 Si 0.722 3.278 4 H -0.183 1.183 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.482 4.482 8 H 0.118 0.882 9 C 0.077 3.923 10 C -0.036 4.036 11 F -0.125 7.125 12 C -0.135 4.135 13 C -0.227 4.227 14 C -0.097 4.097 15 C -0.130 4.130 16 C -0.048 4.048 17 C -0.022 4.022 18 C -0.225 4.225 19 C 0.145 3.855 20 N -0.414 5.414 21 C -0.278 4.278 22 C 0.460 3.540 23 F -0.159 7.159 24 F -0.167 7.167 25 F -0.165 7.165 26 C -0.055 4.055 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.223 0.777 34 H 0.230 0.770 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.867 -6.083 7.834 11.524 hybrid contribution -0.061 0.387 0.079 0.399 sum 5.806 -5.697 7.913 11.348 Atomic orbital electron populations 1.69684 1.08096 1.30266 1.34142 1.26048 0.94644 1.01296 0.90700 0.86640 0.81117 0.80556 0.79440 1.18269 1.21761 1.17332 1.19123 0.92870 0.96542 1.39696 0.88237 1.17651 0.93807 0.91025 0.89778 1.17950 0.87033 1.04134 0.94439 1.91232 1.68226 1.75805 1.77228 1.20708 0.92086 1.00652 1.00096 1.20188 0.98043 1.05145 0.99368 1.20803 0.94676 0.98219 0.96032 1.18461 0.92128 1.06695 0.95678 1.18356 0.99954 0.91891 0.94648 1.21377 0.90404 1.00402 0.89972 1.20489 1.08318 0.92233 1.01421 1.17339 0.90998 0.91438 0.85704 1.42499 1.62988 1.14307 1.21652 1.19111 1.15298 0.91875 1.01516 1.18312 0.74247 0.88135 0.73335 1.93145 1.77683 1.91880 1.53240 1.93168 1.76352 1.96581 1.50605 1.93179 1.49713 1.77893 1.95750 1.20840 0.96582 0.93512 0.94526 0.90415 0.87492 0.87637 0.87780 0.84530 0.85639 0.77743 0.77039 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.73 13.93 55.55 0.77 -19.96 16 2 C 0.09 2.36 4.98 -17.32 -0.09 2.28 16 3 Si 0.90 20.53 24.72 -169.99 -4.20 16.33 16 4 H -0.26 -6.02 6.29 56.52 0.36 -5.66 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.45 -11.54 6.91 -37.96 -0.26 -11.80 16 8 H 0.10 2.70 7.79 -52.48 -0.41 2.29 16 9 C 0.08 1.93 4.68 -106.48 -0.50 1.43 16 10 C -0.02 -0.37 5.65 -38.72 -0.22 -0.59 16 11 F -0.15 -3.62 12.91 2.25 0.03 -3.59 16 12 C -0.12 -2.39 9.99 -39.55 -0.40 -2.78 16 13 C -0.21 -3.91 10.02 -39.42 -0.40 -4.30 16 14 C -0.08 -1.50 9.49 -39.30 -0.37 -1.88 16 15 C -0.13 -2.71 5.52 -104.27 -0.58 -3.29 16 16 C -0.05 -0.90 5.03 -104.87 -0.53 -1.42 16 17 C 0.00 -0.05 8.38 -39.21 -0.33 -0.38 16 18 C -0.20 -3.16 9.87 -39.43 -0.39 -3.55 16 19 C 0.25 3.74 6.66 -83.75 -0.56 3.18 16 20 N -0.88 -10.03 8.81 32.45 0.29 -9.74 16 21 C -0.27 -4.32 5.38 -104.47 -0.56 -4.88 16 22 C 0.51 7.44 2.80 36.01 0.10 7.54 16 23 F -0.18 -2.64 15.96 2.25 0.04 -2.61 16 24 F -0.19 -2.51 16.24 2.25 0.04 -2.48 16 25 F -0.18 -2.63 16.23 2.25 0.04 -2.59 16 26 C -0.04 -0.62 8.89 -39.21 -0.35 -0.97 16 27 H 0.29 6.78 8.30 -40.82 -0.34 6.45 16 28 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.10 1.71 8.04 -52.49 -0.42 1.29 16 31 H 0.14 2.64 7.32 -52.49 -0.38 2.25 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.39 4.28 6.22 -40.82 -0.25 4.03 16 34 H 0.40 3.58 8.83 -40.82 -0.36 3.22 16 35 H 0.13 2.14 7.12 -52.49 -0.37 1.77 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -26.62 311.33 -6.38 -33.00 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.65 Total: 8.35 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -5.42 Total: -21.40 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 1.06 Total: -29.70 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 0.14 Total: -11.27 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.20 Total: 16.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.62 -6.38 -33.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244376313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.699 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds