Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86804 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47042 * 275.27312 * 3 2 1 5 5 H 1.48505 * 109.46950 * 35.27546 * 3 2 1 6 6 H 1.48499 * 109.46788 * 155.27110 * 3 2 1 7 7 C 1.40025 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 340.72007 * 7 2 1 9 9 C 1.40763 * 120.00022 * 160.72252 * 7 2 1 10 10 C 1.41036 * 120.35197 * 316.36937 * 9 7 2 11 11 F 1.35100 * 120.09739 * 359.96939 * 10 9 7 12 12 C 1.37687 * 119.80421 * 180.27615 * 10 9 7 13 13 C 1.38859 * 120.54239 * 359.71779 * 12 10 9 14 14 C 1.38064 * 120.72472 * 0.02705 * 13 12 10 15 15 C 1.39165 * 120.16887 * 359.97438 * 14 13 12 16 16 C 1.47748 * 120.26893 * 180.02562 * 15 14 13 17 17 C 1.39783 * 120.07198 * 129.95602 * 16 15 14 18 18 C 1.37676 * 119.93002 * 179.97438 * 17 16 15 19 19 C 1.39190 * 120.07054 * 0.04095 * 18 17 16 20 20 N 1.39349 * 119.92889 * 179.97438 * 19 18 17 21 21 C 1.39143 * 120.14322 * 359.97438 * 19 18 17 22 22 C 1.50700 * 119.96412 * 179.97438 * 21 19 18 23 23 F 1.39908 * 109.47146 * 180.02562 * 22 21 19 24 24 F 1.39898 * 109.47421 * 300.02202 * 22 21 19 25 25 F 1.39897 * 109.47006 * 60.02633 * 22 21 19 26 26 C 1.37723 * 120.07246 * 0.02562 * 21 19 18 27 27 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.73395 * 179.74555 * 12 10 9 29 29 H 1.07998 * 119.64158 * 179.97438 * 13 12 10 30 30 H 1.07999 * 119.91603 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.03761 * 0.04413 * 17 16 15 32 32 H 1.08001 * 119.96525 * 180.02562 * 18 17 16 33 33 H 0.96994 * 120.00014 * 179.97438 * 20 19 18 34 34 H 0.96996 * 119.99943 * 359.97438 * 20 19 18 35 35 H 1.08002 * 120.03460 * 179.72082 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3781 2.1108 -1.3941 5 1 1.4997 2.6180 0.8086 6 1 3.5909 1.4106 0.5857 7 6 2.0083 -1.2126 -0.0005 8 1 1.5137 -2.1219 0.3079 9 6 3.3567 -1.2466 -0.4030 10 6 3.7779 -0.5335 -1.5446 11 9 2.8870 0.1874 -2.2600 12 6 5.0985 -0.5792 -1.9314 13 6 6.0219 -1.3176 -1.2032 14 6 5.6348 -2.0198 -0.0792 15 6 4.3076 -1.9944 0.3386 16 6 3.8911 -2.7445 1.5415 17 6 3.1432 -2.1109 2.5380 18 6 2.7561 -2.8128 3.6573 19 6 3.1095 -4.1518 3.7977 20 7 2.7166 -4.8592 4.9322 21 6 3.8542 -4.7854 2.8078 22 6 4.2350 -6.2351 2.9642 23 9 4.9761 -6.6453 1.8506 24 9 5.0058 -6.3926 4.1210 25 9 3.0768 -7.0131 3.0660 26 6 4.2445 -4.0889 1.6856 27 1 -0.4851 0.8400 -0.0004 28 1 5.4191 -0.0360 -2.8081 29 1 7.0541 -1.3437 -1.5199 30 1 6.3639 -2.5901 0.4772 31 1 2.8683 -1.0721 2.4295 32 1 2.1779 -2.3239 4.4274 33 1 2.9620 -5.7924 5.0309 34 1 2.1978 -4.4185 5.6231 35 1 4.8264 -4.5800 0.9197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244376313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = -167.552219 kcal Electronic energy + Delta-G solvation = -27391.637710 eV Core-core repulsion = 22852.699057 eV Total energy + Delta-G solvation = -4538.938653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.17754 -49.54826 -48.67917 -48.61495 -40.68730 -39.06743 -35.72576 -35.44541 -32.97733 -32.29778 -31.64685 -28.92408 -26.98909 -26.74105 -24.00883 -23.23779 -22.62924 -21.71310 -19.72078 -19.52323 -19.48225 -19.11725 -17.92958 -17.63594 -17.42960 -17.40122 -16.64815 -16.20620 -15.78019 -15.69494 -15.56354 -15.39428 -15.07253 -15.05682 -14.88430 -14.78019 -14.74311 -14.63962 -14.31549 -13.93880 -13.67406 -13.55514 -13.32554 -12.95408 -12.77337 -12.49038 -12.18889 -11.98559 -11.88551 -11.56636 -11.31710 -11.05560 -10.09593 -9.57222 -9.30319 -8.82325 -8.37540 -6.43944 0.16535 0.26986 0.67189 0.91578 1.30367 1.33826 1.40363 1.70637 2.13754 2.58209 2.69848 2.72112 2.89449 3.04969 3.29497 3.49552 3.84391 3.91172 4.09846 4.31349 4.38923 4.47727 4.57487 4.66089 4.76373 4.89603 5.01356 5.08476 5.23212 5.35844 5.54833 5.62178 5.64644 5.76117 5.91545 6.00026 6.18789 6.34462 6.37894 6.70266 6.80100 6.81987 8.24339 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.004580 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.531675 B = 6112.453160 C = 7091.381128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.065 3.935 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.474 4.474 8 H 0.065 0.935 9 C 0.055 3.945 10 C -0.044 4.044 11 F -0.161 7.161 12 C -0.125 4.125 13 C -0.180 4.180 14 C -0.085 4.085 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.017 4.017 18 C -0.202 4.202 19 C 0.262 3.738 20 N -0.857 5.857 21 C -0.282 4.282 22 C 0.522 3.478 23 F -0.179 7.179 24 F -0.177 7.177 25 F -0.182 7.182 26 C -0.031 4.031 27 H 0.289 0.711 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.401 0.599 34 H 0.416 0.584 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -7.331 8.969 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.150 4.150 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.052 3.948 10 C -0.064 4.064 11 F -0.140 7.140 12 C -0.144 4.144 13 C -0.198 4.198 14 C -0.103 4.103 15 C -0.120 4.120 16 C -0.082 4.082 17 C -0.036 4.036 18 C -0.224 4.224 19 C 0.154 3.846 20 N -0.397 5.397 21 C -0.289 4.289 22 C 0.468 3.532 23 F -0.160 7.160 24 F -0.158 7.158 25 F -0.163 7.163 26 C -0.050 4.050 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.230 0.770 34 H 0.247 0.753 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.636 -7.254 8.974 14.412 hybrid contribution -0.659 0.528 -0.194 0.866 sum 7.977 -6.726 8.779 13.636 Atomic orbital electron populations 1.69721 1.08928 1.30791 1.37935 1.26474 0.94983 1.03011 0.90556 0.86023 0.80277 0.78728 0.78827 1.19241 1.20402 1.17571 1.18863 0.94009 0.95471 1.42087 0.91710 1.17862 0.93830 0.92608 0.90465 1.18383 0.88254 1.04861 0.94853 1.91186 1.69024 1.76262 1.77545 1.21087 0.90966 1.01079 1.01220 1.20790 0.99641 1.01790 0.97611 1.21249 0.94300 0.98317 0.96462 1.18857 0.92755 1.04766 0.95622 1.18360 1.02192 0.92963 0.94655 1.21307 0.91090 0.99944 0.91224 1.20665 1.08052 0.92607 1.01117 1.17389 0.89815 0.91212 0.86233 1.42484 1.61984 1.14486 1.20730 1.19252 1.15498 0.92736 1.01400 1.18041 0.74334 0.87300 0.73567 1.93145 1.77690 1.91804 1.53400 1.93188 1.76104 1.96485 1.50062 1.93188 1.49677 1.77710 1.95754 1.20859 0.96253 0.92715 0.95123 0.90100 0.84882 0.83250 0.84392 0.86547 0.83261 0.76955 0.75273 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.66 13.93 21.84 0.30 -46.36 16 2 C 0.06 3.44 4.98 85.28 0.42 3.87 16 3 Si 0.94 43.67 24.72 68.60 1.70 45.36 16 4 H -0.27 -12.67 6.29 99.48 0.63 -12.04 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.47 -25.50 6.91 23.32 0.16 -25.34 16 8 H 0.06 3.80 7.79 -2.91 -0.02 3.78 16 9 C 0.06 2.70 4.68 -21.07 -0.10 2.60 16 10 C -0.04 -2.06 5.65 22.83 0.13 -1.93 16 11 F -0.16 -8.17 12.91 44.97 0.58 -7.59 16 12 C -0.12 -4.82 9.99 22.29 0.22 -4.59 16 13 C -0.18 -5.98 10.02 22.38 0.22 -5.76 16 14 C -0.09 -2.98 9.49 22.45 0.21 -2.77 16 15 C -0.12 -4.96 5.52 -19.63 -0.11 -5.07 16 16 C -0.08 -3.05 5.03 -20.03 -0.10 -3.15 16 17 C -0.02 -0.62 8.38 22.51 0.19 -0.43 16 18 C -0.20 -6.11 9.87 22.37 0.22 -5.89 16 19 C 0.26 7.25 6.66 38.39 0.26 7.51 16 20 N -0.86 -17.08 8.81 -51.26 -0.45 -17.54 16 21 C -0.28 -8.41 5.38 -19.77 -0.11 -8.51 16 22 C 0.52 13.78 2.80 71.24 0.20 13.98 16 23 F -0.18 -4.87 15.96 44.97 0.72 -4.15 16 24 F -0.18 -4.25 16.24 44.97 0.73 -3.52 16 25 F -0.18 -4.75 16.23 44.97 0.73 -4.02 16 26 C -0.03 -1.03 8.89 22.51 0.20 -0.83 16 27 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 28 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.14 3.91 8.04 -2.91 -0.02 3.89 16 31 H 0.12 4.75 7.32 -2.91 -0.02 4.72 16 32 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.40 7.40 6.22 -92.71 -0.58 6.83 16 34 H 0.42 6.08 8.83 -92.71 -0.82 5.27 16 35 H 0.14 4.27 7.12 -2.91 -0.02 4.25 16 Total: -1.00 -60.20 311.33 6.05 -54.15 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.28 Total: 19.97 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.02 Total: -36.31 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.15 Total: -63.89 kcal Atomic # 9 Polarization: -22.05 SS G_CDS: 2.76 Total: -19.29 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.70 Total: 45.36 kcal Total: -60.20 6.05 -54.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244376313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.401 kcal (2) G-P(sol) polarization free energy of solvation -60.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds