Wall clock time and date at job start Tue Mar 31 2020 14:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47438 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47030 * 300.00358 * 3 2 1 6 6 H 1.48506 * 109.47143 * 59.99852 * 3 2 1 7 7 C 1.39964 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00121 * 195.61826 * 7 2 1 9 9 C 1.40974 * 120.00338 * 15.61999 * 7 2 1 10 10 C 1.40987 * 120.10613 * 25.52163 * 9 7 2 11 11 C 1.36176 * 119.88442 * 179.97438 * 10 9 7 12 12 C 1.40065 * 120.10989 * 359.97438 * 11 10 9 13 13 C 1.47788 * 119.88527 * 179.97438 * 12 11 10 14 14 C 1.39626 * 120.18054 * 130.02385 * 13 12 11 15 15 C 1.38033 * 119.90122 * 179.97438 * 14 13 12 16 16 F 1.35103 * 119.86158 * 179.97438 * 15 14 13 17 17 C 1.38751 * 120.27515 * 359.97438 * 15 14 13 18 18 C 1.38105 * 120.37325 * 359.72502 * 17 15 14 19 19 C 1.38774 * 120.08689 * 0.55432 * 18 17 15 20 20 N 1.39345 * 120.14043 * 179.71982 * 19 18 17 21 21 C 1.40020 * 120.22526 * 0.27225 * 12 11 10 22 22 C 1.36215 * 120.10623 * 359.48321 * 21 12 11 23 23 C 1.50700 * 120.05391 * 180.25761 * 22 21 12 24 24 F 1.39904 * 109.47420 * 0.23984 * 23 22 21 25 25 F 1.39900 * 109.47333 * 120.23506 * 23 22 21 26 26 F 1.39898 * 109.47352 * 240.23888 * 23 22 21 27 27 H 0.96995 * 119.99951 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.05927 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.94507 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.04841 * 359.94874 * 14 13 12 31 31 H 1.08008 * 119.80895 * 180.02562 * 17 15 14 32 32 H 1.08000 * 119.95678 * 180.27575 * 18 17 15 33 33 H 0.97003 * 120.00432 * 179.72438 * 20 19 18 34 34 H 0.97001 * 119.99540 * 359.45580 * 20 19 18 35 35 H 1.07999 * 119.94592 * 179.72452 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0582 -1.2295 0.2513 9 6 1.3424 -2.4103 -0.3298 10 6 0.1953 -2.3799 -1.1490 11 6 -0.4440 -3.5402 -1.4646 12 6 0.0366 -4.7622 -0.9773 13 6 -0.6614 -6.0183 -1.3226 14 6 0.0574 -7.1066 -1.8210 15 6 -0.6003 -8.2772 -2.1411 16 9 0.0959 -9.3296 -2.6238 17 6 -1.9735 -8.3776 -1.9691 18 6 -2.6947 -7.3103 -1.4710 19 6 -2.0499 -6.1243 -1.1498 20 7 -2.7774 -5.0448 -0.6527 21 6 1.1724 -4.7973 -0.1592 22 6 1.8217 -3.6427 0.1581 23 6 3.0474 -3.6823 1.0340 24 9 3.3242 -5.0069 1.3891 25 9 4.1367 -3.1494 0.3363 26 9 2.8194 -2.9276 2.1896 27 1 -0.4850 0.8400 0.0004 28 1 -0.1753 -1.4383 -1.5262 29 1 -1.3230 -3.5180 -2.0917 30 1 1.1263 -7.0325 -1.9564 31 1 -2.4804 -9.2973 -2.2215 32 1 -3.7627 -7.3974 -1.3357 33 1 -2.3240 -4.2180 -0.4250 34 1 -3.7377 -5.1188 -0.5380 35 1 1.5364 -5.7416 0.2176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244396953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:53 Heat of formation + Delta-G solvation = -165.829111 kcal Electronic energy + Delta-G solvation = -27104.081110 eV Core-core repulsion = 22565.217177 eV Total energy + Delta-G solvation = -4538.863933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.14475 -48.37273 -46.72421 -46.52016 -39.28722 -37.57409 -34.27308 -33.91211 -31.84811 -30.54244 -29.22892 -27.79807 -25.89868 -24.61812 -22.74949 -21.75858 -20.91531 -20.26016 -17.91735 -17.47262 -17.44183 -17.32179 -16.87071 -16.57836 -16.03551 -15.47334 -15.11363 -14.75103 -14.38368 -13.93801 -13.91239 -13.52982 -13.45848 -13.24396 -13.10378 -12.97680 -12.78255 -12.72626 -12.63050 -12.55360 -12.32998 -12.00921 -11.74136 -11.36984 -11.32892 -11.11588 -10.78982 -10.51894 -10.09593 -10.06746 -9.76636 -9.58539 -8.71486 -8.08223 -7.72216 -7.19744 -6.95070 -4.78537 1.48453 1.76621 2.33825 2.59153 2.89969 2.94792 2.97706 3.67233 3.81227 4.00769 4.22257 4.30548 4.76058 5.00990 5.04592 5.12627 5.20208 5.27022 5.54532 5.64314 5.70290 5.93452 6.11505 6.15751 6.26479 6.49181 6.55024 6.61213 6.68861 6.80278 6.93670 7.15023 7.17910 7.40492 7.55584 7.65884 7.79974 7.83890 8.12246 8.17629 8.39276 8.46391 9.72452 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.004291 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.637364 B = 6524.284801 C = 7757.070142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.435 4.435 8 H 0.092 0.908 9 C 0.149 3.851 10 C -0.155 4.155 11 C -0.074 4.074 12 C -0.194 4.194 13 C -0.042 4.042 14 C -0.111 4.111 15 C 0.032 3.968 16 F -0.154 7.154 17 C -0.123 4.123 18 C -0.179 4.179 19 C 0.210 3.790 20 N -0.871 5.871 21 C -0.014 4.014 22 C -0.305 4.305 23 C 0.520 3.480 24 F -0.200 7.200 25 F -0.190 7.190 26 F -0.184 7.184 27 H 0.288 0.712 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.408 0.592 34 H 0.391 0.609 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 -4.946 -1.384 6.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.462 4.462 8 H 0.110 0.890 9 C 0.145 3.855 10 C -0.174 4.174 11 C -0.093 4.093 12 C -0.196 4.196 13 C -0.046 4.046 14 C -0.131 4.131 15 C 0.011 3.989 16 F -0.133 7.133 17 C -0.143 4.143 18 C -0.202 4.202 19 C 0.104 3.896 20 N -0.411 5.411 21 C -0.033 4.033 22 C -0.308 4.308 23 C 0.467 3.533 24 F -0.181 7.181 25 F -0.172 7.172 26 F -0.165 7.165 27 H 0.100 0.900 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.241 0.759 34 H 0.219 0.781 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.192 -4.812 -1.355 6.524 hybrid contribution 0.388 0.788 0.264 0.917 sum -3.804 -4.024 -1.091 5.644 Atomic orbital electron populations 1.69785 1.07832 1.30272 1.31257 1.26058 0.94880 1.02073 0.91533 0.86110 0.81313 0.79752 0.79004 1.17786 1.19204 1.19417 1.19990 0.98193 0.90943 1.37077 0.89001 1.17264 0.90676 0.90399 0.87167 1.21026 0.98281 0.97324 1.00803 1.20597 0.98362 0.92078 0.98251 1.17724 1.00705 0.90785 1.10337 1.18198 0.90400 0.94128 1.01899 1.21063 1.00429 0.91491 1.00118 1.17336 0.90000 0.85339 1.06198 1.91419 1.79430 1.55885 1.86564 1.20691 0.92115 0.99407 1.02075 1.20225 0.99388 0.92549 1.08042 1.17892 0.90822 0.88013 0.92917 1.42672 1.09571 1.15467 1.73397 1.20140 0.92947 0.95853 0.94319 1.19270 1.01898 0.96754 1.12870 1.18326 0.84237 0.71773 0.78985 1.93048 1.94810 1.37384 1.92884 1.93106 1.58375 1.86424 1.79253 1.93142 1.94696 1.76697 1.52004 0.90049 0.85388 0.88334 0.85194 0.85778 0.85952 0.75904 0.78145 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.24 10.88 55.55 0.60 -16.64 16 2 C 0.08 1.71 5.17 -17.33 -0.09 1.62 16 3 Si 0.92 16.97 29.59 -169.99 -5.03 11.94 16 4 H -0.25 -4.80 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 6 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.44 -10.44 7.80 -37.90 -0.30 -10.73 16 8 H 0.09 2.21 6.01 -52.49 -0.32 1.90 16 9 C 0.15 3.55 5.56 -106.80 -0.59 2.95 16 10 C -0.16 -3.49 8.62 -39.28 -0.34 -3.82 16 11 C -0.07 -1.49 7.63 -39.64 -0.30 -1.79 16 12 C -0.19 -3.85 5.10 -104.64 -0.53 -4.39 16 13 C -0.04 -0.74 5.48 -104.69 -0.57 -1.31 16 14 C -0.11 -1.90 9.48 -39.14 -0.37 -2.27 16 15 C 0.03 0.51 7.29 -39.47 -0.29 0.23 16 16 F -0.15 -2.48 17.26 2.25 0.04 -2.44 16 17 C -0.12 -1.72 10.01 -39.44 -0.39 -2.12 16 18 C -0.18 -2.43 9.88 -39.43 -0.39 -2.82 16 19 C 0.21 3.27 6.68 -83.47 -0.56 2.71 16 20 N -0.87 -12.05 8.61 32.60 0.28 -11.77 16 21 C -0.01 -0.30 8.84 -39.64 -0.35 -0.65 16 22 C -0.31 -6.93 5.38 -104.33 -0.56 -7.49 16 23 C 0.52 11.35 2.82 36.01 0.10 11.45 16 24 F -0.20 -4.05 15.95 2.25 0.04 -4.01 16 25 F -0.19 -4.14 15.67 2.25 0.04 -4.11 16 26 F -0.18 -4.13 16.48 2.25 0.04 -4.09 16 27 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 28 H 0.13 2.93 6.13 -52.49 -0.32 2.60 16 29 H 0.10 1.79 7.48 -52.49 -0.39 1.40 16 30 H 0.13 2.17 8.04 -52.49 -0.42 1.75 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.41 6.32 5.97 -40.82 -0.24 6.07 16 34 H 0.39 4.18 8.84 -40.82 -0.36 3.82 16 35 H 0.11 2.08 7.09 -52.49 -0.37 1.71 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -24.33 315.47 -7.19 -31.52 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.41 Total: 13.29 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -5.54 Total: -18.44 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 0.88 Total: -28.41 kcal Atomic # 9 Polarization: -14.80 SS G_CDS: 0.15 Total: -14.65 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -24.33 -7.19 -31.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244396953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.311 kcal (2) G-P(sol) polarization free energy of solvation -24.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds